-
1
-
-
42449085840
-
Modulating the activity of the peptidyl transferase center of the ribosome
-
Beringer, M. 2008. Modulating the activity of the peptidyl transferase center of the ribosome. RNA 14:795-801.
-
(2008)
RNA
, vol.14
, pp. 795-801
-
-
Beringer, M.1
-
2
-
-
0014980473
-
Catabolite repression of tryptophanase in Escherichia coli
-
Botsford, J. L., and R. D. DeMoss. 1971. Catabolite repression of tryptophanase in Escherichia coli. J. Bacteriol. 105:303-312.
-
(1971)
J. Bacteriol
, vol.105
, pp. 303-312
-
-
Botsford, J.L.1
DeMoss, R.D.2
-
3
-
-
0015264764
-
Escherichia coli tryptophanase in the enteric environment
-
Botsford, J. L., and R. D. DeMoss, 1972. Escherichia coli tryptophanase in the enteric environment. J. Bacteriol. 109:74-80.
-
(1972)
J. Bacteriol
, vol.109
, pp. 74-80
-
-
Botsford, J.L.1
DeMoss, R.D.2
-
4
-
-
2442611939
-
Carbon nutrition of Escherichia coli in the mouse intestine
-
Chang, D. E., D. J. Smalley, D. L. Tucker, M. P. Leatham, W. E. Norris, S. J. Stevenson, A. B. Anderson, J. E. Grissom, D. C. Laux, P. S. Cohen, and T. Conway. 2004. Carbon nutrition of Escherichia coli in the mouse intestine. Proc. Natl. Acad. Sci. USA 101:7427-7432.
-
(2004)
Proc. Natl. Acad. Sci. USA
, vol.101
, pp. 7427-7432
-
-
Chang, D.E.1
Smalley, D.J.2
Tucker, D.L.3
Leatham, M.P.4
Norris, W.E.5
Stevenson, S.J.6
Anderson, A.B.7
Grissom, J.E.8
Laux, D.C.9
Cohen, P.S.10
Conway, T.11
-
5
-
-
33748767376
-
Rho-dependent terminators and transcription termination
-
Ciampi, M. S. 2006. Rho-dependent terminators and transcription termination. Microbiology 152:2515-2528.
-
(2006)
Microbiology
, vol.152
, pp. 2515-2528
-
-
Ciampi, M.S.1
-
6
-
-
33644851066
-
Changes produced by bound tryptophan in the ribosome peptidyl transferase center in response to TnaC, a nascent leader peptide
-
Cruz-Vera, L. R., M. Gong, and C. Yanofsky. 2006. Changes produced by bound tryptophan in the ribosome peptidyl transferase center in response to TnaC, a nascent leader peptide. Proc. Natl. Acad. Sci. USA 103:3598-3603.
-
(2006)
Proc. Natl. Acad. Sci. USA
, vol.103
, pp. 3598-3603
-
-
Cruz-Vera, L.R.1
Gong, M.2
Yanofsky, C.3
-
7
-
-
34247868068
-
Ribosomal features essential for tna operon induction: Tryptophan binding at the peptidyl transferase center
-
Cruz-Vera, L. R., A. New, C. Squires, and C. Yanofsky. 2007. Ribosomal features essential for tna operon induction: tryptophan binding at the peptidyl transferase center. J. Bacteriol. 189:3140-3146.
-
(2007)
J. Bacteriol
, vol.189
, pp. 3140-3146
-
-
Cruz-Vera, L.R.1
New, A.2
Squires, C.3
Yanofsky, C.4
-
8
-
-
23044445236
-
Features of ribosome-peptidyl-tRNA interactions essential for tryptophan induction of tna operon expression
-
Cruz-Vera, L. R., S. Rajagopal, C. Squires, and C. Yanofsky. 2005. Features of ribosome-peptidyl-tRNA interactions essential for tryptophan induction of tna operon expression. Mol. Cell 19:333-343.
-
(2005)
Mol. Cell
, vol.19
, pp. 333-343
-
-
Cruz-Vera, L.R.1
Rajagopal, S.2
Squires, C.3
Yanofsky, C.4
-
9
-
-
47249162502
-
Pro participate in tryptophan induction of tna operon expression
-
Pro participate in tryptophan induction of tna operon expression. J. Bacteriol. 190:4791-4797.
-
(2008)
J. Bacteriol
, vol.190
, pp. 4791-4797
-
-
Cruz-Vera, L.R.1
Yanofsky, C.2
-
10
-
-
0019825937
-
Nucleotide sequence of the structural gene for tryptophanase of Escherichia coli K-12
-
Deeley, M. C., and C. Yanofsky. 1981. Nucleotide sequence of the structural gene for tryptophanase of Escherichia coli K-12. J. Bacteriol. 147:787-796.
-
(1981)
J. Bacteriol
, vol.147
, pp. 787-796
-
-
Deeley, M.C.1
Yanofsky, C.2
-
11
-
-
0019982963
-
Transcription initiation at the tryptophanase promoter of Escherichia coli K-12
-
Deeley, M. C., and C. Yanofsky. 1982. Transcription initiation at the tryptophanase promoter of Escherichia coli K-12. J. Bacteriol. 151:942-951.
-
(1982)
J. Bacteriol
, vol.151
, pp. 942-951
-
-
Deeley, M.C.1
Yanofsky, C.2
-
12
-
-
1642570293
-
A nascent polypeptide domain that can regulate translation elongation
-
Fang, P., C. C. Spevak, C. Wu, and M. S. Sachs. 2004. A nascent polypeptide domain that can regulate translation elongation. Proc. Natl. Acad. Sci. USA 101:4059-4064.
-
(2004)
Proc. Natl. Acad. Sci. USA
, vol.101
, pp. 4059-4064
-
-
Fang, P.1
Spevak, C.C.2
Wu, C.3
Sachs, M.S.4
-
13
-
-
0027211720
-
Inhibition of expression of the tryptophanase operon in Escherichia coli by extrachromosomal copies of the tna leader region
-
Gish, K., and C. Yanofsky. 1993. Inhibition of expression of the tryptophanase operon in Escherichia coli by extrachromosomal copies of the tna leader region. J. Bacteriol. 175:3380-3387.
-
(1993)
J. Bacteriol
, vol.175
, pp. 3380-3387
-
-
Gish, K.1
Yanofsky, C.2
-
14
-
-
0028827520
-
Evidence suggesting cis action by the TnaC leader peptide in regulating transcription attenuation in the tryptophanase operon of Escherichia coli
-
Gish, K., and C. Yanofsky. 1995. Evidence suggesting cis action by the TnaC leader peptide in regulating transcription attenuation in the tryptophanase operon of Escherichia coli. J. Bacteriol. 177:7245-7254.
-
(1995)
J. Bacteriol
, vol.177
, pp. 7245-7254
-
-
Gish, K.1
Yanofsky, C.2
-
15
-
-
0018908908
-
Regulation of Klebsiella pneumoniae hut operons by oxygen
-
Goldberg, R. B., and R. Hanau. 1980. Regulation of Klebsiella pneumoniae hut operons by oxygen. J. Bacteriol. 141:745-750.
-
(1980)
J. Bacteriol
, vol.141
, pp. 745-750
-
-
Goldberg, R.B.1
Hanau, R.2
-
16
-
-
0025369085
-
Trp translation of leader peptide codon 12 and other factors that regulate expression of the tryptophanase operon
-
Trp translation of leader peptide codon 12 and other factors that regulate expression of the tryptophanase operon. J. Bacteriol. 172:3100-3107.
-
(1990)
J. Bacteriol
, vol.172
, pp. 3100-3107
-
-
Gollnick, P.1
Yanofsky, C.2
-
18
-
-
0035910426
-
Reproducing tna operon regulation in vitro in an S-30 system. Tryptophan induction inhibits cleavage of TnaC peptidyl-tRNA
-
Gong, F., and C. Yanofsky. 2001. Reproducing tna operon regulation in vitro in an S-30 system. Tryptophan induction inhibits cleavage of TnaC peptidyl-tRNA. J. Biol. Chem. 276:1974-1983.
-
(2001)
J. Biol. Chem
, vol.276
, pp. 1974-1983
-
-
Gong, F.1
Yanofsky, C.2
-
19
-
-
0037053345
-
Analysis of tryptophanase operon expression in vitro: Accumulation of TnaC-peptidyl-tRNA in a release factor 2-depleted S-30 extract prevents Rho factor action, simulating induction
-
Gong, F., and C. Yanofsky. 2002. Analysis of tryptophanase operon expression in vitro: accumulation of TnaC-peptidyl-tRNA in a release factor 2-depleted S-30 extract prevents Rho factor action, simulating induction. J. Biol. Chem. 277:17095-17100.
-
(2002)
J. Biol. Chem
, vol.277
, pp. 17095-17100
-
-
Gong, F.1
Yanofsky, C.2
-
20
-
-
0037072627
-
Instruction of translating ribosome by nascent peptide
-
Gong, F., and C. Yanofsky. 2002. Instruction of translating ribosome by nascent peptide. Science 297:1864-1867.
-
(2002)
Science
, vol.297
, pp. 1864-1867
-
-
Gong, F.1
Yanofsky, C.2
-
21
-
-
0142152455
-
A transcriptional pause synchronizes translation with transcription in the tryptophanase operon leader region
-
Gong, F., and C. Yanofsky. 2003. A transcriptional pause synchronizes translation with transcription in the tryptophanase operon leader region. J. Bacteriol. 185:6472-6476.
-
(2003)
J. Bacteriol
, vol.185
, pp. 6472-6476
-
-
Gong, F.1
Yanofsky, C.2
-
22
-
-
34247876081
-
Ribosome recycling factor and release factor 3 action promotes TnaC-peptidyl-tRNA dropoff and relieves ribosome stalling during tryptophan induction of tna operon expression in Escherichia coli
-
Gong, M., L. R. Cruz-Vera, and C. Yanofsky. 2007. Ribosome recycling factor and release factor 3 action promotes TnaC-peptidyl-tRNA dropoff and relieves ribosome stalling during tryptophan induction of tna operon expression in Escherichia coli. J. Bacteriol. 189:3147-3155.
-
(2007)
J. Bacteriol
, vol.189
, pp. 3147-3155
-
-
Gong, M.1
Cruz-Vera, L.R.2
Yanofsky, C.3
-
24
-
-
0035984639
-
Regulation by transcription attenuation in bacteria: How RNA provides instructions for transcription termination/antitermination decisions
-
Henkin, T. M., and C. Yanofsky. 2002. Regulation by transcription attenuation in bacteria: how RNA provides instructions for transcription termination/antitermination decisions. Bioessays 24:700-707.
-
(2002)
Bioessays
, vol.24
, pp. 700-707
-
-
Henkin, T.M.1
Yanofsky, C.2
-
25
-
-
33845922611
-
Evolutionary changes in the fungal carbamoyl-phosphate synthetase small subunit gene and its associated upstream open reading frame
-
Hood, H. M., C. C. Spevak, and M. S. Sachs. 2007. Evolutionary changes in the fungal carbamoyl-phosphate synthetase small subunit gene and its associated upstream open reading frame. Fungal Genet. Biol. 44:93-104.
-
(2007)
Fungal Genet. Biol
, vol.44
, pp. 93-104
-
-
Hood, H.M.1
Spevak, C.C.2
Sachs, M.S.3
-
26
-
-
0027969172
-
-
Isaacs, H., Jr., D. Chao, C. Yanofsky, and M. H. Saier, Jr. 1994. Mechanism of catabolite repression of tryptophanase synthesis in Escherichia coli. Microbiology 140:2125-2134.
-
Isaacs, H., Jr., D. Chao, C. Yanofsky, and M. H. Saier, Jr. 1994. Mechanism of catabolite repression of tryptophanase synthesis in Escherichia coli. Microbiology 140:2125-2134.
-
-
-
-
27
-
-
0026733332
-
Characterization of the tryptophanase operon of Proteus vulgaris. Cloning, nucleotide sequence, amino acid homology, and in vitro synthesis of the leader peptide and regulatory analysis
-
Kamath, A. V., and C. Yanofsky. 1992. Characterization of the tryptophanase operon of Proteus vulgaris. Cloning, nucleotide sequence, amino acid homology, and in vitro synthesis of the leader peptide and regulatory analysis. J. Biol. Chem. 267:19978-19985.
-
(1992)
J. Biol. Chem
, vol.267
, pp. 19978-19985
-
-
Kamath, A.V.1
Yanofsky, C.2
-
28
-
-
0031038657
-
Roles of the tnaC-tnaA spacer region and Rho factor in regulating expression of the tryptophanase operon of Proteus vulgaris
-
Kamath, A. V., and C. Yanofsky. 1997. Roles of the tnaC-tnaA spacer region and Rho factor in regulating expression of the tryptophanase operon of Proteus vulgaris. J. Bacteriol. 179:1780-1786.
-
(1997)
J. Bacteriol
, vol.179
, pp. 1780-1786
-
-
Kamath, A.V.1
Yanofsky, C.2
-
29
-
-
0034710992
-
DNA microarray analysis of gene expression in response to physiological and genetic changes that affect tryptophan metabolism in Escherichia coli
-
Khodursky, A. B., B. J. Peter, N. R. Cozzarelli, D. Botstein, P. O. Brown, and C. Yanofsky. 2000. DNA microarray analysis of gene expression in response to physiological and genetic changes that affect tryptophan metabolism in Escherichia coli. Proc. Natl. Acad. Sci. USA 97:12170-12175.
-
(2000)
Proc. Natl. Acad. Sci. USA
, vol.97
, pp. 12170-12175
-
-
Khodursky, A.B.1
Peter, B.J.2
Cozzarelli, N.R.3
Botstein, D.4
Brown, P.O.5
Yanofsky, C.6
-
30
-
-
0031056726
-
Regulation of the Escherichia coli tna operon: Nascent leader peptide control at the tnaC stop codon
-
Konan, K. V., and C. Yanofsky. 1997. Regulation of the Escherichia coli tna operon: nascent leader peptide control at the tnaC stop codon. J. Bacteriol. 179:1774-1779.
-
(1997)
J. Bacteriol
, vol.179
, pp. 1774-1779
-
-
Konan, K.V.1
Yanofsky, C.2
-
31
-
-
0033024156
-
Role of ribosome release in regulation of tna operon expression in Escherichia coli
-
Konan, K. V., and C. Yanofsky. 1999. Role of ribosome release in regulation of tna operon expression in Escherichia coli. J. Bacteriol. 181:1530-1536.
-
(1999)
J. Bacteriol
, vol.181
, pp. 1530-1536
-
-
Konan, K.V.1
Yanofsky, C.2
-
32
-
-
0033933221
-
Rho-dependent transcription termination in the tna operon of Escherichia coli: Roles of the boxA sequence and the rut site
-
Konan, K. V., and C. Yanofsky. 2000. Rho-dependent transcription termination in the tna operon of Escherichia coli: roles of the boxA sequence and the rut site. J. Bacteriol. 182:3981- 3988.
-
(2000)
J. Bacteriol
, vol.182
, pp. 3981-3988
-
-
Konan, K.V.1
Yanofsky, C.2
-
33
-
-
0029982204
-
Ribosome regulation by the nascent peptide
-
Lovett, P. S., and E. J. Rogers. 1996. Ribosome regulation by the nascent peptide. Microbiol. Rev. 60:366-385.
-
(1996)
Microbiol. Rev
, vol.60
, pp. 366-385
-
-
Lovett, P.S.1
Rogers, E.J.2
-
34
-
-
30944437007
-
Nascent peptide in the "birth canal" of the ribosome
-
Mankin, A. S. 2006. Nascent peptide in the "birth canal" of the ribosome. Trends Biochem. Sci. 31:11-13.
-
(2006)
Trends Biochem. Sci
, vol.31
, pp. 11-13
-
-
Mankin, A.S.1
-
35
-
-
37549003962
-
Peptidyl-prolyl-tRNA at the ribosomal P-site reacts poorly with puromycin
-
Muto, H., and K. Ito. 2008. Peptidyl-prolyl-tRNA at the ribosomal P-site reacts poorly with puromycin. Biochem. Biophys. Res. Commun. 366:1043-1047.
-
(2008)
Biochem. Biophys. Res. Commun
, vol.366
, pp. 1043-1047
-
-
Muto, H.1
Ito, K.2
-
36
-
-
0037310005
-
Making sense of mimic in translation termination
-
Nakamura, Y., and K. Ito. 2003. Making sense of mimic in translation termination. Trends Biochem. Sci. 28:99-105.
-
(2003)
Trends Biochem. Sci
, vol.28
, pp. 99-105
-
-
Nakamura, Y.1
Ito, K.2
-
37
-
-
1842506046
-
Control of SecA and SecM translation by protein secretion
-
Nakatogawa, H., A. Murakami, and K. Ito. 2004. Control of SecA and SecM translation by protein secretion. Curr. Opin. Microbiol. 7:145-150.
-
(2004)
Curr. Opin. Microbiol
, vol.7
, pp. 145-150
-
-
Nakatogawa, H.1
Murakami, A.2
Ito, K.3
-
38
-
-
0028095674
-
Mutations in NADH:ubiquinone oxidoreductase of Escherichia coli affect growth on mixed amino acids
-
Prüss, B. M., J. M. Nelms, C. Park, and A. J. Wolfe. 1994. Mutations in NADH:ubiquinone oxidoreductase of Escherichia coli affect growth on mixed amino acids. J. Bacteriol. 176:2143-2150.
-
(1994)
J. Bacteriol
, vol.176
, pp. 2143-2150
-
-
Prüss, B.M.1
Nelms, J.M.2
Park, C.3
Wolfe, A.J.4
-
39
-
-
0025810777
-
A new family of integral membrane proteins involved in transport of aromatic amino acids in Escherichia coli
-
Sarsero, J. P., P. J. Wookey, P. Gollnick, C. Yanofsky, and A. J. Pittard. 1991. A new family of integral membrane proteins involved in transport of aromatic amino acids in Escherichia coli. J. Bacteriol. 173:3231-3234.
-
(1991)
J. Bacteriol
, vol.173
, pp. 3231-3234
-
-
Sarsero, J.P.1
Wookey, P.J.2
Gollnick, P.3
Yanofsky, C.4
Pittard, A.J.5
-
40
-
-
0016418469
-
Tryptophanase: Structure, catalytic activities, and mechanism of action
-
Snell, E. E. 1975. Tryptophanase: structure, catalytic activities, and mechanism of action. Adv. Enzymol. Relat. Areas Mol. Biol. 42:287-333.
-
(1975)
Adv. Enzymol. Relat. Areas Mol. Biol
, vol.42
, pp. 287-333
-
-
Snell, E.E.1
-
41
-
-
0036062240
-
pH-dependent expression of periplasmic proteins and amino acid catabolism in Escherichia coli
-
Stancik, L. M., D. M. Stancik, B. Schmidt, D. M. Barnhart, Y. N. Yoncheva, and J. L. Slonczewski. 2002. pH-dependent expression of periplasmic proteins and amino acid catabolism in Escherichia coli. J. Bacteriol. 184:4246-4258.
-
(2002)
J. Bacteriol
, vol.184
, pp. 4246-4258
-
-
Stancik, L.M.1
Stancik, D.M.2
Schmidt, B.3
Barnhart, D.M.4
Yoncheva, Y.N.5
Slonczewski, J.L.6
-
42
-
-
39749138785
-
A structural understanding of the dynamic ribosome machine
-
Steitz, T. A. 2008. A structural understanding of the dynamic ribosome machine. Nat. Rev. Mol. Cell Biol. 9:242-253.
-
(2008)
Nat. Rev. Mol. Cell Biol
, vol.9
, pp. 242-253
-
-
Steitz, T.A.1
-
43
-
-
0022517404
-
Rho-dependent transcription termination in the tryptophanase operon leader region of Escherichia coli K-12
-
Stewart, V., R. Landick, and C. Yanofsky. 1986. Rho-dependent transcription termination in the tryptophanase operon leader region of Escherichia coli K-12. J. Bacteriol. 166:217-223.
-
(1986)
J. Bacteriol
, vol.166
, pp. 217-223
-
-
Stewart, V.1
Landick, R.2
Yanofsky, C.3
-
44
-
-
0022352611
-
Evidence for transcription antitermination control of tryptophanase operon expression in Escherichia coli K-12
-
Stewart, V., and C. Yanofsky. 1985. Evidence for transcription antitermination control of tryptophanase operon expression in Escherichia coli K-12. J. Bacteriol. 164:731-740.
-
(1985)
J. Bacteriol
, vol.164
, pp. 731-740
-
-
Stewart, V.1
Yanofsky, C.2
-
45
-
-
0022492632
-
Role of leader peptide synthesis in tryptophanase operon expression in Escherichia coli K-12
-
Stewart, V., and C. Yanofsky. 1986. Role of leader peptide synthesis in tryptophanase operon expression in Escherichia coli K-12. J. Bacteriol. 167:383-386.
-
(1986)
J. Bacteriol
, vol.167
, pp. 383-386
-
-
Stewart, V.1
Yanofsky, C.2
-
46
-
-
33745628037
-
The geometry of the ribosomal polypeptide exit tunnel
-
Voss, N. R., M. Gerstein, T. A. Steitz, and P. B. Moore. 2006. The geometry of the ribosomal polypeptide exit tunnel. J. Mol. Biol. 360:893-906.
-
(2006)
J. Mol. Biol
, vol.360
, pp. 893-906
-
-
Voss, N.R.1
Gerstein, M.2
Steitz, T.A.3
Moore, P.B.4
-
47
-
-
0033986936
-
Transcription attenuation: Once viewed as a novel regulatory strategy
-
Yanofsky, C. 2000. Transcription attenuation: once viewed as a novel regulatory strategy. J. Bacteriol. 182:1-8.
-
(2000)
J. Bacteriol
, vol.182
, pp. 1-8
-
-
Yanofsky, C.1
-
48
-
-
0035749312
-
Advancing our knowledge in biochemistry, genetics, and microbiology through studies on tryptophan metabolism
-
Yanofsky, C. 2001. Advancing our knowledge in biochemistry, genetics, and microbiology through studies on tryptophan metabolism. Annu. Rev. Biochem. 70:1-37.
-
(2001)
Annu. Rev. Biochem
, vol.70
, pp. 1-37
-
-
Yanofsky, C.1
-
49
-
-
34447528966
-
RNA-based regulation of genes of tryptophan synthesis and degradation, in bacteria
-
Yanofsky, C. 2007. RNA-based regulation of genes of tryptophan synthesis and degradation, in bacteria. RNA 13:1141-1154.
-
(2007)
RNA
, vol.13
, pp. 1141-1154
-
-
Yanofsky, C.1
-
50
-
-
0029087041
-
Bicyclomycin sensitivity and resistance affect Rho factor-mediated transcription termination in the tna operon of Escherichia coli
-
Yanofsky, C., and V. Horn. 1995. Bicyclomycin sensitivity and resistance affect Rho factor-mediated transcription termination in the tna operon of Escherichia coli. J. Bacteriol. 177:4451- 4456.
-
(1995)
J. Bacteriol
, vol.177
, pp. 4451-4456
-
-
Yanofsky, C.1
Horn, V.2
-
51
-
-
0026006958
-
Physiological studies of tryptophan transport and tryptophanase operon induction in Escherichia coli
-
Yanofsky, C., V. Horn, and P. Gollnick. 1991. Physiological studies of tryptophan transport and tryptophanase operon induction in Escherichia coli. J. Bacteriol. 173:6009-6017.
-
(1991)
J. Bacteriol
, vol.173
, pp. 6009-6017
-
-
Yanofsky, C.1
Horn, V.2
Gollnick, P.3
-
52
-
-
0030013069
-
Loss of overproduction of polypeptide release factor 3 influences expression of the tryptophanase operon of Escherichia coli
-
Yanofsky, C., V. Horn, and Y. Nakamura. 1996. Loss of overproduction of polypeptide release factor 3 influences expression of the tryptophanase operon of Escherichia coli. J. Bacteriol. 178:3755-3762.
-
(1996)
J. Bacteriol
, vol.178
, pp. 3755-3762
-
-
Yanofsky, C.1
Horn, V.2
Nakamura, Y.3
-
53
-
-
0015871909
-
In vitro synthesis of protein in microbial systems
-
Zubay, G. 1973. In vitro synthesis of protein in microbial systems. Annu. Rev. Genet. 7:267-287.
-
(1973)
Annu. Rev. Genet
, vol.7
, pp. 267-287
-
-
Zubay, G.1
|