-
1
-
-
34247614065
-
A QTL for rice grain width and weight encodes a previously unknown RING-type E3 ubiquitin ligase
-
Song XJ, Huang W, Shi M, Zhu MZ, Lin HX (2007) A QTL for rice grain width and weight encodes a previously unknown RING-type E3 ubiquitin ligase. Nat Genet 39: 623-630.
-
(2007)
Nat Genet
, vol.39
, pp. 623-630
-
-
Song, X.J.1
Huang, W.2
Shi, M.3
Zhu, M.Z.4
Lin, H.X.5
-
2
-
-
33750853059
-
Expression of artificial microRNAs in transgenic Arabidopsis thaliana confers virus resistance
-
Niu QW, Lin SS, Reyes JL, Chen KC, Wu HW, et al. (2006) Expression of artificial microRNAs in transgenic Arabidopsis thaliana confers virus resistance. Nat Biotechnol 24: 1420-1428.
-
(2006)
Nat Biotechnol
, vol.24
, pp. 1420-1428
-
-
Niu, Q.W.1
Lin, S.S.2
Reyes, J.L.3
Chen, K.C.4
Wu, H.W.5
-
4
-
-
0037129230
-
Green revolution: A mutant gibberellin-synthesis gene in rice
-
Sasaki A, Ashikari M, Ueguchi-Tanaka M, Itoh H, Nishimura A, et al. (2002) Green revolution: a mutant gibberellin-synthesis gene in rice. Nature 416: 701-702.
-
(2002)
Nature
, vol.416
, pp. 701-702
-
-
Sasaki, A.1
Ashikari, M.2
Ueguchi-Tanaka, M.3
Itoh, H.4
Nishimura, A.5
-
5
-
-
0037173012
-
Semidwarf (sd-l), "green revolution" rice, contains a defective gibberellin 20-oxidase gene
-
Spielmeyer W, Ellis MH, Chandler PM (2002) Semidwarf (sd-l), "green revolution" rice, contains a defective gibberellin 20-oxidase gene. Proc Natl Acad Sci USA 99: 9043-9048.
-
(2002)
Proc Natl Acad Sci USA
, vol.99
, pp. 9043-9048
-
-
Spielmeyer, W.1
Ellis, M.H.2
Chandler, P.M.3
-
6
-
-
33947276163
-
Genetic and molecular analysis of utility of sdl alleles in rice breeding
-
Asano K, Takashi T, Miura K, Qian Q, Kitano H, et al. (2007) Genetic and molecular analysis of utility of sdl alleles in rice breeding. Breed Sci 57: 53-58.
-
(2007)
Breed Sci
, vol.57
, pp. 53-58
-
-
Asano, K.1
Takashi, T.2
Miura, K.3
Qian, Q.4
Kitano, H.5
-
7
-
-
33644903254
-
EU11, encoding a putative cytochrome P450 monooxygenase, regulates internode elongation by modulating gibberellin responses in rice
-
Luo A, Qian Q, Yin H, Liu X, Yin C, et al. (2006) EU11, encoding a putative cytochrome P450 monooxygenase, regulates internode elongation by modulating gibberellin responses in rice. Plant Cell Physiol 47: 181-191.
-
(2006)
Plant Cell Physiol
, vol.47
, pp. 181-191
-
-
Luo, A.1
Qian, Q.2
Yin, H.3
Liu, X.4
Yin, C.5
-
8
-
-
33645949148
-
ELONGATED UPPERMOST INTERNODE encodes a cytochrome P450 monooxygenase that epoxidizes gibberellins in a novel deactivation reaction in rice
-
Zhu Y, Nomura T, Xu Y, Zhang Y, Peng Y, et al. (2006) ELONGATED UPPERMOST INTERNODE encodes a cytochrome P450 monooxygenase that epoxidizes gibberellins in a novel deactivation reaction in rice. Plant Cell 18: 442-456.
-
(2006)
Plant Cell
, vol.18
, pp. 442-456
-
-
Zhu, Y.1
Nomura, T.2
Xu, Y.3
Zhang, Y.4
Peng, Y.5
-
9
-
-
46649099459
-
Registration of Guichao 2 eui rice genetic stock
-
Rutger JN (2005) Registration of Guichao 2 eui rice genetic stock. Crop Sci 45: 433.
-
(2005)
Crop Sci
, vol.45
, pp. 433
-
-
Rutger, J.N.1
-
10
-
-
1842815204
-
RNA interference in crop plants
-
Kusaba M (2004) RNA interference in crop plants. Curr Opin Biotechnol 15: 139-143.
-
(2004)
Curr Opin Biotechnol
, vol.15
, pp. 139-143
-
-
Kusaba, M.1
-
11
-
-
34247176129
-
RNAi for revealing and engineering plant gene functions
-
Small I (2007) RNAi for revealing and engineering plant gene functions. Curr Opin Biotechnol 18: 148-153.
-
(2007)
Curr Opin Biotechnol
, vol.18
, pp. 148-153
-
-
Small, I.1
-
12
-
-
34748836500
-
RNAi and microRNA: Breakthrough technologies for the improvement of plant nutritional value and metabolic engineering
-
Tang G, Galili G, Zhuang X (2007) RNAi and microRNA: breakthrough technologies for the improvement of plant nutritional value and metabolic engineering. Metabolomics 3: 357-369.
-
(2007)
Metabolomics
, vol.3
, pp. 357-369
-
-
Tang, G.1
Galili, G.2
Zhuang, X.3
-
13
-
-
34249951149
-
Artificial miRNA-mediated virus resistance in plants
-
Qu J, Ye J, Fang R (2007) Artificial miRNA-mediated virus resistance in plants. J Virol 81: 6690-6699.
-
(2007)
J Virol
, vol.81
, pp. 6690-6699
-
-
Qu, J.1
Ye, J.2
Fang, R.3
-
14
-
-
35948984506
-
Control of coleopteran insect pests through RNA interference
-
Baum JA, Bogaert T, Clinton W, Heck GR, Feldmann P, et al. (2007) Control of coleopteran insect pests through RNA interference. Nat Biotechnol 25: 1322 1326.
-
(2007)
Nat Biotechnol
, vol.25
, pp. 1322-1326
-
-
Baum, J.A.1
Bogaert, T.2
Clinton, W.3
Heck, G.R.4
Feldmann, P.5
-
15
-
-
35948967593
-
Silencing a cotton bollworm P450 moncoxygenase gene by plant-mediated RNAi impairs larval tolerance of gossypol
-
Mao YB, Cai WJ, Wang JW, Hong GJ, Tao XY, et al. (2007) Silencing a cotton bollworm P450 moncoxygenase gene by plant-mediated RNAi impairs larval tolerance of gossypol. Nat Biotechnol 25: 1307-1313.
-
(2007)
Nat Biotechnol
, vol.25
, pp. 1307-1313
-
-
Mao, Y.B.1
Cai, W.J.2
Wang, J.W.3
Hong, G.J.4
Tao, X.Y.5
-
17
-
-
33746556993
-
A brief history of RNAi: The silence of the genes
-
Sen GL, Blau HM (2006) A brief history of RNAi: the silence of the genes. FASEB J 20: 1293-1299.
-
(2006)
FASEB J
, vol.20
, pp. 1293-1299
-
-
Sen, G.L.1
Blau, H.M.2
-
18
-
-
0034800385
-
Construct design for efficient, effective and high-throughput gene silencing in plants
-
Wesley SV, Helliwell CA, Smith NA, Wang MB, Rouse DT, et al. (2001) Construct design for efficient, effective and high-throughput gene silencing in plants. Plant J 27: 581-590.
-
(2001)
Plant J
, vol.27
, pp. 581-590
-
-
Wesley, S.V.1
Helliwell, C.A.2
Smith, N.A.3
Wang, M.B.4
Rouse, D.T.5
-
19
-
-
0034712919
-
Specific and heritable genetic interference by double-stranded RNA in Arabidopsis thaliana
-
Chuang CF, Meyerowitz EM (2000) Specific and heritable genetic interference by double-stranded RNA in Arabidopsis thaliana. Proc Natl Acad Sci USA 97: 4985-4990.
-
(2000)
Proc Natl Acad Sci USA
, vol.97
, pp. 4985-4990
-
-
Chuang, C.F.1
Meyerowitz, E.M.2
-
20
-
-
33750061917
-
Computational estimation and experimental verification of off-target silencing during posttranscriptional gene silencing in plants
-
Xu P, Zhang Y, Kang L, Roossinck MJ, Mysore KS (2006) Computational estimation and experimental verification of off-target silencing during posttranscriptional gene silencing in plants. Plant Physiol 142: 429-440.
-
(2006)
Plant Physiol
, vol.142
, pp. 429-440
-
-
Xu, P.1
Zhang, Y.2
Kang, L.3
Roossinck, M.J.4
Mysore, K.S.5
-
21
-
-
33745393624
-
Highly specific gene silencing by artificial microRNAs in Arabidopsis
-
Schwab R, Ossowski S, Riester M, Warthmann N, Weigel D (2006) Highly specific gene silencing by artificial microRNAs in Arabidopsis. Plant Cell 18: 1121-1133.
-
(2006)
Plant Cell
, vol.18
, pp. 1121-1133
-
-
Schwab, R.1
Ossowski, S.2
Riester, M.3
Warthmann, N.4
Weigel, D.5
-
22
-
-
33646185558
-
Endogenous and synthetic microRNAs stimulate simultaneous, efficient, and localized regulation of multiple targets in diverse species
-
Alvarez JP, Pekker I, Goldshmidt A, Blum E, Amsellem Z, et al. (2006) Endogenous and synthetic microRNAs stimulate simultaneous, efficient, and localized regulation of multiple targets in diverse species. Plant Cell 18: 1134-1151.
-
(2006)
Plant Cell
, vol.18
, pp. 1134-1151
-
-
Alvarez, J.P.1
Pekker, I.2
Goldshmidt, A.3
Blum, E.4
Amsellem, Z.5
-
23
-
-
4444234497
-
In vivo investigation of the transcription, processing, endonucleolytic activity, and functional relevance of the spatial distribution of a plant miRNA
-
Parizotto EA, Dunoyer P, Rahm N, Himber C, Voinnet O (2004) In vivo investigation of the transcription, processing, endonucleolytic activity, and functional relevance of the spatial distribution of a plant miRNA. Genes Dev 18: 2237-2242.
-
(2004)
Genes Dev
, vol.18
, pp. 2237-2242
-
-
Parizotto, E.A.1
Dunoyer, P.2
Rahm, N.3
Himber, C.4
Voinnet, O.5
-
24
-
-
0036294527
-
Both natural and designed micro RNAs can inhibit die expression of cognate mRNAs when expressed in human cells
-
Zeng Y, Wagner EJ, Cullen BR (2002) Both natural and designed micro RNAs can inhibit die expression of cognate mRNAs when expressed in human cells. Mol Cell 9: 1327-1333.
-
(2002)
Mol Cell
, vol.9
, pp. 1327-1333
-
-
Zeng, Y.1
Wagner, E.J.2
Cullen, B.R.3
-
25
-
-
38949151063
-
Gene silencing in plants using artificial microRNAs and other small RNAs
-
Ossowski S, Schwab I, Weigel D (2008) Gene silencing in plants using artificial microRNAs and other small RNAs. Plant J 53: 674-690.
-
(2008)
Plant J
, vol.53
, pp. 674-690
-
-
Ossowski, S.1
Schwab, I.2
Weigel, D.3
-
26
-
-
0037144457
-
Cleavage of Scarecrow-like mRNA targets directed by a class of Arabidopsis miRNA
-
Llave C, Xie Z, Kasschau KD, Carrington JC (2002) Cleavage of Scarecrow-like mRNA targets directed by a class of Arabidopsis miRNA. Science 297: 2053-2056.
-
(2002)
Science
, vol.297
, pp. 2053-2056
-
-
Llave, C.1
Xie, Z.2
Kasschau, K.D.3
Carrington, J.C.4
-
27
-
-
16244398080
-
Specific effects of microRNAs on the plant transcriptome
-
Schwab R, Palatnik JF, Riester M, Schommer C, Schmid M, et al. (2005) Specific effects of microRNAs on the plant transcriptome. Dev Cell 8: 517 527.
-
(2005)
Dev Cell
, vol.8
, pp. 517-527
-
-
Schwab, R.1
Palatnik, J.F.2
Riester, M.3
Schommer, C.4
Schmid, M.5
-
28
-
-
2342577446
-
Simple RNAi vectors for stable and transient suppression of gene function in rice
-
Miki D, Shimamoto K (2004) Simple RNAi vectors for stable and transient suppression of gene function in rice. Plant Cell Physiol 45: 490-495.
-
(2004)
Plant Cell Physiol
, vol.45
, pp. 490-495
-
-
Miki, D.1
Shimamoto, K.2
-
29
-
-
14644422554
-
Spotted leaf11, a negative regulator of plant cell death and defense, encodes a U-box/armadillo repeat protein endowed with E3 ubiquitin ligase activity
-
Zeng LR, Qu S, Bordeos A, Yang C, Baraoidan M, et al. (2004) Spotted leaf11, a negative regulator of plant cell death and defense, encodes a U-box/armadillo repeat protein endowed with E3 ubiquitin ligase activity. Plant Cell 16: 2795-2808.
-
(2004)
Plant Cell
, vol.16
, pp. 2795-2808
-
-
Zeng, L.R.1
Qu, S.2
Bordeos, A.3
Yang, C.4
Baraoidan, M.5
-
31
-
-
34447102459
-
Molecular basis for target RNA recognition and cleavage by human RISC
-
Ameres SL, Martinez J, Schroeder R (2007) Molecular basis for target RNA recognition and cleavage by human RISC. Cell 130: 101-112.
-
(2007)
Cell
, vol.130
, pp. 101-112
-
-
Ameres, S.L.1
Martinez, J.2
Schroeder, R.3
-
32
-
-
34748821761
-
The role of site accessibility in microRNA target recognition
-
Kertesz M, Iovino N, Unnerstall U, Gaul U, Segal E (2007) The role of site accessibility in microRNA target recognition. Nat Genet 39: 1278-1284.
-
(2007)
Nat Genet
, vol.39
, pp. 1278-1284
-
-
Kertesz, M.1
Iovino, N.2
Unnerstall, U.3
Gaul, U.4
Segal, E.5
-
33
-
-
33646877072
-
Thermodynamics of RNA-RNA binding
-
Mückstein U, Tafer H, Hackermüller J, Bernhart SH, Stadler PF, et al. (2006) Thermodynamics of RNA-RNA binding. Bioinformatics 22: 1177-1182.
-
(2006)
Bioinformatics
, vol.22
, pp. 1177-1182
-
-
Mückstein, U.1
Tafer, H.2
Hackermüller, J.3
Bernhart, S.H.4
Stadler, P.F.5
-
34
-
-
33749438388
-
Designing siRNA that distinguish between genes that differ by a single nucleotide
-
Schwarz DS, Ding H, Kennington L, Moore JT, Schelter J, et al. (2006) Designing siRNA that distinguish between genes that differ by a single nucleotide. PLoS Genet 2: e140.
-
(2006)
PLoS Genet
, vol.2
-
-
Schwarz, D.S.1
Ding, H.2
Kennington, L.3
Moore, J.T.4
Schelter, J.5
-
35
-
-
3843065475
-
High throughput T-DNA insertion mutagenesis in rice: A first step towards in silico reverse genetics
-
Sallaud C, Gay C, Larmande P, Bès M, Piffanelli P, et al. (2004) High throughput T-DNA insertion mutagenesis in rice: a first step towards in silico reverse genetics. Plant J 39: 450-464.
-
(2004)
Plant J
, vol.39
, pp. 450-464
-
-
Sallaud, C.1
Gay, C.2
Larmande, P.3
Bès, M.4
Piffanelli, P.5
-
36
-
-
33845618112
-
The molecular genetics of crop domestication
-
Doebley JF, Gaut BS, Smith BD (2006) The molecular genetics of crop domestication. Cell 127: 1309-1321.
-
(2006)
Cell
, vol.127
, pp. 1309-1321
-
-
Doebley, J.F.1
Gaut, B.S.2
Smith, B.D.3
-
37
-
-
0036166154
-
Diverse variation of reproductive barriers in three intraspecific rice crosses
-
Harushima Y, Nakagahra M, Yano M, Sasaki T, Kurata N (2002) Diverse variation of reproductive barriers in three intraspecific rice crosses. Genetics 160: 313-322.
-
(2002)
Genetics
, vol.160
, pp. 313-322
-
-
Harushima, Y.1
Nakagahra, M.2
Yano, M.3
Sasaki, T.4
Kurata, N.5
-
38
-
-
0037252684
-
Rfam: An RNA family database
-
Griffiths-Jones S, Bateman A, Marshall M, Kharma A, Eddy SR (2003) Rfam: an RNA family database. Nucleic Acids Res 31: 439-441.
-
(2003)
Nucleic Acids Res
, vol.31
, pp. 439-441
-
-
Griffiths-Jones, S.1
Bateman, A.2
Marshall, M.3
Kharma, A.4
Eddy, S.R.5
-
39
-
-
3042666256
-
MUSCLE: Multiple sequence alignment with high accuracy and high throughput
-
Edgar RC (2004) MUSCLE: multiple sequence alignment with high accuracy and high throughput. Nucleic Acids Res 32: 1792-1797.
-
(2004)
Nucleic Acids Res
, vol.32
, pp. 1792-1797
-
-
Edgar, R.C.1
-
40
-
-
33846101405
-
The TIGR Rice Genome Annotation Resource: Improvements and new features
-
Ouyang S, Zhu W, Hamilton J, Lin H, Campbell M, et al. (2007) The TIGR Rice Genome Annotation Resource: improvements and new features. Nucleic Acids Res 35: D883-887.
-
(2007)
Nucleic Acids Res
, vol.35
-
-
Ouyang, S.1
Zhu, W.2
Hamilton, J.3
Lin, H.4
Campbell, M.5
-
41
-
-
0034201441
-
EMBOSS: The European Molecular Biology Open Software Suite
-
Rice P, Longden I, Bleasby A (2000) EMBOSS: the European Molecular Biology Open Software Suite. Trends Genet 16: 276-277.
-
(2000)
Trends Genet
, vol.16
, pp. 276-277
-
-
Rice, P.1
Longden, I.2
Bleasby, A.3
-
42
-
-
33644795388
-
Loss of function of OsDCL1 affects microRNA accumulation and causes developmental defects in rice
-
Liu B, Li P, Li X, Liu C, Cao S, et al. (2005) Loss of function of OsDCL1 affects microRNA accumulation and causes developmental defects in rice. Plant Physiol 139: 296-305.
-
(2005)
Plant Physiol
, vol.139
, pp. 296-305
-
-
Liu, B.1
Li, P.2
Li, X.3
Liu, C.4
Cao, S.5
-
43
-
-
34147098535
-
An expression atlas of rice mRNAs and small RNAs
-
Nobuta K, Venu RC, Lu C, Belo A, Vemaraju K, et al. (2007) An expression atlas of rice mRNAs and small RNAs. Nat Biotechnol 25: 473-477.
-
(2007)
Nat Biotechnol
, vol.25
, pp. 473-477
-
-
Nobuta, K.1
Venu, R.C.2
Lu, C.3
Belo, A.4
Vemaraju, K.5
-
44
-
-
33750129017
-
Japonica rice varieties (Oryza sativa, Nipponbare, and others)
-
Hervé P, Kayano T (2006) Japonica rice varieties (Oryza sativa, Nipponbare, and others). Methods Mol Biol 343: 213-222.
-
(2006)
Methods Mol Biol
, vol.343
, pp. 213-222
-
-
Hervé, P.1
Kayano, T.2
-
45
-
-
33744956603
-
Improved protocols for transformation of indica rice mediated by Agrobacterium lumefaciens
-
Hiei Y, Komari T (2006) Improved protocols for transformation of indica rice mediated by Agrobacterium lumefaciens. Plant Cell Tissue Organ Cult 85: 271-283.
-
(2006)
Plant Cell Tissue Organ Cult
, vol.85
, pp. 271-283
-
-
Hiei, Y.1
Komari, T.2
-
46
-
-
17344392308
-
A new mathematical model for relative quantification in real-time RT-PCR
-
Pfaffl MW (2001) A new mathematical model for relative quantification in real-time RT-PCR. Nucleic Acids Res 29: e45.
-
(2001)
Nucleic Acids Res
, vol.29
-
-
Pfaffl, M.W.1
|