-
1
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
Altschul, S. F., T. L. Madden, A. A. Schaffer, J. Zhang, Z. Zhang, W. Miller, and D. J. Lipman. 1997. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res. 25:3389-3402.
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schaffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
2
-
-
0034110937
-
Diversity of Salmonella strains isolated from the aquatic environment as determined by serotyping and amplification of the ribosomal DNA spacer regions
-
Baudart, J., K. Lemarchand, A. Brisabois, and P. Lebaron. 2000. Diversity of Salmonella strains isolated from the aquatic environment as determined by serotyping and amplification of the ribosomal DNA spacer regions. Appl. Environ. Microbiol. 66:1544-1552.
-
(2000)
Appl. Environ. Microbiol
, vol.66
, pp. 1544-1552
-
-
Baudart, J.1
Lemarchand, K.2
Brisabois, A.3
Lebaron, P.4
-
3
-
-
0015402145
-
Salmonellae and Edwardsiella tarda in gull feces: A source of contamination in fish processing plants
-
Berg, R. W., and A. W. Anderson. 1972. Salmonellae and Edwardsiella tarda in gull feces: a source of contamination in fish processing plants. Appl. Microbiol. 24:501-503.
-
(1972)
Appl. Microbiol
, vol.24
, pp. 501-503
-
-
Berg, R.W.1
Anderson, A.W.2
-
4
-
-
0033774937
-
A PCR assay to discriminate human and ruminant feces on the basis of host differences in Bacteroides-Prevotella genes encoding 16S rRNA
-
Bernhard, A. E., and K. G. Field. 2000. A PCR assay to discriminate human and ruminant feces on the basis of host differences in Bacteroides-Prevotella genes encoding 16S rRNA. Appl. Environ. Microbiol. 66:4571-4574.
-
(2000)
Appl. Environ. Microbiol
, vol.66
, pp. 4571-4574
-
-
Bernhard, A.E.1
Field, K.G.2
-
5
-
-
34547470027
-
Using DNA suspension arrays to identify library-independent markers for bacterial source tracking
-
Call, D. R., D. M. Satterwhite, and M. Soule. 2007. Using DNA suspension arrays to identify library-independent markers for bacterial source tracking. Water Res. 41:3740-3746.
-
(2007)
Water Res
, vol.41
, pp. 3740-3746
-
-
Call, D.R.1
Satterwhite, D.M.2
Soule, M.3
-
6
-
-
0015063009
-
Bacterial and fungal flora of seagull droppings in Jersey
-
Cragg, J., and Y. M. Clayton. 1971. Bacterial and fungal flora of seagull droppings in Jersey. J. Clin. Pathol. 24:317-319.
-
(1971)
J. Clin. Pathol
, vol.24
, pp. 317-319
-
-
Cragg, J.1
Clayton, Y.M.2
-
7
-
-
4644301880
-
Rapid estimation of numbers of fecal Bacteroidetes by use of a quantitative PCR assay for 16S rRNA genes
-
Dick, L. K., and K. G. Field. 2004. Rapid estimation of numbers of fecal Bacteroidetes by use of a quantitative PCR assay for 16S rRNA genes. Appl. Environ. Microbiol. 70:5695-5697.
-
(2004)
Appl. Environ. Microbiol
, vol.70
, pp. 5695-5697
-
-
Dick, L.K.1
Field, K.G.2
-
8
-
-
36248992961
-
Assessment of the 16S-23S rDNA intergenic spacer region in Enterococcus spp. for microbial source tracking
-
Dickerson, J. W., Jr., J. B. Crozier, C. Hagedorn, and A. Hassall. 2007. Assessment of the 16S-23S rDNA intergenic spacer region in Enterococcus spp. for microbial source tracking. J. Environ. Qual. 36:1661-1669.
-
(2007)
J. Environ. Qual
, vol.36
, pp. 1661-1669
-
-
Dickerson Jr., J.W.1
Crozier, J.B.2
Hagedorn, C.3
Hassall, A.4
-
9
-
-
34250858808
-
High prevalence of antimicrobial-resistant genes and integrons in Escherichia coli isolates from black-headed gulls in the Czech Republic
-
Dolejska, M., A. Cizek, and I. Literak. 2007. High prevalence of antimicrobial-resistant genes and integrons in Escherichia coli isolates from black-headed gulls in the Czech Republic. J. Appl. Microbiol. 103:11-19.
-
(2007)
J. Appl. Microbiol
, vol.103
, pp. 11-19
-
-
Dolejska, M.1
Cizek, A.2
Literak, I.3
-
10
-
-
34547401084
-
Multiple lines of evidence to identify the sources of fecal pollution at a freshwater beach in Hamilton Harbour, Lake Ontario
-
Edge, T. A., and S. Hill. 2007. Multiple lines of evidence to identify the sources of fecal pollution at a freshwater beach in Hamilton Harbour, Lake Ontario. Water Res. 41:3585-3594.
-
(2007)
Water Res
, vol.41
, pp. 3585-3594
-
-
Edge, T.A.1
Hill, S.2
-
11
-
-
0037541053
-
Abundance and characteristics of the recreational water quality indicator bacteria Escherichia coli and enterococci in gull faeces
-
Fogarty, L. R., S. K. Haack, M. J. Wolcott, and R. L. Whitman. 2003. Abundance and characteristics of the recreational water quality indicator bacteria Escherichia coli and enterococci in gull faeces. J. Appl. Microbiol. 94:865-878.
-
(2003)
J. Appl. Microbiol
, vol.94
, pp. 865-878
-
-
Fogarty, L.R.1
Haack, S.K.2
Wolcott, M.J.3
Whitman, R.L.4
-
12
-
-
26844510666
-
Comparison of Bacteroides-Prevotella 16S rRNA genetic markers for fecal samples from different animal species
-
Fogarty, L. R., and M. A. Voytek. 2005. Comparison of Bacteroides-Prevotella 16S rRNA genetic markers for fecal samples from different animal species. Appl. Environ. Microbiol. 71:5999-6007.
-
(2005)
Appl. Environ. Microbiol
, vol.71
, pp. 5999-6007
-
-
Fogarty, L.R.1
Voytek, M.A.2
-
13
-
-
33746060152
-
Helicobacter anseris sp. nov. and Helicobacter brantae sp. nov., isolated from feces of resident Canada geese in the greater Boston area
-
Fox, J. G., N. S. Taylor, S. Howe, M. Tidd, S. Xu, B. J. Paster, and F. E. Dewhirst. 2006. Helicobacter anseris sp. nov. and Helicobacter brantae sp. nov., isolated from feces of resident Canada geese in the greater Boston area. Appl. Environ. Microbiol. 72:4633-4637.
-
(2006)
Appl. Environ. Microbiol
, vol.72
, pp. 4633-4637
-
-
Fox, J.G.1
Taylor, N.S.2
Howe, S.3
Tidd, M.4
Xu, S.5
Paster, B.J.6
Dewhirst, F.E.7
-
14
-
-
21244437959
-
Use of composite data sets for source-tracking enterococci in the water column and shoreline interstitial waters on Pensacola Beach, Florida
-
Genthner, F. J., J. B. James, D. F. Yates, and S. D. Friedman. 2005. Use of composite data sets for source-tracking enterococci in the water column and shoreline interstitial waters on Pensacola Beach, Florida. Mar. Pollut. Bull. 50:724-732.
-
(2005)
Mar. Pollut. Bull
, vol.50
, pp. 724-732
-
-
Genthner, F.J.1
James, J.B.2
Yates, D.F.3
Friedman, S.D.4
-
15
-
-
0020382639
-
The aerobic bacterial intestinal flora of various wintering geese species
-
Holländer, R. 1982. The aerobic bacterial intestinal flora of various wintering geese species. Zentralbl. Bakteriol. Mikrobiol. Hyg. A 252:394-400.
-
(1982)
Zentralbl. Bakteriol. Mikrobiol. Hyg. A
, vol.252
, pp. 394-400
-
-
Holländer, R.1
-
16
-
-
5044240973
-
Bellerophon: A program to detect chimeric sequences in multiple sequence alignments
-
Huber, T., G. Faulkner, and P. Hugenholtz. 2004. Bellerophon: a program to detect chimeric sequences in multiple sequence alignments. Bioinformatics 20:2317-2319.
-
(2004)
Bioinformatics
, vol.20
, pp. 2317-2319
-
-
Huber, T.1
Faulkner, G.2
Hugenholtz, P.3
-
17
-
-
10444290567
-
Integral strategy for evaluation of fecal indicator performance in bird-influenced saline inland waters
-
Kirschner, A. K., T. C. Zechmeister, G. G. Kavka, C. Beiwl, A. Herzig, R. L. Mach, and A. H. Farnleitner. 2004. Integral strategy for evaluation of fecal indicator performance in bird-influenced saline inland waters. Appl. Environ. Microbiol. 70:7396-7403.
-
(2004)
Appl. Environ. Microbiol
, vol.70
, pp. 7396-7403
-
-
Kirschner, A.K.1
Zechmeister, T.C.2
Kavka, G.G.3
Beiwl, C.4
Herzig, A.5
Mach, R.L.6
Farnleitner, A.H.7
-
18
-
-
37349004076
-
Influenza in migratory birds and evidence of limited intercontinental virus exchange
-
Krauss, S., C. A. Obert, J. Franks, D. Walker, K. Jones, P. Seiler, L. Niles, S. P. Pryor, J. C. Obenauer, C. W. Naeve, L. Widjaja, R. J. Webby, and R. G. Webster. 2007. Influenza in migratory birds and evidence of limited intercontinental virus exchange. PLoS Pathog. 3:e167.
-
(2007)
PLoS Pathog
, vol.3
-
-
Krauss, S.1
Obert, C.A.2
Franks, J.3
Walker, D.4
Jones, K.5
Seiler, P.6
Niles, L.7
Pryor, S.P.8
Obenauer, J.C.9
Naeve, C.W.10
Widjaja, L.11
Webby, R.J.12
Webster, R.G.13
-
19
-
-
0036658557
-
Prevalence of Escherichia coli serogroups and human virulence factors in faeces of urban Canada geese (Branta canadensis)
-
Kullas, H., M. Coles, J. Rhyan, and L. Clark. 2002. Prevalence of Escherichia coli serogroups and human virulence factors in faeces of urban Canada geese (Branta canadensis). Int. J. Environ. Health Res. 12:153-162.
-
(2002)
Int. J. Environ. Health Res
, vol.12
, pp. 153-162
-
-
Kullas, H.1
Coles, M.2
Rhyan, J.3
Clark, L.4
-
20
-
-
33847730305
-
Assessment of fecal pollution sources in a small northern-plains watershed using PCR and phylogenetic analyses of Bacteroidetes 16S rRNA gene
-
Lamendella, R., J. W. Domingo, D. B. Oerther, J. R. Vogel, and D. M. Stoeckel. 2007. Assessment of fecal pollution sources in a small northern-plains watershed using PCR and phylogenetic analyses of Bacteroidetes 16S rRNA gene. FEMS Microbiol. Ecol. 59:651-660.
-
(2007)
FEMS Microbiol. Ecol
, vol.59
, pp. 651-660
-
-
Lamendella, R.1
Domingo, J.W.2
Oerther, D.B.3
Vogel, J.R.4
Stoeckel, D.M.5
-
21
-
-
33244482451
-
-
Lawson, P. A., M. D. Collins, E. Falsen, and G. Foster. 2006. Catellicoccus marimammalium gen. nov., sp. nov., a novel gram-positive, catalase-negative, coccus-shaped bacterium from porpoise and grey seal. Int. J. Syst. Evol. Microbiol. 56:429-432.
-
Lawson, P. A., M. D. Collins, E. Falsen, and G. Foster. 2006. Catellicoccus marimammalium gen. nov., sp. nov., a novel gram-positive, catalase-negative, coccus-shaped bacterium from porpoise and grey seal. Int. J. Syst. Evol. Microbiol. 56:429-432.
-
-
-
-
22
-
-
0242489005
-
Diversity and succession of the intestinal bacterial community of the maturing broiler chicken
-
Lu, J., U. Idris, B. Harmon, C. Hofacre, J. J. Maurer, and M. D. Lee. 2003. Diversity and succession of the intestinal bacterial community of the maturing broiler chicken. Appl. Environ. Microbiol. 69:6816-6824.
-
(2003)
Appl. Environ. Microbiol
, vol.69
, pp. 6816-6824
-
-
Lu, J.1
Idris, U.2
Harmon, B.3
Hofacre, C.4
Maurer, J.J.5
Lee, M.D.6
-
23
-
-
34547501670
-
Identification of chicken-specific fecal microbial sequences using a metagenomic approach
-
Lu, J., J. Santo Domingo, and O. C. Shanks. 2007. Identification of chicken-specific fecal microbial sequences using a metagenomic approach. Water Res. 41:3561-3574.
-
(2007)
Water Res
, vol.41
, pp. 3561-3574
-
-
Lu, J.1
Santo Domingo, J.2
Shanks, O.C.3
-
24
-
-
0033778847
-
Detection and characterization of Shiga toxin-producing Escherichia coli from seagulls
-
Makino, S., H. Kobori, H. Asakura, M. Watarai, T. Shirahata, T. Ikeda, K. Takeshi, and T. Tsukamoto. 2000. Detection and characterization of Shiga toxin-producing Escherichia coli from seagulls. Epidemiol. Infect. 125:55-61.
-
(2000)
Epidemiol. Infect
, vol.125
, pp. 55-61
-
-
Makino, S.1
Kobori, H.2
Asakura, H.3
Watarai, M.4
Shirahata, T.5
Ikeda, T.6
Takeshi, K.7
Tsukamoto, T.8
-
25
-
-
0036841520
-
Development of 16S rRNA-gene-targeted group-specific primers for the detection and identification of predominant bacteria in human feces
-
Matsuki, T., K. Watanabe, J. Fujimoto, Y. Miyamoto, T. Takada, K. Matsumoto, H. Oyaizu, and R. Tanaka. 2002. Development of 16S rRNA-gene-targeted group-specific primers for the detection and identification of predominant bacteria in human feces. Appl. Environ. Microbiol. 68:5445-5451.
-
(2002)
Appl. Environ. Microbiol
, vol.68
, pp. 5445-5451
-
-
Matsuki, T.1
Watanabe, K.2
Fujimoto, J.3
Miyamoto, Y.4
Takada, T.5
Matsumoto, K.6
Oyaizu, H.7
Tanaka, R.8
-
26
-
-
4143079488
-
Genetic diversity of Escherichia coli isolated from urban rivers and beach water
-
McLellan, S. L. 2004. Genetic diversity of Escherichia coli isolated from urban rivers and beach water. Appl. Environ. Microbiol. 70:4658-4665.
-
(2004)
Appl. Environ. Microbiol
, vol.70
, pp. 4658-4665
-
-
McLellan, S.L.1
-
27
-
-
0037992680
-
Evidence for localized bacterial loading as the cause of chronic beach closings in a freshwater marina
-
McLellan, S. L., and A. K. Salmore. 2003. Evidence for localized bacterial loading as the cause of chronic beach closings in a freshwater marina. Water Res. 37:2700-2708.
-
(2003)
Water Res
, vol.37
, pp. 2700-2708
-
-
McLellan, S.L.1
Salmore, A.K.2
-
28
-
-
33845542335
-
Detection of human-derived fecal pollution in environmental waters by use of a PCR-based human polyomavirus assay
-
McQuaig, S. M., T. M. Scott, V. J. Harwood, S. R. Farrah, and J. O. Lukasik. 2006. Detection of human-derived fecal pollution in environmental waters by use of a PCR-based human polyomavirus assay. Appl. Environ. Microbiol. 72:7567-7574.
-
(2006)
Appl. Environ. Microbiol
, vol.72
, pp. 7567-7574
-
-
McQuaig, S.M.1
Scott, T.M.2
Harwood, V.J.3
Farrah, S.R.4
Lukasik, J.O.5
-
29
-
-
34547476651
-
Quo vadis source tracking? Towards a strategic framework for environmental monitoring of fecal pollution
-
Santo Domingo, J. W., D. G. Bambic, T. A. Edge, and S. Wuertz. 2007. Quo vadis source tracking? Towards a strategic framework for environmental monitoring of fecal pollution. Water Res. 41:3539-3552.
-
(2007)
Water Res
, vol.41
, pp. 3539-3552
-
-
Santo Domingo, J.W.1
Bambic, D.G.2
Edge, T.A.3
Wuertz, S.4
-
30
-
-
34250210542
-
Examination of the microbial ecology of the avian intestine in vivo using bromodeoxyuridine
-
Scupham, A. J. 2007. Examination of the microbial ecology of the avian intestine in vivo using bromodeoxyuridine. Environ. Microbiol. 9:1801-1809.
-
(2007)
Environ. Microbiol
, vol.9
, pp. 1801-1809
-
-
Scupham, A.J.1
-
31
-
-
34247634968
-
Identification of bacterial DNA markers for the detection of human fecal pollution in water
-
Shanks, O. C., J. W. Domingo, J. Lu, C. A. Kelty, and J. E. Graham. 2007. Identification of bacterial DNA markers for the detection of human fecal pollution in water. Appl. Environ. Microbiol. 73:2416-2422.
-
(2007)
Appl. Environ. Microbiol
, vol.73
, pp. 2416-2422
-
-
Shanks, O.C.1
Domingo, J.W.2
Lu, J.3
Kelty, C.A.4
Graham, J.E.5
-
32
-
-
33745130390
-
Competitive metagenomic DNA hybridization identifies host-specific microbial genetic markers in cow fecal samples
-
Shanks, O. C., J. W. Santo Domingo, R. Lamendella, C. A. Kelty, and J. E. Graham. 2006. Competitive metagenomic DNA hybridization identifies host-specific microbial genetic markers in cow fecal samples. Appl. Environ. Microbiol. 72:4054-4060.
-
(2006)
Appl. Environ. Microbiol
, vol.72
, pp. 4054-4060
-
-
Shanks, O.C.1
Santo Domingo, J.W.2
Lamendella, R.3
Kelty, C.A.4
Graham, J.E.5
-
33
-
-
33746094667
-
Microsporidian species known to infect humans are present in aquatic birds: Implications for transmission via water?
-
Slodkowicz-Kowalska, A., T. K. Graczyk, L. Tamang, S. Jedrzejewski, A. Nowosad, P. Zduniak, P. Solarczyk, A. S. Girouard, and A. C. Majewska. 2006. Microsporidian species known to infect humans are present in aquatic birds: implications for transmission via water? Appl. Environ. Microbiol. 72:4540-4544.
-
(2006)
Appl. Environ. Microbiol
, vol.72
, pp. 4540-4544
-
-
Slodkowicz-Kowalska, A.1
Graczyk, T.K.2
Tamang, L.3
Jedrzejewski, S.4
Nowosad, A.5
Zduniak, P.6
Solarczyk, P.7
Girouard, A.S.8
Majewska, A.C.9
-
34
-
-
0018681507
-
Effect of waterfowl (Anas platyrhynchos) on indicator bacteria populations in a recreational lake Madison, Wisconsin
-
Standridge, J. H., J. J. Delfino, L. B. Kleppe, and R. Butler. 1979. Effect of waterfowl (Anas platyrhynchos) on indicator bacteria populations in a recreational lake Madison, Wisconsin. Appl. Environ. Microbiol. 38:547-550.
-
(1979)
Appl. Environ. Microbiol
, vol.38
, pp. 547-550
-
-
Standridge, J.H.1
Delfino, J.J.2
Kleppe, L.B.3
Butler, R.4
-
35
-
-
0242417584
-
Prevalence of Campylobacter jejuni, Campylobacter lari, and Campylobacter coli in different ecological guilds and taxa of migrating birds
-
Waldenström, J., T. Broman, I. Carlsson, D. Hasselquist, R. P. Achterberg, J. A. Wagenaar, and B. Olsen. 2002. Prevalence of Campylobacter jejuni, Campylobacter lari, and Campylobacter coli in different ecological guilds and taxa of migrating birds. Appl. Environ. Microbiol. 68:5911-5917.
-
(2002)
Appl. Environ. Microbiol
, vol.68
, pp. 5911-5917
-
-
Waldenström, J.1
Broman, T.2
Carlsson, I.3
Hasselquist, D.4
Achterberg, R.P.5
Wagenaar, J.A.6
Olsen, B.7
-
36
-
-
33846307784
-
Species diversity of campylobacteria in a wild bird community in Sweden
-
Waldenström, J., S. L. On, R. Ottvall, D. Hasselquist, and B. Olsen. 2007. Species diversity of campylobacteria in a wild bird community in Sweden. J. Appl. Microbiol. 102:424-432.
-
(2007)
J. Appl. Microbiol
, vol.102
, pp. 424-432
-
-
Waldenström, J.1
On, S.L.2
Ottvall, R.3
Hasselquist, D.4
Olsen, B.5
-
37
-
-
3242761602
-
Host-adapted Cryptosporidium spp. in Canada geese (Branta canadensis)
-
Zhou, L., H. Kassa, M. L. Tischler, and L. Xiao. 2004. Host-adapted Cryptosporidium spp. in Canada geese (Branta canadensis). Appl. Environ. Microbiol. 70:4211-4215.
-
(2004)
Appl. Environ. Microbiol
, vol.70
, pp. 4211-4215
-
-
Zhou, L.1
Kassa, H.2
Tischler, M.L.3
Xiao, L.4
|