메뉴 건너뛰기




Volumn 3, Issue 5, 2008, Pages

Concordant gene expression in leukemia cells and normal leukocytes is associated with germline cis-SNPs

Author keywords

[No Author keywords available]

Indexed keywords

ANTINEOPLASTIC AGENT; GLUTATHIONE TRANSFERASE M2; GLYCERALDEHYDE 3 PHOSPHATE DEHYDROGENASE; PURINE;

EID: 47749085509     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0002144     Document Type: Article
Times cited : (5)

References (41)
  • 2
    • 2642513869 scopus 로고    scopus 로고
    • Individual-specific variation of gene expression in peripheral blood leukocytes
    • Radich JP, Mao M, Stepaniants S, Biery M, Castle J, et al. (2004) Individual-specific variation of gene expression in peripheral blood leukocytes. Genomics 83: 980-988.
    • (2004) Genomics , vol.83 , pp. 980-988
    • Radich, J.P.1    Mao, M.2    Stepaniants, S.3    Biery, M.4    Castle, J.5
  • 3
    • 25144455887 scopus 로고    scopus 로고
    • Variation in gene expression profiles of peripheral blood mononuclear cells from healthy volunteers
    • Eady JJ, Wortley GM, Wormstone YM, Hughes JC, Astley SB, et al. (2005) Variation in gene expression profiles of peripheral blood mononuclear cells from healthy volunteers. Physiol Genomics 22: 402-411.
    • (2005) Physiol Genomics , vol.22 , pp. 402-411
    • Eady, J.J.1    Wortley, G.M.2    Wormstone, Y.M.3    Hughes, J.C.4    Astley, S.B.5
  • 4
    • 33846978695 scopus 로고    scopus 로고
    • Relative impact of nucleotide and copy number variation on gene expression phenotypes
    • Stranger BE, Forrest MS, Dunning M, Ingle CE, Beazley C, et al. (2007) Relative impact of nucleotide and copy number variation on gene expression phenotypes. Science 315: 848-853.
    • (2007) Science , vol.315 , pp. 848-853
    • Stranger, B.E.1    Forrest, M.S.2    Dunning, M.3    Ingle, C.E.4    Beazley, C.5
  • 5
    • 33751329250 scopus 로고    scopus 로고
    • Global variation in copy number in the human genome
    • Redon R, Ishikawa S, Fitch KR, Feuk L, Perry GH, et al. (2006) Global variation in copy number in the human genome. Nature 444: 444-454.
    • (2006) Nature , vol.444 , pp. 444-454
    • Redon, R.1    Ishikawa, S.2    Fitch, K.R.3    Feuk, L.4    Perry, G.H.5
  • 6
    • 0037456823 scopus 로고    scopus 로고
    • Genetics of gene expression surveyed in maize, mouse and man
    • Schadt EE, Monks SA, Drake TA, Lusis AJ, Che N, et al. (2003) Genetics of gene expression surveyed in maize, mouse and man. Nature 422: 297-302.
    • (2003) Nature , vol.422 , pp. 297-302
    • Schadt, E.E.1    Monks, S.A.2    Drake, T.A.3    Lusis, A.J.4    Che, N.5
  • 7
    • 33751235250 scopus 로고    scopus 로고
    • Integration of HapMap-based SNP pattern analysis and gene expression profiling reveals common SNP profiles for cancer therapy outcome predictor genes
    • Glinsky GV (2006) Integration of HapMap-based SNP pattern analysis and gene expression profiling reveals common SNP profiles for cancer therapy outcome predictor genes. Cell Cycle 5: 2613-2625.
    • (2006) Cell Cycle , vol.5 , pp. 2613-2625
    • Glinsky, G.V.1
  • 8
    • 34147224008 scopus 로고    scopus 로고
    • Genome-wide analysis of genetic alterations in acute lymphoblastic leukaemia
    • Mullighan CG, Goorha S, Radtke I, Miller CB, Coustan-Smith E, et al. (2007) Genome-wide analysis of genetic alterations in acute lymphoblastic leukaemia. Nature 446: 758-764.
    • (2007) Nature , vol.446 , pp. 758-764
    • Mullighan, C.G.1    Goorha, S.2    Radtke, I.3    Miller, C.B.4    Coustan-Smith, E.5
  • 9
    • 4043128071 scopus 로고    scopus 로고
    • Genetic analysis of genome-wide variation in human gene expression
    • Morley M, Molony CM, Weber TM, Devlin JL, Ewens KG, et al. (2004) Genetic analysis of genome-wide variation in human gene expression. Nature 430: 743-747.
    • (2004) Nature , vol.430 , pp. 743-747
    • Morley, M.1    Molony, C.M.2    Weber, T.M.3    Devlin, J.L.4    Ewens, K.G.5
  • 12
    • 34548719076 scopus 로고    scopus 로고
    • Discovery of expression QTLs using large-scale transcriptional profiling in human lymphocytes
    • Goring HH, Curran JE, Johnson MP, Dyer TD, Charlesworth J, et al. (2007) Discovery of expression QTLs using large-scale transcriptional profiling in human lymphocytes. Nat Genet 39: 1208-1216.
    • (2007) Nat Genet , vol.39 , pp. 1208-1216
    • Goring, H.H.1    Curran, J.E.2    Johnson, M.P.3    Dyer, T.D.4    Charlesworth, J.5
  • 15
    • 33846631884 scopus 로고    scopus 로고
    • Common genetic variants account for differences in gene expression among ethnic groups
    • Spielman RS, Bastone LA, Burdick JT, Morley M, Ewens WJ, et al. (2007) Common genetic variants account for differences in gene expression among ethnic groups. Nat Genet 39: 226-231.
    • (2007) Nat Genet , vol.39 , pp. 226-231
    • Spielman, R.S.1    Bastone, L.A.2    Burdick, J.T.3    Morley, M.4    Ewens, W.J.5
  • 16
    • 0037370311 scopus 로고    scopus 로고
    • Natural variation in human gene expression assessed in lymphoblastoid cells
    • Cheung VG, Conlin LK, Weber TM, Arcaro M, Jen KY, et al. (2003) Natural variation in human gene expression assessed in lymphoblastoid cells. Nat Genet 33: 422-425.
    • (2003) Nat Genet , vol.33 , pp. 422-425
    • Cheung, V.G.1    Conlin, L.K.2    Weber, T.M.3    Arcaro, M.4    Jen, K.Y.5
  • 18
    • 0034720002 scopus 로고    scopus 로고
    • Comparison of human adult and fetal expression and identification of 535 housekeeping/ maintenance genes
    • Warrington JA, Nair A, Mahadevappa M, Tsyganskaya M (2000) Comparison of human adult and fetal expression and identification of 535 housekeeping/ maintenance genes. Physiol Genomics 2: 143-147.
    • (2000) Physiol Genomics , vol.2 , pp. 143-147
    • Warrington, J.A.1    Nair, A.2    Mahadevappa, M.3    Tsyganskaya, M.4
  • 20
    • 33644897576 scopus 로고    scopus 로고
    • Further understanding human disease genes by comparing with housekeeping genes and other genes
    • Tu Z, Wang L, Xu M, Zhou X, Chen T, et al. (2006) Further understanding human disease genes by comparing with housekeeping genes and other genes. BMC Genomics 7: 31.
    • (2006) BMC Genomics , vol.7 , pp. 31
    • Tu, Z.1    Wang, L.2    Xu, M.3    Zhou, X.4    Chen, T.5
  • 22
    • 19044399684 scopus 로고    scopus 로고
    • Classification, subtype discovery, and prediction of outcome in pediatric acute lymphoblastic leukemia by gene expression profiling
    • Yeoh EJ, Ross ME, Shurtleff SA, Williams WK, Patel D, et al. (2002) Classification, subtype discovery, and prediction of outcome in pediatric acute lymphoblastic leukemia by gene expression profiling. Cancer Cell 1: 133-143.
    • (2002) Cancer Cell , vol.1 , pp. 133-143
    • Yeoh, E.J.1    Ross, M.E.2    Shurtleff, S.A.3    Williams, W.K.4    Patel, D.5
  • 23
    • 0141993002 scopus 로고    scopus 로고
    • Classification of pediatric acute lymphoblastic leukemia by gene expression profiling
    • Ross ME, Zhou X, Song G, Shurtleff SA, Girtman K, et al. (2003) Classification of pediatric acute lymphoblastic leukemia by gene expression profiling. Blood 102: 2951-2959.
    • (2003) Blood , vol.102 , pp. 2951-2959
    • Ross, M.E.1    Zhou, X.2    Song, G.3    Shurtleff, S.A.4    Girtman, K.5
  • 24
    • 3543054544 scopus 로고    scopus 로고
    • Gene-expression patterns in drug-resistant acute lymphoblastic leukemia cells and response to treatment
    • Holleman A, Cheok MH, den Boer ML, Yang W, Veerman AJ, et al. (2004) Gene-expression patterns in drug-resistant acute lymphoblastic leukemia cells and response to treatment. N Engl J Med 351: 533-542.
    • (2004) N Engl J Med , vol.351 , pp. 533-542
    • Holleman, A.1    Cheok, M.H.2    den Boer, M.L.3    Yang, W.4    Veerman, A.J.5
  • 25
    • 20244377046 scopus 로고    scopus 로고
    • Identification of genes associated with chemotherapy crossresistance and treatment response in childhood acute lymphoblastic leukemia
    • Lugthart S, Cheok MH, den Boer ML, Yang W, Holleman A, et al. (2005) Identification of genes associated with chemotherapy crossresistance and treatment response in childhood acute lymphoblastic leukemia. Cancer Cell 7: 375-386.
    • (2005) Cancer Cell , vol.7 , pp. 375-386
    • Lugthart, S.1    Cheok, M.H.2    den Boer, M.L.3    Yang, W.4    Holleman, A.5
  • 27
    • 34248379711 scopus 로고    scopus 로고
    • Ancestry and pharmacogenetics of antileukemic drug toxicity
    • Kishi S, Cheng C, French D, Pei D, Das S, et al. (2007) Ancestry and pharmacogenetics of antileukemic drug toxicity. Blood 109: 4151-4157.
    • (2007) Blood , vol.109 , pp. 4151-4157
    • Kishi, S.1    Cheng, C.2    French, D.3    Pei, D.4    Das, S.5
  • 28
    • 34548764389 scopus 로고    scopus 로고
    • Genome scan implicates adhesion biological pathways in secondary leukemia
    • Hartford C, Yang W, Cheng C, Fan Y, Liu W, et al. (2007) Genome scan implicates adhesion biological pathways in secondary leukemia. Leukemia 21: 2128-2136.
    • (2007) Leukemia , vol.21 , pp. 2128-2136
    • Hartford, C.1    Yang, W.2    Cheng, C.3    Fan, Y.4    Liu, W.5
  • 29
    • 20444419044 scopus 로고    scopus 로고
    • Pharmacogenetics of outcome in children with acute lymphoblastic leukemia
    • Rocha JC, Cheng C, Liu W, Kishi S, Das S, et al. (2005) Pharmacogenetics of outcome in children with acute lymphoblastic leukemia. Blood 105: 4752-4758.
    • (2005) Blood , vol.105 , pp. 4752-4758
    • Rocha, J.C.1    Cheng, C.2    Liu, W.3    Kishi, S.4    Das, S.5
  • 30
    • 21244475088 scopus 로고    scopus 로고
    • Global gene expression as a function of germline genetic variation
    • French D, Wilkinson MR, Yang W, de CL, Cook EH, et al. (2005) Global gene expression as a function of germline genetic variation. Hum Mol Genet 14: 1621-1629.
    • (2005) Hum Mol Genet , vol.14 , pp. 1621-1629
    • French, D.1    Wilkinson, M.R.2    Yang, W.3    de, C.L.4    Cook, E.H.5
  • 31
    • 34250305146 scopus 로고    scopus 로고
    • Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project
    • Birney E, Stamatoyannopoulos JA, Dutta A, Guigo R, Gingeras TR, et al. (2007) Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project. Nature 447: 799-816.
    • (2007) Nature , vol.447 , pp. 799-816
    • Birney, E.1    Stamatoyannopoulos, J.A.2    Dutta, A.3    Guigo, R.4    Gingeras, T.R.5
  • 32
    • 0035071598 scopus 로고    scopus 로고
    • Sequence diversity in CYP3A promoters and characterization of the genetic basis of polymorphic CYP3A5 expression
    • Kuehl P, Zhang J, Lin Y, Lamba J, Assem M, et al. (2001) Sequence diversity in CYP3A promoters and characterization of the genetic basis of polymorphic CYP3A5 expression. Nat Genet 27: 383-391.
    • (2001) Nat Genet , vol.27 , pp. 383-391
    • Kuehl, P.1    Zhang, J.2    Lin, Y.3    Lamba, J.4    Assem, M.5
  • 33
    • 33644840600 scopus 로고    scopus 로고
    • Acute lymphoblastic leukaemia: A model for the pharmacogenomics of cancer therapy 2
    • Cheok MH, Evans WE (2006) Acute lymphoblastic leukaemia: a model for the pharmacogenomics of cancer therapy 2. Nat Rev Cancer 6: 117-129.
    • (2006) Nat Rev Cancer , vol.6 , pp. 117-129
    • Cheok, M.H.1    Evans, W.E.2
  • 34
    • 3042622767 scopus 로고    scopus 로고
    • Rationale and design of Total Therapy Study XV for newly diagnosed childhood acute lymphoblastic leukemia
    • Pui CH, Relling MV, Sandlund JT, Downing JR, Campana D, et al. (2004) Rationale and design of Total Therapy Study XV for newly diagnosed childhood acute lymphoblastic leukemia. Ann Hematol 83 Suppl 1: S124-S126.
    • (2004) Ann Hematol , vol.83 , Issue.SUPPL. 1
    • Pui, C.H.1    Relling, M.V.2    Sandlund, J.T.3    Downing, J.R.4    Campana, D.5
  • 36
    • 29144535372 scopus 로고    scopus 로고
    • Evolving gene/ transcript definitions significantly alter the interpretation of GeneChip data
    • Dai M, Wang P, Boyd AD, Kostov G, Athey B, et al. (2005) Evolving gene/ transcript definitions significantly alter the interpretation of GeneChip data. Nucleic Acids Res 33: e175.
    • (2005) Nucleic Acids Res , vol.33
    • Dai, M.1    Wang, P.2    Boyd, A.D.3    Kostov, G.4    Athey, B.5
  • 37
    • 34548256353 scopus 로고    scopus 로고
    • Identification of genetic variants contributing to cisplatin-induced cytotoxicity by use of a genomewide approach
    • Huang RS, Duan S, Shukla SJ, Kistner EO, Clark TA, et al. (2007) Identification of genetic variants contributing to cisplatin-induced cytotoxicity by use of a genomewide approach. Am J Hum Genet 81: 427-437.
    • (2007) Am J Hum Genet , vol.81 , pp. 427-437
    • Huang, R.S.1    Duan, S.2    Shukla, S.J.3    Kistner, E.O.4    Clark, T.A.5
  • 38
    • 0042424602 scopus 로고    scopus 로고
    • Statistical significance for genomewide studies
    • Storey JD, Tibshirani R (2003) Statistical significance for genomewide studies. Proc Natl Acad Sci U S A 100: 9440-9445.
    • (2003) Proc Natl Acad Sci U S A , vol.100 , pp. 9440-9445
    • Storey, J.D.1    Tibshirani, R.2
  • 40
    • 0038005018 scopus 로고    scopus 로고
    • DAVID: Database for Annotation, Visualization, and Integrated Discovery
    • Dennis G Jr, Sherman BT, Hosack DA, Yang J, Gao W, et al. (2003) DAVID: Database for Annotation, Visualization, and Integrated Discovery. Genome Biol 4: 3.
    • (2003) Genome Biol , vol.4 , pp. 3
    • Dennis Jr, G.1    Sherman, B.T.2    Hosack, D.A.3    Yang, J.4    Gao, W.5
  • 41
    • 33747823564 scopus 로고    scopus 로고
    • MEME: Discovering and analyzing DNA and protein sequence motifs
    • Bailey TL, Williams N, Misleh C, Li WW (2006) MEME: discovering and analyzing DNA and protein sequence motifs. Nucleic Acids Res 34: W369-W373.
    • (2006) Nucleic Acids Res , vol.34
    • Bailey, T.L.1    Williams, N.2    Misleh, C.3    Li, W.W.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.