Taxonomic distribution of Streptomyces species capable of producing bioactive compounds among strains preserved at NITE/NBRC

Applied Microbiology and Biotechnology

Volumn 80, Issue 2, 2008, Pages 287-295

  Anzai, Kozue ^a   Ohno, Michiyo ^a   Nakashima, Takuji ^a   Kuwahara, Natsumi ^a   Suzuki, Rieko ^a   Tamura, Tomohiko ^a   Komaki, Hisayuki ^a   Miyadoh, Shinji ^a   Harayama, Shigeaki ^a   Ando, Katsuhiko ^a  

^a NATIONAL INSTITUTE OF TECHNOLOGY AND EVALUATION   (Japan)

Author keywords

16S rRNA; Bioactivity; Streptomyces; Taxonomy

Indexed keywords

AMPEROMETRIC SENSORS; ARSENIC COMPOUNDS; ESCHERICHIA COLI; MICROORGANISMS; ORGANIC COMPOUNDS; TAXONOMIES;

16S RRNA; ACTIVE COMPOUNDS; ANTI MICROBIAL ACTIVITIES; ANTIFUNGAL ACTIVITIES; BIOACTIVE COMPOUNDS; BIOLOGICAL ACTIVITIES; GROWTH CONDITIONS; HEMOLYTIC ACTIVITIES; MICROBIAL TAXONOMY; PHYLOGENETIC TREES; STREPTOMYCES HYGROSCOPICUS; STREPTOMYCES SPECIES; TYROSINASE (TY); UV VISIBLE SPECTRUM;

HEALTH;

POLYENE ANTIBIOTIC AGENT; PROBIOTIC AGENT; RNA 16S;

ANTIMICROBIAL ACTIVITY; ANTIOXIDANT; BACTERIUM; BIOACTIVITY; DETECTION METHOD; SPATIAL DISTRIBUTION; TAXONOMY;

ANIMAL CELL; ANTIBACTERIAL ACTIVITY; ANTIFUNGAL ACTIVITY; ANTIMICROBIAL ACTIVITY; ANTIOXIDANT ACTIVITY; ARTICLE; BACTERIAL GROWTH; BACTERIAL STRAIN; BACTERIUM ISOLATION; CLADISTICS; CONTROLLED STUDY; DRUG ACTIVITY; DRUG DETERMINATION; ESCHERICHIA COLI; GENE SEQUENCE; NONHUMAN; PHYLOGENY; PRESERVATION; SPECIES DISTRIBUTION; STREPTOMYCES; STREPTOMYCES HYGROSCOPICUS; TAXONOMY;

ANIMALS; ANTI-BACTERIAL AGENTS; ANTIFUNGAL AGENTS; ANTIOXIDANTS; DNA, BACTERIAL; DNA, RIBOSOMAL; ERYTHROCYTES; HEMOLYTIC AGENTS; PEPTIDES; PHYLOGENY; RABBITS; RNA, RIBOSOMAL, 16S; STREPTOMYCES; UNITED STATES; UNITED STATES GOVERNMENT AGENCIES;

ESCHERICHIA COLI; STREPTOMYCES; STREPTOMYCES HYGROSCOPICUS;

EID: 48349123549     PISSN: 01757598     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00253-008-1510-6     Document Type: Article

References (42)

1. RI Amann W Ludwig KH Schleifer 1995 Phylogenetic identification and in situ detection of individual microbial cells without cultivation Microbiol Rev 59 143 169
2. T Arai K Takahashi S Nakahara A Kubo 1980 The structure of a novel antitumor antibiotic, saframycin A Experientia 36 1025 1027
3. A Basilio I González MF Vicente J Gorrochategui A Cabello A González O Genilloud 2003 Patterns of antimicrobial activities from soil actinomycetes isolated under different conditions of pH and salinity J Appl Microbiol 95 814 823
4. SD Bentley KF Chater AM Cerdeño-Tárraga GL Challis NR Thomson KD James DE Harris MA Quail H Kieser D Harper A Bateman S Brown G Chandra CW Chen M Collins A Cronin A Fraser A Goble J Hidalgo T Hornsby S Howarth CH Huang T Kieser L Larke L Murphy K Oliver S O'Neil E Rabbinowitsch MA Rajandream K Rutherford S Rutter K Seeger D Saunders S Sharp R Squares S Squares K Taylor T Warren A Wietzorrek J Woodward BG Barrell J Parkhill DA Hopwood 2002 Complete genome sequence of the model actinomycete Streptomyces coelicolor A3(2) Nature 417 141 147
5. H Bredholdt OA Galatenko K Engelhardt E Fjaervik LP Terekhova SB Zotchev 2007 Rare actinomycete bacteria from the shallow water sediments of the Trondheim fjord, Norway: isolation, diversity and biological activity Environ Microbiol 9 2756 2764
6. E Busti P Monciardini L Cavaletti R Bamonte A Lazzarini M Sosio S Donadio 2006 Antibiotic-producing ability by representatives of a newly discovered lineage of actinomycetes Microbiology 152 675 683
7. DE Cane CT Walsh C Khosla 1998 Harnessing the biosynthetic code: combinations, permutations and mutations Science 282 63 68
8. JA Chan TT Wei CC Kalita DJ Warnick AL Garretson AA Aszalos 1977 Isolation and characterization of a new antitumor agent produced by Streptomyces griseus J Antibiot (Tokyo) 30 1140 1142
9. AL Demain 1999 Pharmaceutically active secondary metabolites of microorganisms Appl Microbiol Biotechnol 52 455 463
10. HT Dulmage 1953 The production of neomycin by Streptomyces fradiae in synthetic media Appl Microbiol 1 103 106
11. S Fujita 2006 Graphs to chemical structures 3. General theorems with the use of different sets of sphericity indices for combinatorial enumeration of nonrigid stereoisomers Theor Chem Acc 115 37 53
12. S Gurusiddaiah SO Graham 1980 Some chemical and physical characteristics of pantomycin, and antiobiotic isolated from Streptomyces hygroscopicus Antimicrob Agents Chemother 17 980 987
13. JM Hamilton-Miller 1974 Fungal sterols and the mode of action of the polyene antibiotics Adv Appl Microbiol 17 109 134
14. H Hatanaka M Iwami T Kino T Goto M Okuhara 1988 FR-900520 and FR-900523, novel immunosuppressants isolated from a Streptomyces. I. Taxonomy of the producing strain J Antibiot (Tokyo) 41 1586 1591
15. K Hatano T Nishii H Kasai 2003 Taxonomic re-evaluation of whorl-forming Streptomyces (formerly Streptoverticillium) species by using phenotypes, DNA-DNA hybridization and sequences of gyrB, and proposal of Streptomyces luteireticuli (ex Katoh and Arai 1957) corrig., sp. nov., nom. rev Int J Syst Evol Microbiol 53 1519 1529
16. M Hayakawa H Nonomura 1987 Humic acid-vitamin agar, a new medium for the selective isolation of soil actinomycetes J Ferment Technol 65 501 509
17. M Hayakawa H Nonomura 1989 New method for the intensive isolation of actinomycetes from soil Actinomycetologica 3 95 104
18. T Henkel T Ciesiolka J Rohr A Zeeck 1989 Urdamycins, new angucycline antibiotics from Streptomyces fradiae. V. Derivatives of urdamycin A J Antibiot (Tokyo) 42 299 311
19. S Horinouchi T Beppu 1993-1994 A-factor and streptomycin biosynthesis in Streptomyces griseus Antonie Van Leeuwenhoek 64 177 186
20. SC Hsu JL Lockwood 1975 Powdered chitin agar as a selective medium for enumeration of actinomycetes in water and soil Appl Microbiol 29 422 426
21. P Hugenholtz BM Goebel NR Pace 1988 Impact of culture-independent studies on the emerging phylogenetic view of bacterial diversity J Bacteriol 180 4765 4774
22. S Kunihiro M Kaneda 2003 Glomecidin, a novel antifungal cyclic tetrapeptide produced by Streptomyces lavendulae H698 SY2 J Antibiot (Tokyo) 56 30 33
23. AB Kupferberg H Styles HO Singher SA Waksman 1950 The production of streptocin by different strains of Streptomyces griseus J Bacteriol 59 523 526
24. DJ Lane B Pace GJ Olsen DA Stahl ML Sogin NR Pace 1985 Rapid determination of 16S ribosomal RNA sequences for phylogenetic analyses Proc Natl Acad Sci U S A 82 6955 6959
25. JY Lee BK Hwang 2002 Diversity of antifungal actinomycetes in various vegetative soils of Korea Can J Microbiol 48 407 417
26. PC Michels YL Khmelnitsky JS Dordick DS Clark 1998 Combinatorial biocatalysis: a natural approach to drug discovery Trends Biotechnol 16 210 215
27. T Nakashima E Sato Y Niwano M Kohno W Muraoka T Oda 2007 Inhibitory or scavenging action of ketoconazole and ciclopiroxolamine against reactive oxygen species released by primed inflammatory cells Br J Dermatol 156 720 727
28. JK No DY Soung YJ Kim KH Shim YS Jun SH Rhee T Yokozawa HY Chung 1999 Inhibition of tyrosinase by green tea components Life Sci 65 PL241 PL246
29. H Nonomura 1974 Key for classification and identification of 458 Species of the Streptomycetes Included in ISP: The International Streptomyces Project J Ferment Technol 52 78 92
30. Okami Y, Hotta K (1988) Search and discovery of new antibiotics. In: Goodfellow M, Williams ST, Mordarski M (eds) Actinomycetes in biotechnology. Academic, London, pp 33-67
31. S Okamoto K Nakamura T Nihira Y Yamada 1995 Virginiae butanolide binding protein from Streptomyces virginiae. Evidence that VbrA is not the virginiae butanolide binding protein and reidentification of the true binding protein J Biol Chem 270 12319 12326
32. S Omura H Ikeda J Ishikawa A Hanamoto C Takahashi M Shinose Y Takahashi H Horikawa H Nakazawa T Osonoe H Kikuchi T Shiba Y Sakaki M Hattori 2001 Genome sequence of an industrial microorganism Streptomyces avermitilis: deducing the ability of producing secondary metabolites Proc Natl Acad Sci U S A 98 12215 12220
33. H Onaka N Ando T Nihira Y Yamada T Beppu S Horinouchi 1995 Cloning and characterization of the A-factor receptor gene from Streptomyces griseus J Bacteriol 177 6083 6092
34. Y Ouhdouch M Barakate C Finance 2001 Actinomycetes of Moroccan habitats: isolation and screening for antifungal activities Eur J Soil Biol 37 69 74
35. EB Shirling D Gottlieb 1966 Methods for characterization of Streptomyces species Int J Syst Bacteriol 16 313 340
36. L Slechta LE Johnson 1976 A new metabolite from Streptomyces hygroscopicus I. Fermentation and isolation J Antibiot (Tokyo) 29 685 687
37. T Tamura M Hayakawa K Hatano 1998 A new genus of the order Actinomycetales, Cryptosporangium gen. nov., with descriptions of Cryptosporangium arvum sp. nov. and Cryptosporangium japonicum sp. nov Int J Syst Bacteriol 48 995 1005
38. C Vezina A Kudelski SN Sehgal 1975 Rapamycin (AY-22,989), a new antifungal antibiotic. I. Taxonomy of the producing streptomycete and isolation of the active principle J Antibiot (Tokyo) 28 721 726
39. M Waki T Nihira Y Yamada 1997 Cloning and characterization of the gene (farA) encoding the receptor for an extracellular regulatory factor (IM-2) from Streptomyces sp. strain FRI-5 J Bacteriol 179 5131 5137
40. MG Watve R Tickoo MM Jog BD Bhole 2001 How many antibiotics are produced by the genus Streptomyces Arch Microbiol 176 386 390
41. G Werner H Hagenmaier H Drautz A Baumgartner H Zahner 1984 Metabolic products of microorganisms, 224. Bafilomycins, a new group of macrolide antibiotics. Production, isolation, chemical structure and biological activity J Antibiot (Tokyo) 37 110 117
42. S Yamamoto S Harayama 1995 PCR amplification and direct sequencing of gyrB genes with universal primers and their application to the detection and taxonomic analysis of Pseudomonas putida strains Appl Environ Microbiol 61 1104 1109