Studies on Prevotella nuclease using a system for the controlled expression of clones genes in P. bryantii TC1-1

Microbiology

Volumn 153, Issue 7, 2007, Pages 2281-2288

  Accetto, Tomaž ^a   Avguštin, Gorazd ^a  

^a UNIVERSITY OF LJUBLJANA   (Slovenia)

Author keywords

[No Author keywords available]

Indexed keywords

ENZYME NUCB; NUCLEASE; NUCLEASE B; TETRACYCLINE; UNCLASSIFIED DRUG;

ARTICLE; BACTERIAL GROWTH; BACTERIAL STRAIN; BACTERIUM CULTURE; CONCENTRATION RESPONSE; CULTURE MEDIUM; DNA DEGRADATION; GENE EXPRESSION REGULATION; GENE SEQUENCE; GENE TARGETING; GENETIC ANALYSIS; GENETIC REGULATION; MOLECULAR CLONING; NONHUMAN; NUCLEOTIDE SEQUENCE; PREVOTELLA; PREVOTELLA BRYANTII; PRIORITY JOURNAL; RNA DEGRADATION; RNA TRANSLATION; SEQUENCE ANALYSIS; SHUTTLE VECTOR;

CLONING, MOLECULAR; DEOXYRIBONUCLEASES; DNA, BACTERIAL; GENE EXPRESSION; GENETIC VECTORS; MOLECULAR SEQUENCE DATA; PREVOTELLA;

BACTERIA (MICROORGANISMS); PREVOTELLA; PREVOTELLA BRYANTII;

EID: 34447540213     PISSN: 13500872     EISSN: None     Source Type: Journal    
DOI: 10.1099/mic.0.2007/005850-0     Document Type: Article

References (41)

1. Accetto, T. & Avguštin, G. (2001). Non-specific DNases from the rumen bacterium Prevotella bryantii. Folia Microbiol (Praha) 46, 33-35.
2. Accetto, T., Peterka, M. & Avguštin, G. (2005). Type II restriction modification systems of Pre-votella bryantii TCI-1 and Prevotella ruminicola 23 strains and their effect on the efficiency of DNA introduction via electroporation. FEMS Microbiol Lett 247, 177-183.
3. Altschul, S. F., Madden, T. L., Schäffer, A. A., Zhang, J., Zhang, Z., Miller, W. & Lipman, D. J. (1997). Gapped BLAST and PSI-BLAST: A new generation of protein database search programs. Nucleic Acids Res 25, 3389-3402.
4. Avguštin, G., Wallace, R. J. & Flint, H. J. (1997). Phenotypic diversity among ruminal isolates of Prevotella ruminicola: Proposal of Prevotella brevis sp. nov., Prevotella bryantii sp. nov., and Prevotella albensis sp. nov. and redefinition of Prevotella ruminicola. Int J Syst Bacteriol 47, 284-288.
5. Avguštin, G., Ramiak A. & Peterka, M. (2001). Systematics and evolution of ruminal species of the genus Prevotella. Folia Microbiol (Praha) 46, 40-44.
6. Bateman, A., Coin, L., Durbin, R., Finn, R. D., Hollich, V, Griffiths-Jones, S., Khanna, A., Marshall, M., Moxon, S. & other authors (2004). The Pfam protein families database. Nucleic Acids Res 32 (Database issue), D138-Dl4l.
7. Bayley, D. P., Rocha, E. R. & Smith, C. J. (2000). Analysis of cepA and other Bacteroides fragilis genes reveals a unique promoter structure. FEMS Microbiol Lett 193, 149-154.
8. Bendjennat, M., Blanchard, A., Louffi, M., Montagnier, L & Bahraoui, E. (1999). Role of Mycoplasma penetrans endonuclease P40 as a potential pathogenic determinant. Infect Immun 67, 4456-4462.
9. Bendtsen, J. D., Nielsen, H., von Heijne, G. & Brunak S. (2004). Improved prediction of signal peptides: SignalP 3.0. J Mol Biol 340, 783-795.
10. Benedik M. J. & Strych, U. (1998). Serratia marcescens and its extracellular nuclease. FEMS Microbiol Lett 165, 1-13.
11. Blank A., Sugiyama, R. H. & Dekker, C. A. (1982). Activity staining of nucleolytic enzymes after sodium dodecyl sulfate-polyacrylamide gel electrophoresis: Use of aqueous isopropanol to remove detergents from gels. Anal Biochem 120, 267-275.
12. Brook, I. (2004). Microbiology and management of peritonsillar, retropharyngeal, and parapharyngeal abscesses. J Oral Maxillofac Surg 62, 1545-1550.
13. Bryant M. P., Small, N., Bouma, C. & Chu, H. (1958). Bacteroides ruminicola n. sp. and Succinimonas amylolytica, the new genus and species. J Bacteriol 76, 15-23.
14. Daniel, A. S., Martin, J., Vanat L, Whitehead, T. R. & Flint H. J. (1995). Expression of a cloned cellulase xylanase gene from Prevotella ruminicola in Bacteroides vulgatus, Bacteroides uniformis and Pre-votella ruminicola. J Appl Bacteriol 79, 417-424.
15. Dubnau, D. (1999). DNA uptake in bacteria. Annu Rev Microbiol 53, 217-244.
16. Duncan, W. J., Persson, G. R., Sims, T. J., Braham, P., Pack A. R. C. & Page, R. C. (2003). Ovine periodontitis as a potential model for periodontal studies. J Clin Periodontol 30, 63-72.
17. Eckburg, P. B., Bik, E. M., Bernstein, C. N., Purdom, E., Dethlefsen, L., Sargent M., Gill, S. R., Nelson, K E & Reiman, D. A. (2005). Diversity of the human intestinal microbial flora. Science 308, 1635-1638.
18. Edwards, J. E., McEwan, N. R., Travis, A. J. & Wallace, R. J. (2004). 16S rDNA library-based analysis of ruminal bacterial diversity. Antonie Van Leeuwenhoek 86, 263-281.
19. Enwonwu, C. O,, Falker, W. A., Jr & Phillips, R. S. (2006). Noma (cancrum oris). Lancet 368, 147-156.
20. Focareta, T. & Manning, P. A. (1991). Distinguishing between the extracellular DNases of Vibrio cholerae and development of a transformation system. Mol Microbiol 5, 2547-2555.
21. 14. Appl Environ Microbiol 62, 196-202.
22. Hobson, P. N. (1969). Rumen bacteria. Methods Microbiol 3B, 133-149.
23. Jarvill-Taylor, K J., VanDyk C. & Minion, F. C. (1999). Cloning of mnuA, a membrane nuclease gene of Mycoplasma pulmonis, and analysis of its expression in Escherichia. coli. J Bacteriol 181, 1853-1860.
24. Kolenbrander, P. E., Anderson, R. N., Blehert, D. S., Egland, P. G., Foster, J. S. & Palmer, R. J., Jr (2002). Communication among oral bacteria. Microbiol Mol Biol Rev 66, 486-505.
25. Laser, T. D., Amenuvor, J. Z, Jensen, T. K, Lindecrona, R. H., Boye, M. & Møller, K (2002). Culture-independent analysis of gut bacteria: The pig gastrointestinal tract microbiota revisited. Appl Ensiron Microbiol 68, 673-690.
26. Martin, F. E, Nadkarni, M. A., Jacques, N. A. & Hunter, N. (2002). Quantitative microbiological study of human carious dentine by culture and real-time PCR: Association of anaerobes with histopathological changes in chronic pulpitis. J Clin Microbiol 40, 1698-1704.
27. Mercer, D. K., Patel, S. & Flint H. J. (2001). Sequence analysis of the plasmid pRR12 from the rumen bacterium Prevotella ruminicola 223/M2/7 and the use of pRRI in Prevotella/ Bacteroides shuttle vectors. Plasmid 45, 227-232.
28. 14. J Bacteriol 185, 2219-2226.
29. Paster, B. J., Boches, S. H., Galvin, J. L, Ericson, R. E., Lau, C. N., Levanos, V. A., Sahasrabudhe, A. & Dewhirst F. E. (2001). Bacterial diversity in human subgingival plaque. J Bacteriol 183, 3770-3783.
30. Peterka, M. (2002). Characterization of rrn loci ftom bacterial species Prevotella ruminicola and Prevotella bryantii. PhD thesis, University of Ljubljana, Ljubljana, Slovenia.
31. Provvedi, R., Chen, I. & Dubnau, D. (2001). NucA is required for DNA cleavage during transformation of Bacillus subtilis. Mol Microbiol 40, 634-644.
32. Rangarajan, E. S. & Shankar, V. (2001). Sugar non-specific endonucleases. FEMS Microbiol Rev 25, 583-613.
33. Rosenthal, A. L. & Lacks, S. A. (1977). Nuclease detection in SDS-polyacrylamide gel electrophoresis. Anal Biochem 80, 76-90.
34. Sambrook, J. & Russel, D. W. (2001). Molecular Cloning. a Laboratory Manual, 3rd edn. Cold Spring Harbor, NY: Cold Spring Harbor Laboratory.
35. 14. Appl Environ Microbiol 57, 2114-2120.
36. Takahashi, L, Hayano, D., Asayama, M., Masahiro, F., Watahild, M. & Shirai, M. (1996). Restriction barrier composed of an extracellular nuclease and restriction endonuclease in the unicellular cyanobacterium Microcystis sp. FEMS Microbiol Lett 145, 107-111.
37. Van Gylswyk N. O. (1990). Enumeration and presumptive identification of some functional groups of bacteria in the rumen of dairy cows fed grass silage-based diets. FEMS Microbiol Lett 73, 243-261.
38. Vingadassalom, D., Kolb, A., Mayer, C., Rybkine, T., Collatz, E. & Podglajen, I. (2005). An unusual primary sigma factor in the Bacteroidetes phylum. Mol Microbiol 56, 888-902.
39. Walker, N. D., McEwan, N. R. & Wallace, R. J. (2003). Cloning and functional expression of dipeptidyl peptidase IV from the ruminal bacterium Prevotella albensis M384. Microbiology 149, 2227-2234.
40. Wang, Y., Shoemaker, N. B. & Salyers, A. A. (2004). Regulation of a Bacteroides operon that controls excision and transfer of the conjugative transposon CTnDOT. J Bacteriol 186, 2548-2557.
41. Wu, S. I., Lo, S. K., Shao, C. P., Tsai, H. W. & Hor, L. I. (2001). Cloning and characterization of a periplasmic nuclease of Vibrio vulnificus and its role in preventing uptake of foreign DNA. Appl Environ Microbiol 67, 82-89.