A genomic search approach to identify esterases in Propionibacterium freudenreichii involved in the formation of flavour in Emmental cheese

Microbial Cell Factories

Volumn 7, Issue , 2008, Pages

  Dherbécourt, Julien ^a   Falentin, Hélène ^a   Canaan, Stéphane ^b   Thierry, Anne ^a  

^a AGROCAMPUS OUEST   (France)

^b CNRS   (France)

Author keywords

[No Author keywords available]

Indexed keywords

1 NAPHTHYL ACETATE ESTERASE; DIACYLGLYCEROL DERIVATIVE; ESTERASE; GLYCINE; HYBRID PROTEIN; HYDROLASE; PROPIONIC ACID; SERINE;

AMINO TERMINAL SEQUENCE; ARTICLE; BACTERIAL STRAIN; CHEESE RIPENING; CONTROLLED STUDY; ENZYME ACTIVITY; ENZYME ANALYSIS; ENZYME SPECIFICITY; ESCHERICHIA COLI; EXPERIMENTAL DESIGN; EXPRESSION VECTOR; FLAVOR; GENETIC CODE; GENETIC IDENTIFICATION; GENETIC SCREENING; HETEROLOGOUS EXPRESSION; LIPOLYSIS; MOLECULAR CLONING; NONHUMAN; NUCLEOTIDE SEQUENCE; PROPIONIBACTERIUM FREUDENREICHII; PROTEIN FAMILY; PROTEIN HYDROLYSIS; PROTEIN MOTIF; SEQUENCE HOMOLOGY; ZYMOGRAPHY;

ESCHERICHIA COLI; PROPIONIBACTERIUM FREUDENREICHII;

EID: 47349130224     PISSN: None     EISSN: 14752859     Source Type: Journal    
DOI: 10.1186/1475-2859-7-16     Document Type: Article

References (46)

1. Collins YF McSweeney PLH Wilkinson MG Lipolysis and free fatty acid catabolism in cheese: A review of current knowledge Int Dairy J 2003, 13:841-866. 10.1016/S0958-6946(03)00109-2
2. Chamba JF Perreard E Contribution of propionibacteria to lipolysis of Emmental cheese Lait 2002, 82:33-44. 10.1051/lait:2001003
3. Lopez C Maillard MB Briard-Bion V Camier B Hannon JA Lipolysis during ripening of Emmental cheese considering organization of fat and preferential localization of bacteria J Agric Food Chem 2006, 54:5855-5867. 10.1021/jf060214l 16881687
4. Langsrud T Reinbold GW Flavor development and microbiology of Swiss cheese- A review. III. Ripening and flavor production J Milk Food Technol 1973, 36:593-609.
5. Thierry A Maillard MB Richoux R Kerjean JR Lortal S Propionibacterium freudenreichii strains quantitatively affect production of volatile compounds in Swiss cheese Lait 2005, 85:57-74. 10.1051/lait:2004036
6. Canaan S Maurin D Chahinian H Pouilly B Durousseau C Frassinetti F Scappuccini-Calvo L Cambillau C Bourne Y Expression and characterization of the protein Rv1399c from Mycobacterium tuberculosis. A novel carboxyl esterase structurally related to the HSL family Eur J Biochem 2004, 271:3953-3961. 10.1111/j.1432-1033.2004.04335.x 15373841
7. Verger R Interfacial enzyme kinetics of lipolysis Annu Rev Biophys Bioeng 1976, 5:77-117. 10.1146/annurev.bb.05.060176.000453 782347
8. Lopez C Camier B Gassi JY Development of the milk fat microstructure during the manufacture and ripening of Emmental cheese observed by confocal laser scanning microscopy Int Dairy J 2007, 17:235-247. 10.1016/ j.idairyj.2005.12.015
9. Oterholm A Ordal ZJ Witter LD Purification and properties of a glycerol ester hydrolase (lipase) from Propionibacterium shermanii Appl Microbiol 1970, 20:16-22. 376858 5456938
10. Dupuis C Corre C Boyaval P Lipase and Esterase Activities of Propionibacterium freudenreichii subsp. freudenreichii Appl Environ Microbiol 1993, 59:4004-4009. 195859 16349102
11. Kakariari E Georgalaki MD Kalantzopoulos G Tsakalidou E Purification and characterization of an intracellular esterase from Propionibacterium freudenreichii ssp. freudenreichii ITG 14 Lait 2000, 80:491-501. 10.1051/ lait:2000140
12. Dupuis C Boyaval P Esterase activity of dairy Propionibacterium Lait 1993, 73:345-356. 10.1051/lait:1993432
13. Suoniemi A Tynkkynen S Cloning and characterization of an esterase from Propionibacterium freudenreichi ssp. shermanii Lait 2002, 82:81-89. 10.1051/lait:2001007
14. Bryson K Loux V Bossy R Nicolas P Chaillou S M. G Penaud S Maguin E Hoebeke M Bessieres P Gibrat JF AGMIAL: Implementing an annotation strategy for prokaryote genomes as a distributed system Nucleic Acids Res 2006, 34:3533-3545. 1524909 16855290 10.1093/nar/gkl471
15. National Center for Biotechnology Information 2008. http://www.ncbi.nlm.nih.gov/
16. Soror SH Verma V Rao R Rasool S Koul S Qazi GN Cullum J A cold-active esterase of Streptomyces coelicolor A3(2): From genome sequence to enzyme activity J Ind Microbiol Biotechnol 2007. 17554575
17. Ruiz C Falcocchio S Pastor FI Saso L Diaz P Helicobacter pylori EstV: identification, cloning, and characterization of the first lipase isolated from an epsilon-proteobacterium Appl Environ Microbiol 2007, 73:2423-2431. 1855603 17293528 10.1128/AEM.02215-06
18. The Prosite database 2008 http://www.expasy.org/prosite/
19. The Pfam database 2008 http://pfam.sanger.ac.uk/
20. Kwoun KH Jung YJ Choi WC Ryu HS Oh TK Lee JK Sequence-based approach to finding functional lipases from microbial genome databases FEMS Microbiol Lett 2004, 235:349-355. 10.1111/j.1574-6968.2004.tb09609.x 15183884
21. Malik AC Reinbold GW Vedamuthu ER An evaluation of the taxonomy of Propionibacterium Can J Microbiol 1968, 14:1185-1191. 5724887
22. Altschul SF Madden TL Schaffer AA Zhang J Zhang Z Miller W Lipman DJ Gapped BLAST and PSI-BLAST: A new generation of protein database search programs Nucleic Acids Res 1997, 25:3389-3402. 146917 9254694 10.1093/ nar/25.17.3389
23. Quevillon E Silventoinen V Pillai S Harte N Mulder N Apweiler R Lopez R InterProScan: Protein domains identifier Nucleic Acids Res 2005, 33:W116-W120. 1160203 15980438 10.1093/nar/gki442
24. Protein Data Bank 2008. http://www.rcsb.org/pdb/home/home.do
25. EMBOSS 2008. http://emboss.sourceforge.net/
26. SignalP 3.0 server 2008. http://www.cbs.dtu.dk/services/SignalP/
27. Sambrook J Fritsch EF Maniatis T Molecular cloning: A laboratory manual New York, Cold Spring Harbor Laboratory Press CSHL second 1989. http://www.MolecularCloning.com
28. Abergel C Coutard B Byrne D Chenivesse S Claude JB Deregnaucourt C Fricaux T Gianesini-Boutreux C Jeudy S Lebrun R Maza C Notredame C Poirot O Suhre K Varagnol M Claverie JM Structural genomics of highly conserved microbial genes of unknown function in search of new antibacterial targets J Struct Funct Genomics 2003, 4:141-157. 10.1023/ A:1026177202925 14649299
29. The SAmBA software 2008. http://igs-server.cnrs-mrs.fr/samba/
30. Vincentelli R Canaan S Offant J Cambillau C Bignon C Automated expression and solubility screening of His-tagged proteins in 96-well format Anal Biochem 2005, 346:77-84. 10.1016/j.ab.2005.07.039 16168382
31. Laemmli UK Cleavage of structural proteins during the assembly of the head of bacteriophage T4 Nature 1970, 227:680-685. 10.1038/227680a0 5432063
32. Shevchenko A Wilm M Vorm O Mann M Mass spectrometric sequencing of proteins silver-stained polyacrylamide gels Anal Chem 1996, 68:850-858. 10.1021/ac950914h 8779443
33. Akao T Kusaka T Kobashi K Two esterases released from Mycobacterium smegmatis from the hydrolysis of long chain acyl-CoAs and Tween J Biochem 1981, 90(6):1661-1669. 7334001
34. Lee YL Chen JC Shaw JF The thioesterase I of Escherichia coli has arylesterase activity and shows stereospecificity for protease substrates Biochem Biophys Res Commun 1997, 231:452-456. 10.1006/ bbrc.1997.5797 9070299
35. Aravind L Koonin EV Phosphoesterase domains associated with DNA polymerases of diverse origins Nucleic Acids Res 1998, 26:3746-3752. 147763 9685491 10.1093/nar/26.16.3746
36. Longhi S Cambillau C Structure-activity of cutinase, a small lipolytic enzyme Biochim Biophys Acta 1999, 1441:185-196. 10570246
37. Egmond MR J. V Fusarium solani pisi cutinase Biochimie 2000, 82:1015-1021. 10.1016/S0300-9084(00)01183-4 11099798
38. Aragon V Rossier O Cianciotto NP Legionella pneumophila genes that encode lipase and phospholipase C activities Microbiology 2002, 148:2223-2231. 12101309
39. Leenhouts K Bolhuis A Boot J Deutz I Toonen M Venema G Kok J Ledeboer A Cloning, expression, and chromosomal stabilization of the Propionibacterium shermanii proline iminopeptidase gene (pip) for food-grade application in Lactococcus lactis Appl Environ Microbiol 1998, 64:4736-4742. 90916 9835556
40. Barrett AJ Rawlings ND Families and clans of serine peptidases Arch Biochem Biophys 1995, 318:247-250. 10.1006/abbi.1995.1227 7733651
41. Mirza IA Nazi I Korczynska M Wright GD Berghuis AM Crystal structure of homoserine transacetylase from Haemophilus influenzae reveals a new family of alpha/beta-hydrolases Biochemistry 2005, 44:15768-15773. 10.1021/bi051951y 16313180
42. Baneyx F Mujacic M Recombinant protein folding and misfolding in Escherichia coli Nat Biotechnol 2004, 22:1399-1408. 10.1038/nbt1029 15529165
43. Sorensen HP Mortensen KK Soluble expression of recombinant proteins in the cytoplasm of Escherichia coli Microb Cell Fact 2005, 4:1-8. 544838 15629064 10.1186/1475-2859-4-1
44. Gupta R Gupta N Rathi P Bacterial lipases: An overview of production, purification and biochemical properties Appl Microbiol Biotechnol 2004, 64:763-781. 10.1007/s00253-004-1568-8 14966663
45. Meurice G Jacob D Deborde C Chaillou S Rouault A Leverrier P Jan G Thierry A Maillard MB Amet P Lalande M Zagorec M Boyaval P Dimova D Whole genome sequencing project of a dairy Propionibacterium freudenreichii subsp. shermanii genome: Progress and first bioinformatic analysis. Lait 2004, 84:15-24. 10.1051/lait:2003041
46. Liu SQ Holland R Crow VL Esters and their biosynthesis in fermented dairy products: A review Int Dairy J 2004, 14:923-945. 10.1016/ j.idairyj.2004.02.010