Compact optical diagnostic device for isothermal nucleic acids amplification

Sensors and Actuators, B: Chemical

Volumn 133, Issue 2, 2008, Pages 493-501

  Lee, Szu Yuan ^a,b,c   Huang, Jhen Gang ^a   Chuang, Tsung Liang ^a   Sheu, Jin Chuan ^d   Chuang, Yi Kuang ^d   Holl, Mark ^e,f   Meldrum, Deirdre R ^e,f   Lee, Chun Nan ^b   Lin, Chii Wann ^a,b  

^a NATIONAL TAIWAN UNIVERSITY   (Taiwan)

^b NATIONAL TAIWAN UNIVERSITY   (Taiwan)

^c Taichung General Hospital   (Taiwan)

^d NATIONAL TAIWAN UNIVERSITY HOSPITAL   (Taiwan)

^e Arizona State University   (United States)

^f ARIZONA STATE UNIVERSITY   (United States)

Author keywords

Diagnostic device; Hepatitis B virus; Isothermal; LAMP

Indexed keywords

ACIDS; DNA; GENES; HEALTH; LIGHT METALS; MAGNESIUM; NUCLEIC ACIDS; ORGANIC ACIDS; PRECIPITATION (CHEMICAL); TURBIDITY;

AND DETECTION; DNA AMPLIFICATION; HEPATITIS B VIRUS (HBV); ISOTHERMAL AMPLIFICATION; MICRO REACTORS; NUCLEIC ACIDS AMPLIFICATION; OPTICAL DETECTION; OPTICAL DIAGNOSTICS; POLY METHYL METHACRYLATE (PMMA); PRECIPITATION (METALLOGRAPHY); PRIMER DESIGN; PYROPHOSPHATE (PPI); REAL TIME MONITORING; TURBIDITY CHANGES;

AMPLIFICATION;

EID: 47649083435     PISSN: 09254005     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.snb.2008.03.008     Document Type: Article

References (26)

1. McMahon B.J. Epidemiology and natural history of hepatitis B. Semin. Liver Dis. 25 Suppl. 1 (2005) 3-8
2. Iloeje U.H., Yang H.I., Su J., Jen C.L., You S.L., and Chen C.J. Predicting cirrhosis risk based on the level of circulating hepatitis B viral load. Gastroenterology 130 (2006) 678-686
3. Lee C.Z., Huang G.T., Yang P.M., Sheu J.C., Lai M.Y., and Chen D.S. Correlation of HBV DNA levels in serum and liver of chronic hepatitis B patients with cirrhosis. Liver 22 (2002) 130-135
4. Lee S.J., and Lee S.Y. Micro total analysis system (micro-TAS) in biotechnology. Appl. Microbiol. Biotechnol. 64 (2004) 289-299
5. Saiki R.K., Scharf S., Faloona F., Mullis K.B., Horn G.T., Erlich H.A., and Arnheim N. Enzymatic amplification of beta-globin genomic sequences and restriction site analysis for diagnosis of sickle cell anemia. Science 230 (1985) 1350-1354
6. Compton J. Nucleic acid sequence-based amplification. Nature 350 (1991) 91-92
7. Walker G.T., Fraiser M.S., Schram J.L., Little M.C., Nadeau J.G., and Malinowski D.P. Strand displacement amplification-an isothermal, in vitro DNA amplification technique. Nucleic Acids Res. 20 (1992) 1691-1696
8. Lizardi P.M., Huang X., Zhu Z., Bray-Ward P., Thomas D.C., and Ward D.C. Mutation detection and single-molecule counting using isothermal rolling-circle amplification. Nat. Genet. 19 (1998) 225-232
9. Notomi T., Okayama H., Masubuchi H., Yonekawa T., Watanabe K., Amino N., and Hase T. Loop-mediated isothermal amplification of DNA. Nucleic Acids Res. 28 (2000) E63
10. Nagamine K., Hase T., and Notomi T. Accelerated reaction by loop-mediated isothermal amplification using loop primers. Mol. Cell. Probes 16 (2002) 223-229
11. Poon L.L., Wong B.W., Ma E.H., Chan K.H., Chow L.M., Abeyewickreme W., Tangpukdee N., Yuen K.Y., Guan Y., Looareesuwan S., and Peiris J.S. Sensitive and inexpensive molecular test for falciparum malaria: detecting Plasmodium falciparum DNA directly from heat-treated blood by loop-mediated isothermal amplification. Clin. Chem. 52 (2006) 303-306
12. Iwamoto T., Sonobe T., and Hayashi K. Loop-mediated isothermal amplification for direct detection of Mycobacterium tuberculosis complex, M. avium, and M. intracellulare in sputum samples. J. Clin. Microbiol. 41 (2003) 2616-2622
13. Hong T.C., Mai Q.L., Cuong D.V., Parida M., Minekawa H., Notomi T., Hasebe F., and Morita K. Development and evaluation of a novel loop-mediated isothermal amplification method for rapid detection of severe acute respiratory syndrome coronavirus. J. Clin. Microbiol. 42 (2004) 1956-1961
14. Ito M., Watanabe M., Nakagawa N., Ihara T., and Okuno Y. Rapid detection and typing of influenza A and B by loop-mediated isothermal amplification: comparison with immunochromatography and virus isolation. J. Virol. Methods 135 (2006) 272-275
15. Poon L.L., Leung C.S., Chan K.H., Lee J.H., Yuen K.Y., Guan Y., and Peiris J.S. Detection of human influenza A viruses by loop-mediated isothermal amplification. J. Clin. Microbiol. 43 (2005) 427-430
16. Imai M., Ninomiya A., Minekawa H., Notomi T., Ishizaki T., Tashiro M., and Odagiri T. Development of H5-RT-LAMP (loop-mediated isothermal amplification) system for rapid diagnosis of H5 avian influenza virus infection. Vaccine 24 (2006) 6679-6682
17. Iwata S., Shibata Y., Kawada J., Hara S., Nishiyama Y., Morishima T., Ihira M., Yoshikawa T., Asano Y., and Kimura H. Rapid detection of Epstein-Barr virus DNA by loop-mediated isothermal amplification method. J. Clin. Virol. 37 (2006) 128-133
18. Kaneko H., Iida T., Aoki K., Ohno S., and Suzutani T. Sensitive and rapid detection of herpes simplex virus and varicella-zoster virus DNA by loop-mediated isothermal amplification. J. Clin. Microbiol. 43 (2005) 3290-3296
19. Mori Y., Nagamine K., Tomita N., and Notomi T. Detection of loop-mediated isothermal amplification reaction by turbidity derived from magnesium pyrophosphate formation. Biochem. Biophys. Res. Commun. 289 (2001) 150-154
20. Lee S.Y., Lee C.N., Mark H., Meldrum D.R., and Lin C.W. Efficient, specific, compact hepatitis B diagnostic device: optical detection of the hepatitis B virus by isothermal amplification. Sens. Actuators B: Chem. 127 (2007) 598-605
21. Lee S.Y., Lee C.N., Holl M., Meldrum D.R., and Lin C.W. Optimal hepatitis B virus primer sequence design for isothermal amplification. Biomed. Eng.: Appl. Basis Commun. 19 (2007) 137-144
22. Koch A.L. Turbidity measurements of bacterial cultures in some available commercial instruments. Anal. Biochem. 38 (1970) 252-259
23. Yanagida T., Ueda M., Murata T., Esaki S., and Ishii Y. Brownian motion, fluctuation and life. Biosystems 88 (2007) 228-242
24. Lin C.W., Chen K.P., Su M.C., Hsiao T.C., Lee S.S., Lin S.M., Shi X.J., and Lee C.K. Admittance loci design method for multilayer surface plasmon resonance devices. Sens. Actuators B: Chem. 117 (2006) 219-229
25. Lin C.W., Chen K.P., Lin S.M., and Lee C.K. Design and Fabrication of an Alternating Dielectric Multi-layer device for Surface Plasmon Resonance Sensor. Sens. Actuators B: Chem. 113 (2006) 169-176
26. Huang J.G., Lee C.L., Lin H.M., Chuang T.L., Wang W.S., Juang R.H., Wang C.H., Lee C.K., Lin S.M., and Lin C.W. A miniaturized germanium-doped silicon dioxide-based surface plasmon resonance waveguide sensor for immunoassay detection. Biosens. Bioelectron. 22 (2006) 519-525