A mathematical model and a computerized simulation of PCR using complex templates

Nucleic Acids Research

Volumn 24, Issue 18, 1996, Pages 3538-3545

  Rubin, Eitan ^a   Levy, Avraham A ^a  

^a WEIZMANN INSTITUTE OF SCIENCE   (Israel)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; COMPUTER SIMULATION; DATA BASE; DNA SEQUENCE; MATHEMATICAL MODEL; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL;

EID: 0029819518     PISSN: 03051048     EISSN: None     Source Type: Journal    
DOI: 10.1093/nar/24.18.3538     Document Type: Article

References (35)

1. Saiki, R.K., Scharf, S., Faloon, F., Mullis, K.B., Horn, G.T., Erlich, H.A. and Amheim, N. (1985) Science, 230, 1350-1354.
2. Saiki, R.K., Gelfand, D.H., Stoffel, S., Scharf, S.J., Higuchi, R., Horn, G.T., Mullis, K.B. and Erlich, H.A. (1988) Science, 239, 487-491.
3. Carr, K. (1993) Nature, 365, 685.
4. Mullis, K., Faloona, F., Scharf, S., Saiki, R., Horn, G. and Erlich, H. (1986) Cold Spring Harbor Symp. Quant. Biol., 51, 263-273.
5. Innis, M.A. and Davis, H.G. (1990) In Innis, M.A., Gelfand, D.H., Sninsky, J.J. and White, T.J. (eds), PCR protocols. Academic Press Inc., San Diego, pp 3-12.
6. Rychlik, W., Spencer, W.J. and Rhoads, R.E. (1990) Nucleic Acids Res., 18, 6409-6412.
7. Rychlik, W. (1995) Biotechniques, 18, 84-90.
8. Dyachenko, L.B., Chenchik, A.A., Khaspekov, G.L., Tatarenko, A.O. and Bibilashvili, R.S. (1994) Mol. Biol. Eng. Tr., 28, 654-660.
9. Kwok, S., Kellogg, D.E., McKinney, N., Spasic, D., Goda, L., Levenson, C. and Sninsky, J.J. (1990) Nucleic Acids Res., 18, 999-1005.
10. Wu, D.Y., Ugozzoli, L., Pal, B.K., Qian, J. and Wallace, R.B. (1991) DNA Cell Biol, 10, 233-238.
11. Sommer, R. and Tautz, D. (1989) Nucleic Acids Res., 17, 6749.
12. Sakuma, Y. and Nishigaki, K. (1994) J. Biochem. (Tokyo), 116, 736-741.
13. Lowe, T., Shrefkin, J., Yang, S.Q. and Dieffenbach, C.W. (1990) Nucleic Acids Res., 18, 1757-1761.
14. Engels, W.R. (1993) Trends Biochem. Sci., 18, 448-450.
15. Hillier, L. and Green, P. (1991) PCR Methods Appl., 1, 124-128.
16. Lincoln, S.E., Daly, M.J. and Lander, E.S., (1991) PRIMER: A Computer Program for Automatically Selecting PCR Primers (0.5) - program and manuals, MIT Center for Genome Research, Nine Cambridge Center, Cambridge, MA 02142, USA.
17. Mitsuhashi, M., Cooper, A., Ogura, M., Shinagawa, T., Yano, K. and Hosokawa, T. (1994) Nature, 367, 759-761.
18. Montpetit, M.L., Cassol, S., Salas, T. and O'Shaughnessy, M.V. (1992) J. Virol. Methods, 36, 119-128.
19. Cooper, D.L. and Baptist, E.W. (1991) PCR Methods Appl., 1, 57-62.
20. Dujon, B., Alexandraki, D., Andre, B., Ansorge, W., Baladron, V., Ballesta, J., Banrevi, A., Bolle, P.A., Bolotinfukuhara, M., Bossier, P. et al. (1994) Nature, 369, 371-378.
21. Feldmann, H., Aigle, M., Aljinovic, G., Andre, B., Badet, M.C., Barthe, C., Baur, A., Becam, A.M., Biteau, N., Boles, E. et al. (1994) Embo J., 13, 5795-5809.
22. Johnston, M., Andrews, S., Brinkman, R., Cooper, J., Ding, H., Dover, J., Kucaba, T., Hillier, L., Jier, M., Johnston, L. et al. (1994) Science, 265, 2077-2082.
23. Oliver, S.G., Vanderaart, Q., Agostonicarbone, M.L., Aigle, M., Alberghina, L., Alexandraki, D., Antoine, G., Anwar, R., Ballesta, J., Benit, P. et al. (1992) Nature, 357, 38-46.
24. Wilson, R., Ainscough, R., Anderson, K., Baynes, C., Berks, M., Bonfield, J., Burton, J., C, o.M., Copsey, T., Cooper, J. et al. (1994) Nature, 368, 32-38.
25. Griffais, R., Andre, P.M. and Thibon, M. (1991) Nucleic Acids Res., 19, 3887-3891.
26. He, Q., Marjamaki, M., Soini, H., Mertsola, J. and Viljanen, M.K. (1994) Biotechniques, 17, 82.
27. Karlin, S. and Cardon, L.R. (1994)Annu. Rev. Micro., 48, 619-654.
28. Welsh, J., Chada, K., Dalal, S.S., Cheng, R., Ralph, D. and McClelland, M. (1992) Nucleic Acids Res., 20, 4965-4970.
29. Birkenmeier, E.H., Schneider, U. and Thurston, S.J. (1992) Mamm. Genome, 3, 537-545.
30. Angov, E. and Cameriniotero, R.D. (1994) J. Bacteriol, 176, 1405-1412.
31. Lucas, K., Busch, M., Mossinger, S. and Thompson, J.A. (1991) Comput. Appl. Biosci., 7, 525-529.
32. Dopazo, J., Rodriguez, A., Saiz, J.C. and Sobrino, F. (1993) Comput. Appl. Biosci., 9, 123-125.
33. Eberhardt, N.L. (1992) Biotechniques, 13, 914-917.
34. Grob, U. and Gartmann, C.J. (1991) Comput. Appl. Biosci., 7, 379-381.
35. Rychlik, W. and Rhoads, R.E. (1989) Nucleic Acids Res., 17, 8543-8551.