Expression of nuclease gene nucA, a member of an operon putatively involved in uracil removal from DNA and its subsequent reuse in Prevotella bryantii

Archives of Microbiology

Volumn 190, Issue 2, 2008, Pages 111-117

  Accetto, Tomaž ^a   Avguštin, Gorazd ^a  

^a UNIVERSITY OF LJUBLJANA   (Slovenia)

Author keywords

Anaerobe; Expression; Nuclease; Prevotella bryantii; Rumen

Indexed keywords

APURINIC ACID; DEOXYRIBONUCLEASE; DNA; DNA GLYCOSYLTRANSFERASE; ENDONUCLEASE; EXONUCLEASE; NUCLEASE; RIBONUCLEASE; URACIL; URIDINE KINASE;

ARTICLE; CELL FREE SYSTEM; DNA FLANKING REGION; ESCHERICHIA COLI; GENE ACTIVITY; GENE EXPRESSION; NONHUMAN; NUCLEOTIDE METABOLISM; OPERON; PREVOTELLA; PRIORITY JOURNAL; PROMOTER REGION;

BACTERIAL PROTEINS; DNA, BACTERIAL; ENDONUCLEASES; ESCHERICHIA COLI; GENE EXPRESSION; GENOME, BACTERIAL; OPERON; PREVOTELLA; URACIL;

ESCHERICHIA COLI; PREVOTELLA BRYANTII;

EID: 47349129110     PISSN: 03028933     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00203-008-0372-8     Document Type: Article

References (33)

1. T Accetto G Avguštin 2001 Non-specific DNases from the rumen bacterium Prevotella bryantii Folia Microbiol (Praha) 46 33 35
2. T Accetto M Peterka G Avguštin 2005 Type II restriction modification systems of Prevotela bryantii TC1-1 and Prevotella ruminicola 23 strains and their effect on the efficiency of DNA introduction via electroporation FEMS Microbiol Lett 247 177 183
3. T Accetto G Avguštin 2007 Studies on Prevotella nuclease using a system for the controlled expression of cloned genes in P. bryantii TC1-1 Microbiol-SGM 153 2281 2288
4. SF Altschul TL Madden AA Schäffer J Zhang Z Zhang W Miller DJ Lipman 1997 Gapped BLAST and PSI-BLAST: a new generation of protein database search programs Nucleic Acids Res 25 3389 3402
5. G Avguštin RJ Wallace HJ Flint 1997 Phenotypic diversity among ruminal isolates of Prevotella ruminicola: proposal of Prevotella brevis sp. nov., Prevotella bryantii sp. nov., and Prevotella albensis sp. nov. and redefinition of Prevotella ruminicola Int J Syst Bacteriol 47 284 288
6. Bateman A, Coin L, Durbin R, Finn RD, Hollich V, Griffiths-Jones S, Khanna A, Marshall M, Moxon S, Sonnhammer ELL, Studholme DJ, Yeats C, Eddy SR (2004) The Pfam protein families database. Nucleic Acids Res 32(Database issue):D138-141
7. DP Bayley ER Rocha CJ Smith 2000 Analysis of cepA and other Bacteroides fragilis genes reveals a unique promoter structure FEMS Microbiol Lett 193 149 154
8. M Bendjennat A Blanchard M Loutfi L Montagnier E Bahraoui 1999 Role of Mycoplasma penetrans endonuclease P40 as a potential pathogenic determinant Infect Immun 67 4456 4462
9. JD Bendtsen H Nielsen G von Heijne S Brunak 2004 Improved prediction of signal peptides: SignalP 3.0 J Mol Biol 340 783 795
10. MJ Benedik U Strych 1998 Serratia marcescens and its extracellular nuclease FEMS Microbiol Lett 165 1 13
11. MP Bryant N Small C Bouma H Chu 1958 Bacteroides ruminicola n. sp. and Succinimonas amylolytica, the new genus and species J Bacteriol 76 15 23
12. DP Chimento RJ Kadner MC Wiener 2003 The Escherichia coli membrane cobalamin transporter BtuB: structural analysis of calcium and substrate binding, and identification of orthologous transporters by sequence/structure conservation J Mol Biol 332 999 1014
13. AS Daniel J Martin I Vanat TR Whitehead HJ Flint 1995 Expression of a cloned cellulase xylanase gene from Prevotella ruminicola in Bacteroides vulgatus, Bacteroides uniformis and Prevotella ruminicola J Appl Bacteriol 79 417 424
14. D Dubnau 1999 DNA uptake in bacteria Annu Rev Microbiol 53 217 44
15. LA Kelley RM MacCallum MJE Sternberg 2000 Enhanced genome annotation using structural profiles in the program 3D-PSSM J Mol Biol 299 499 520
16. M Kilstrup K Hammer PR Jensen J Martinussen 2005 Nucleotide metabolism and ist control in lactic acid bacteria FEMS Microbiol rev 29 555 590
17. R Koebnik 2005 TonB-dependent trans-envelope signaling: the exception or the rule? Trends Microbiol 13 343 347
18. HJ Flint A Thomson 1990 Deoxyribonuclease activity in rumen bacteria Lett Appl Microbiol 11 18 21
19. FT Gates S Linn 1977 Endonuclease from Escherichia coli that acts specifically upon duplex DNA damaged by ultraviolet light, osmium tetroxide, acid, or x-rays J Biol Chem 252 2802 2807
20. MA Gorman S Morera DA Rothwell E de La Fortelle CD Mol JA Tainer ID Hickson PS Freemont 1997 The crystal structure of the human DNA repair endonuclease HAP1 suggests the recognition of extra-helical deoxyribose at DNA abasic sites EMBO J 16 6548 6558
21. Hobson PN (1969) Rumen bacteria. In: Norris JR, Ribbons DW (eds) Methods in microbiology, vol 3B. Academic press, London and New York, pp 133-149
22. Holdeman LV, Kelley RW, Moore WEC (1984) Bacteroides. In: Krieg NR, Holt JG (eds) Bergey's manual of systematic bacteriology, vol 1. Williams and Wilkins, Baltimore, Md, pp 623-624
23. Lloyd RS, Linn S (1993) Nucleases involved in DNA repair. In: Linn SM, Lloyd RS, Roberts RJ (ed) Nucleases, second edition. Cold spring harbor monograph series. Cold spring laboratory press, pp 263-316
24. 14 and its role in ammonia production by ruminal bacteria Appl Environ Microbiol 63 670 675
25. Marchler-Bauer A, Bryant SH (2004) CD-Search: protein domain annotations on the fly. Nucleic Acids Res 32(W): 327-331
26. 14 endoglucanase gene J Bacteriol 172 3620 3530
27. 14 J Bacteriol 185 2219 2226
28. O'Grady GM (2000) Detection and quantitation of uracil DNA glycosylase activity. In: Vaughan P (ed) DNA repair protocols, prokaryotic systems. Methods in molecular biology. Humana press, Totowa New Jersey, pp 33-38
29. LH Pearl 2000 Structure and function in the uracil-DNA glycosylase superfamily Mutat Res 460 165 181
30. R Provvedi I Chen D Dubnau 2001 NucA is required for DNA cleavage during transformation of Bacillus subtilis Mol Microbiol 40 634 644
31. ES Rangarajan V Shankar 2001 Sugar non-specific endonucleases FEMS Microbiol Rev 25 583 613
32. NO Van Gylswyk 1990 Enumeration and presumptive identification of some functional groups of bacteria in the rumen of dairy cows fed grass silage-based diets FEMS Microbiol Ecol 73 243 254
33. ND Walker NR McEwan RJ Wallace 2003 Cloning and functional expression of dipeptidyl peptidase IV from the ruminal bacterium Prevotella albensis M384 Microbiol-SGM 149 2227 2234