-
1
-
-
0032694167
-
A sampling of the yeast proteome
-
Futcher B, Latter GI, Monardo P, McLaughlin CS, Garrels JI (1999) A sampling of the yeast proteome. Mol Cell Biol 19: 7357-7368.
-
(1999)
Mol Cell Biol
, vol.19
, pp. 7357-7368
-
-
Futcher, B.1
Latter, G.I.2
Monardo, P.3
McLaughlin, C.S.4
Garrels, J.I.5
-
2
-
-
0036545614
-
Complementary profiling of gene expression at the transcriptome and proteome levels in Saccharomyces cerevisiae
-
Griffin TJ, Gygi SP, Ideker T, Rist B, Eng J, et al. (2002) Complementary profiling of gene expression at the transcriptome and proteome levels in Saccharomyces cerevisiae. Mol Cell Proteomics 1: 323-333.
-
(2002)
Mol Cell Proteomics
, vol.1
, pp. 323-333
-
-
Griffin, T.J.1
Gygi, S.P.2
Ideker, T.3
Rist, B.4
Eng, J.5
-
4
-
-
0035805255
-
Integrated genomic and proteomic analyses of a systematically perturbed metabolic network
-
Ideker T, Thorsson V, Ranish JA, Christmas R, Buhler J, et al. (2001) Integrated genomic and proteomic analyses of a systematically perturbed metabolic network. Science 292: 929-934.
-
(2001)
Science
, vol.292
, pp. 929-934
-
-
Ideker, T.1
Thorsson, V.2
Ranish, J.A.3
Christmas, R.4
Buhler, J.5
-
5
-
-
33847081243
-
Comparative proteomic and transcriptomic profiling of the fission yeast Schizosaccharomyces pombe
-
Schmidt MW, Houseman A, Ivanov AR, Wolf DA (2007) Comparative proteomic and transcriptomic profiling of the fission yeast Schizosaccharomyces pombe. Mol Syst Biol 3: 79.
-
(2007)
Mol Syst Biol
, vol.3
, pp. 79
-
-
Schmidt, M.W.1
Houseman, A.2
Ivanov, A.R.3
Wolf, D.A.4
-
6
-
-
0037453060
-
Protein pathway and complex clustering of correlated mRNA and protein expression analyses in Saccharomyces cerevisiae
-
Washburn MP, Koller A, Oshiro G, Ulaszek RR, Plouffe D, et al. (2003) Protein pathway and complex clustering of correlated mRNA and protein expression analyses in Saccharomyces cerevisiae. Proc Natl Acad Sci U S A 100: 3107-3112.
-
(2003)
Proc Natl Acad Sci U S A
, vol.100
, pp. 3107-3112
-
-
Washburn, M.P.1
Koller, A.2
Oshiro, G.3
Ulaszek, R.R.4
Plouffe, D.5
-
7
-
-
0345492332
-
Synergy and contingency as driving forces for the evolution of multiple secondary metabolite production by Streptomyces species
-
Challis GL, Hopwood DA (2003) Synergy and contingency as driving forces for the evolution of multiple secondary metabolite production by Streptomyces species. Proc Natl Acad Sci U S A 100 Suppl 2: 14555-14561.
-
(2003)
Proc Natl Acad Sci U S A
, vol.100
, Issue.SUPPL. 2
, pp. 14555-14561
-
-
Challis, G.L.1
Hopwood, D.A.2
-
8
-
-
0037046560
-
Complete genome sequence of the model actinomycete Streptomyces coelicolor A3(2)
-
Bentley SD, Chater KF, Cerdeno-Tarraga AM, Challis GL, Thomson NR, et al. (2002) Complete genome sequence of the model actinomycete Streptomyces coelicolor A3(2). Nature 417: 141-147.
-
(2002)
Nature
, vol.417
, pp. 141-147
-
-
Bentley, S.D.1
Chater, K.F.2
Cerdeno-Tarraga, A.M.3
Challis, G.L.4
Thomson, N.R.5
-
9
-
-
47749151772
-
-
FEMS Microbiol Lett
-
Li W, Wu J, Tan W, Zhao C, Wang Y, et al. (2006) A genetic and bioinformatic analysis of Streptomyces coelicolor genes containing TTA codons, possible targets for regulation by a developmentally significant tRNA. FEMS Microbiol Lett.
-
(2006)
A genetic and bioinformatic analysis of Streptomyces coelicolor genes containing TTA codons, possible targets for regulation by a developmentally significant tRNA
-
-
Li, W.1
Wu, J.2
Tan, W.3
Zhao, C.4
Wang, Y.5
-
10
-
-
0032875632
-
A Streptomyces coelicolor antibiotic regulatory gene, absB, encodes an RNase III homolog
-
Price B, Adamidis T, Kong R, Champness W (1999) A Streptomyces coelicolor antibiotic regulatory gene, absB, encodes an RNase III homolog. J Bacteriol 181: 6142-6151.
-
(1999)
J Bacteriol
, vol.181
, pp. 6142-6151
-
-
Price, B.1
Adamidis, T.2
Kong, R.3
Champness, W.4
-
11
-
-
0032958485
-
Alteration of the synthesis of the Clp ATP-dependent protease affects morphological and physiological differentiation in Streptomyces
-
de Crecy-Lagard V, Servant-Moisson P, Viala J, Grandvalet C, Mazodier P (1999) Alteration of the synthesis of the Clp ATP-dependent protease affects morphological and physiological differentiation in Streptomyces. Mol Microbiol 32: 505-517.
-
(1999)
Mol Microbiol
, vol.32
, pp. 505-517
-
-
de Crecy-Lagard, V.1
Servant-Moisson, P.2
Viala, J.3
Grandvalet, C.4
Mazodier, P.5
-
12
-
-
19944432197
-
Multiplexed protein quantitation in Saccharomyces cerevisiae using amine-reactive isobaric tagging reagents
-
Ross PL, Huang YN, Marchese JN, Williamson B, Parker K, et al. (2004) Multiplexed protein quantitation in Saccharomyces cerevisiae using amine-reactive isobaric tagging reagents. Mol Cell Proteomics 3: 1154-1169.
-
(2004)
Mol Cell Proteomics
, vol.3
, pp. 1154-1169
-
-
Ross, P.L.1
Huang, Y.N.2
Marchese, J.N.3
Williamson, B.4
Parker, K.5
-
13
-
-
34848889259
-
The Paragon Algorithm, a next generation search engine that uses sequence temperature values and feature probabilities to identify peptides from tandem mass spectra
-
Shilov IV, Seymour SL, Patel AA, Loboda A, Tang WH, et al. (2007) The Paragon Algorithm, a next generation search engine that uses sequence temperature values and feature probabilities to identify peptides from tandem mass spectra. Mol Cell Proteomics 6: 1638-1655.
-
(2007)
Mol Cell Proteomics
, vol.6
, pp. 1638-1655
-
-
Shilov, I.V.1
Seymour, S.L.2
Patel, A.A.3
Loboda, A.4
Tang, W.H.5
-
14
-
-
33646570847
-
Isobaric tags for relative and absolute quantitation (iTRAQ) reproducibility: Implication of multiple injections
-
Chong PK, Gan CS, Pham TK, Wright PC (2006) Isobaric tags for relative and absolute quantitation (iTRAQ) reproducibility: Implication of multiple injections. J Proteome Res 5: 1232-1240.
-
(2006)
J Proteome Res
, vol.5
, pp. 1232-1240
-
-
Chong, P.K.1
Gan, C.S.2
Pham, T.K.3
Wright, P.C.4
-
15
-
-
0142151385
-
Overcoming technical variation and biological variation in quantitative proteomics
-
Molloy MP, Brzezinski EE, Hang J, McDowell MT, VanBogden RA (2003) Overcoming technical variation and biological variation in quantitative proteomics. Proteomics 3: 1912-1919.
-
(2003)
Proteomics
, vol.3
, pp. 1912-1919
-
-
Molloy, M.P.1
Brzezinski, E.E.2
Hang, J.3
McDowell, M.T.4
VanBogden, R.A.5
-
16
-
-
22144453213
-
Predicted highly expressed genes in the genomes of Streptomyces coelicolor and Streptomyces avermitilis and the implications for their metabolism
-
Wu G, Culley DE, Zhang W (2005) Predicted highly expressed genes in the genomes of Streptomyces coelicolor and Streptomyces avermitilis and the implications for their metabolism. Microbiology 151: 2175-2187.
-
(2005)
Microbiology
, vol.151
, pp. 2175-2187
-
-
Wu, G.1
Culley, D.E.2
Zhang, W.3
-
17
-
-
0038476173
-
Revisiting the codon adaptation index from a whole-genome perspective: Analyzing the relationship between gene expression and codon occurrence in yeast using a variety of models
-
Jansen R, Bussemaker HJ, Gerstein M (2003) Revisiting the codon adaptation index from a whole-genome perspective: analyzing the relationship between gene expression and codon occurrence in yeast using a variety of models. Nucleic Acids Res 31: 2242-2251.
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 2242-2251
-
-
Jansen, R.1
Bussemaker, H.J.2
Gerstein, M.3
-
18
-
-
26844559000
-
Exponentially modified protein abundance index (emPAI) for estimation of absolute protein amount in proteomics by the number of sequenced peptides per protein
-
Ishihama Y, Oda Y, Tabata T, Sato T, Nagasu T, et al. (2005) Exponentially modified protein abundance index (emPAI) for estimation of absolute protein amount in proteomics by the number of sequenced peptides per protein. Mol Cell Proteomics 4: 1265-1272.
-
(2005)
Mol Cell Proteomics
, vol.4
, pp. 1265-1272
-
-
Ishihama, Y.1
Oda, Y.2
Tabata, T.3
Sato, T.4
Nagasu, T.5
-
19
-
-
30844434821
-
A framework to analyze multiple time series data: A case study with Streptomyces coelicolor
-
Mehra S, Lian W, Jayapal KP, Charaniya. SP, Sherman DH, et al. (2006) A framework to analyze multiple time series data: a case study with Streptomyces coelicolor. J Ind Microbiol Biotechnol 33: 159-172.
-
(2006)
J Ind Microbiol Biotechnol
, vol.33
, pp. 159-172
-
-
Mehra, S.1
Lian, W.2
Jayapal, K.P.3
Charaniya, S.P.4
Sherman, D.H.5
-
20
-
-
4344568530
-
Relationship between codon biased genes, microarray expression values and physiological characteristics of Streptococcus pneumoniae
-
Martin-Galiano AJ, Wells JM, de la Campa AG (2004) Relationship between codon biased genes, microarray expression values and physiological characteristics of Streptococcus pneumoniae. Microbiology 150: 2313-2325.
-
(2004)
Microbiology
, vol.150
, pp. 2313-2325
-
-
Martin-Galiano, A.J.1
Wells, J.M.2
de la Campa, A.G.3
-
21
-
-
0348013051
-
Hierarchy of sequence-dependent features associated with prokaryotic translation
-
Lithwick C, Margalit H (2003) Hierarchy of sequence-dependent features associated with prokaryotic translation. Genome Res 13: 2665-2673.
-
(2003)
Genome Res
, vol.13
, pp. 2665-2673
-
-
Lithwick, C.1
Margalit, H.2
-
22
-
-
33845790070
-
Correlation of mRNA Expression and Protein Abundance Affected by Multiple Sequence Features Related to Translational Efficiency in Desulfovibrio vulgaris: A Quantitative Analysis
-
Nie L, Wu G, Zhang W (2006) Correlation of mRNA Expression and Protein Abundance Affected by Multiple Sequence Features Related to Translational Efficiency in Desulfovibrio vulgaris: A Quantitative Analysis. Genetics 174: 2229-2243.
-
(2006)
Genetics
, vol.174
, pp. 2229-2243
-
-
Nie, L.1
Wu, G.2
Zhang, W.3
-
23
-
-
0026549146
-
Compilation and analysis of DNA sequences associated with apparent streptomycete promoters
-
Strohl WR (1992) Compilation and analysis of DNA sequences associated with apparent streptomycete promoters. Nucleic Acids Res 20: 961-974.
-
(1992)
Nucleic Acids Res
, vol.20
, pp. 961-974
-
-
Strohl, W.R.1
-
24
-
-
0141920354
-
Comparing protein abundance and mRNA expression levels on a genomic scale
-
Greenbaum D, Colangelo C, Williams K, Gerstein M (2003) Comparing protein abundance and mRNA expression levels on a genomic scale. Genome Biol 4: 117.
-
(2003)
Genome Biol
, vol.4
, pp. 117
-
-
Greenbaum, D.1
Colangelo, C.2
Williams, K.3
Gerstein, M.4
-
25
-
-
36048962492
-
Comparative analysis of gene expression on mRNA and protein level during development of Streptomyces cultures by using singular value decomposition
-
Vohradsky J, Branny P, Thompson CJ (2007) Comparative analysis of gene expression on mRNA and protein level during development of Streptomyces cultures by using singular value decomposition. Proteomics 7: 3853-3866.
-
(2007)
Proteomics
, vol.7
, pp. 3853-3866
-
-
Vohradsky, J.1
Branny, P.2
Thompson, C.J.3
-
26
-
-
0036433469
-
Primary and secondary metabolism, and post-translational protein modifications, as portrayed by proteomic analysis of Streptomyces coelicolor
-
Hesketh AR, Chandra G, Shaw AD, Rowland JJ, Kell DB, et al. (2002) Primary and secondary metabolism, and post-translational protein modifications, as portrayed by proteomic analysis of Streptomyces coelicolor. Mol Microbiol 46: 917-932.
-
(2002)
Mol Microbiol
, vol.46
, pp. 917-932
-
-
Hesketh, A.R.1
Chandra, G.2
Shaw, A.D.3
Rowland, J.J.4
Kell, D.B.5
-
27
-
-
33947713897
-
The N-end rule pathway for regulated proteolysis: Prokaryotic and eukaryotic strategies
-
Mogk A, Schmidt R, Bukau B (2007) The N-end rule pathway for regulated proteolysis: prokaryotic and eukaryotic strategies. Trends Cell Biol 17: 165-172.
-
(2007)
Trends Cell Biol
, vol.17
, pp. 165-172
-
-
Mogk, A.1
Schmidt, R.2
Bukau, B.3
-
28
-
-
33846165487
-
Absolute protein expression profiling estimates the relative contributions of transcriptional and translational regulation
-
Lu P, Vogel C, Wang R, Yao X, Marcotte EM (2007) Absolute protein expression profiling estimates the relative contributions of transcriptional and translational regulation. Nat Biotechnol 25: 117-124.
-
(2007)
Nat Biotechnol
, vol.25
, pp. 117-124
-
-
Lu, P.1
Vogel, C.2
Wang, R.3
Yao, X.4
Marcotte, E.M.5
-
29
-
-
0142125295
-
A rare leucine codon in adpA is implicated in the morphological defect of bldA mutants of Streptomyces coelicolor
-
Takano E, Tao M, Long F, Bibb MJ, Wang L, et al. (2003) A rare leucine codon in adpA is implicated in the morphological defect of bldA mutants of Streptomyces coelicolor. Mol Microbiol 50: 475-486.
-
(2003)
Mol Microbiol
, vol.50
, pp. 475-486
-
-
Takano, E.1
Tao, M.2
Long, F.3
Bibb, M.J.4
Wang, L.5
-
30
-
-
37548999354
-
Transcriptome dynamics-based operon prediction and verification in Streptomyces coelicolor
-
Charaniya S, Mehra S, Lian W, Jayapal KP, Karypis G, et al. (2007) Transcriptome dynamics-based operon prediction and verification in Streptomyces coelicolor. Nucleic Acids Res 35: 7222-7236.
-
(2007)
Nucleic Acids Res
, vol.35
, pp. 7222-7236
-
-
Charaniya, S.1
Mehra, S.2
Lian, W.3
Jayapal, K.P.4
Karypis, G.5
-
31
-
-
35348849335
-
Practical
-
Genetics: The John Innes Foundation, Norwich, UK
-
Kieser T, Bibb MJ, Buttner MJ, Chater KF, Hopwood DA (2000) Practical Streptomyces Genetics: The John Innes Foundation, Norwich, UK.
-
(2000)
Streptomyces
-
-
Kieser, T.1
Bibb, M.J.2
Buttner, M.J.3
Chater, K.F.4
Hopwood, D.A.5
-
32
-
-
0035576880
-
Global analysis of growth phase responsive gene expression and regulation of antibiotic biosynthetic pathways in Streptomyces coelicolor using DNA microarrays
-
Huang J, Lih CJ, Pan KH, Cohen SN (2001) Global analysis of growth phase responsive gene expression and regulation of antibiotic biosynthetic pathways in Streptomyces coelicolor using DNA microarrays. Genes Dev 15: 3183-3192.
-
(2001)
Genes Dev
, vol.15
, pp. 3183-3192
-
-
Huang, J.1
Lih, C.J.2
Pan, K.H.3
Cohen, S.N.4
-
33
-
-
0037162469
-
Global analysis of mRNA decay and abundance in Escherichia coli at single-gene resolution using two-color fluorescent DNA microarrays
-
Bernstein JA, Khodursky AB, Lin PH, Lin-Chao S, Cohen SN (2002) Global analysis of mRNA decay and abundance in Escherichia coli at single-gene resolution using two-color fluorescent DNA microarrays. Proc Natl Acad Sci U S A 99: 9697-9702.
-
(2002)
Proc Natl Acad Sci U S A
, vol.99
, pp. 9697-9702
-
-
Bernstein, J.A.1
Khodursky, A.B.2
Lin, P.H.3
Lin-Chao, S.4
Cohen, S.N.5
-
34
-
-
0033982936
-
KEGG: Kyoto encyclopedia of genes and genomes
-
Kanehisa M, Goto S (2000) KEGG: kyoto encyclopedia of genes and genomes. Nucleic Acids Res 28: 27-30.
-
(2000)
Nucleic Acids Res
, vol.28
, pp. 27-30
-
-
Kanehisa, M.1
Goto, S.2
|