On description of biological sequences by spectral properties of line distance matrices

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Volumn 58, Issue 2, 2007, Pages 301-307

  Jaklič, Gašper ^a   Pisanski, Tomaž ^a,b   Randić, Milan ^c,d  

^a UNIVERSITY OF LJUBLJANA   (Slovenia)

^b UNIVERSITY OF PRIMORSKA   (Slovenia)

^c Drake University   (Slovenia)

^d NONE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 34548636023     PISSN: 03406253     EISSN: None     Source Type: Journal    
DOI: None     Document Type: Conference Paper

References (16)

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2. Demmel, J.W. 1997. Applied numerical linear algebra. SIAM, Philadelphia.
3. Hayden, T.L., Reams, R., Wells, J. 1999. Methods for constructing distance matrices and the inverse eigenvalue problem. Linear Algebra Appl. 295, 97-112.
4. Jeffrey, H.I. 1990. Chaos game representation of gene structure. Nucleic Acid Res. 18, 2163-2170.
5. Krattenthaler, C. 1999. Advanced determinant calculus. Séminaire Lotharingien Combin. 42, (The Andrews Festschrift).
6. Lathrop, R.H. 1994. The protein threading problem with sequence amino acid interaction preferences is NP-complete. Protein Eng. 7, 1059-1068.
7. Nandy, A. 1994. A new graphical representation and analysis of DNA sequence structure, I. Methodology and application to globin gene. Curr. Sci. 66, 309-313.
8. Randić, M., Vračko, M., Nandy, A., Basak, S.C. 2000. On 3-D Representation of DNA Primary Sequences. J. Chem. Inf. Comput. Sci. 40, 1235-1244.
9. Randić, M., Basak, S.C. 2001. Characterization of DNA primary sequences based on the average distances between bases. J. Chem. Inf. Comput. Sci. 41, 561-568.
10. Randić, M., Lerš, N., Plavšić, D. 2003. Analysis of similarity/dissimilarity of DNA sequences based on novel 2-D graphical representation. Chem. Phys. Lett. 371, 202-207.
11. Randić, M., Vračko, M., Zupan, J., Novič, M. 2003. Compact 2-D graphical representation of DNA. Chem. Phys. Lett. 373, 558-562.
12. Randić, M. 2004. 2-D Graphical representation of proteins based on virtual genetic code. SAR & QSAR in Environ. Res. 15, 147-157.
13. Randić, M. 2004. Graphical representation of DNA as a 2-D map. Chem. Phys. Lett. 386, 468-471.
14. Randić, M., Zupan, J. 2004. Highly compact 2-D graphical representation of DNA sequences. SAR & QSAR in Environ. Res. 15, 191-205.
15. Schoenberg, I.J. 1935. Remarks to Maurice Frechet's article Sur la definition axiomatique d'une classe d'espace distancies vectoriellement applicable sur l'espace de Hubert, Ann. Math. 36 (3), 724-732.
16. Trefethen, L.N., Bau, D. 1997. Numerical linear algebra. SIAM, Philadelphia.