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Volumn 43, Issue 38, 2004, Pages 12048-12064

The molecular code for hemoglobin allostery revealed by linking the thermodynamics and kinetics of quaternary structural change. 1. Microstate linear free energy relations

Author keywords

[No Author keywords available]

Indexed keywords

ACTIVATION ENERGY; DATA REDUCTION; FREE ENERGY; PARAMETER ESTIMATION; REACTION KINETICS; THERMODYNAMICS;

EID: 4644320185     PISSN: 00062960     EISSN: None     Source Type: Journal    
DOI: 10.1021/bi049393v     Document Type: Article
Times cited : (19)

References (50)
  • 1
    • 0026569976 scopus 로고
    • Molecular code for cooperativity in hemoglobin
    • Ackers, G. K., Doyle, M. L., Myers, D., and Daugherty, M. A. (1992) Molecular code for cooperativity in hemoglobin, Science 255, 54-63.
    • (1992) Science , vol.255 , pp. 54-63
    • Ackers, G.K.1    Doyle, M.L.2    Myers, D.3    Daugherty, M.A.4
  • 2
    • 78651189765 scopus 로고
    • On the nature of allosteric transitions: A plausible model
    • Monod, J., Wyman, J., and Changeux, J. P. (1965) On the nature of allosteric transitions: a plausible model, J. Mol. Biol. 12, 88-118.
    • (1965) J. Mol. Biol. , vol.12 , pp. 88-118
    • Monod, J.1    Wyman, J.2    Changeux, J.P.3
  • 3
    • 0013863816 scopus 로고
    • Comparison of experimental binding data and theoretical models in proteins containing subunits
    • Koshland, D. E., Nemethy, G., and Filmer, D. (1966) Comparison of experimental binding data and theoretical models in proteins containing subunits, Biochemistry 5, 365-385.
    • (1966) Biochemistry , vol.5 , pp. 365-385
    • Koshland, D.E.1    Nemethy, G.2    Filmer, D.3
  • 4
    • 0037162515 scopus 로고    scopus 로고
    • Single residue modification of only one dimer within the hemoglobin tetramer reveals autonomous dimer function
    • Ackers, G. K., Dalessio, P. J., Lew, G. H., Daugherty, M. A., and Holt, J. M. (2002) Single residue modification of only one dimer within the hemoglobin tetramer reveals autonomous dimer function, Proc. Natl. Acad. Sci. U. S. A. 99, 9777-9782.
    • (2002) Proc. Natl. Acad. Sci. U. S. A. , vol.99 , pp. 9777-9782
    • Ackers, G.K.1    Dalessio, P.J.2    Lew, G.H.3    Daugherty, M.A.4    Holt, J.M.5
  • 5
    • 18844424175 scopus 로고
    • Inertia and driving force of chemical reactions
    • Evans, M. G., and Polyanyi, M. (1938) Inertia and driving force of chemical reactions, Trans. Faraday Soc. 34, 11-24.
    • (1938) Trans. Faraday Soc. , vol.34 , pp. 11-24
    • Evans, M.G.1    Polyanyi, M.2
  • 6
    • 0025897094 scopus 로고
    • Application of linear free energy relations to protein conformational changes: The quaternary structural change of hemoglobin
    • Eaton, W. A., Henry, E. R., and Hofrichter, J. (1991) Application of linear free energy relations to protein conformational changes: the quaternary structural change of hemoglobin, Proc. Natl. Acad. Sci. U. S. A. 88, 4472-4475.
    • (1991) Proc. Natl. Acad. Sci. U. S. A. , vol.88 , pp. 4472-4475
    • Eaton, W.A.1    Henry, E.R.2    Hofrichter, J.3
  • 7
    • 0030907624 scopus 로고    scopus 로고
    • Can a two-state MWC allosteric model explain hemoglobin kinetics?
    • Henry, E. R., Jones, C. M., Hofrichter, J., and Eaton, W. A. (1997) Can a two-state MWC allosteric model explain hemoglobin kinetics? Biochemistry 36, 6511-6528.
    • (1997) Biochemistry , vol.36 , pp. 6511-6528
    • Henry, E.R.1    Jones, C.M.2    Hofrichter, J.3    Eaton, W.A.4
  • 8
    • 0017285945 scopus 로고
    • Quaternary conformational changes in human hemoglobin studied by laser photolysis of carboxyhemoglobin
    • Sawicki, C. A., and Gibson, Q. H. (1976) Quaternary conformational changes in human hemoglobin studied by laser photolysis of carboxyhemoglobin, J. Biol. Chem. 251, 1533-1542.
    • (1976) J. Biol. Chem. , vol.251 , pp. 1533-1542
    • Sawicki, C.A.1    Gibson, Q.H.2
  • 9
    • 0030046907 scopus 로고    scopus 로고
    • Transformation of cooperative free energies between ligation systems of hemoglobin: Resolution of the carbon monoxide binding intermediates
    • Huang, Y., and Ackers, G. K. (1996) Transformation of cooperative free energies between ligation systems of hemoglobin: resolution of the carbon monoxide binding intermediates, Biochemistry 35, 704-718.
    • (1996) Biochemistry , vol.35 , pp. 704-718
    • Huang, Y.1    Ackers, G.K.2
  • 11
    • 0027375485 scopus 로고
    • Nanosecond time-resolved absorption and polarization dichroism spectroscopies
    • Goldbeck, R. A., and Kliger, D. S. (1993) Nanosecond time-resolved absorption and polarization dichroism spectroscopies, Methods Enzymol. 226, 147-177.
    • (1993) Methods Enzymol. , vol.226 , pp. 147-177
    • Goldbeck, R.A.1    Kliger, D.S.2
  • 12
    • 0002664392 scopus 로고
    • Transient effects in the nanosecond laser photolysis of carboxyhemoglobin: "Cage" recombinations and spectral evolution of the protein
    • Alpert, B., El Mohsni, S., Lindqvist, L., and Tfibel, F. (1979) Transient effects in the nanosecond laser photolysis of carboxyhemoglobin: "cage" recombinations and spectral evolution of the protein, Chem. Phys. Lett. 64, 11-16.
    • (1979) Chem. Phys. Lett. , vol.64 , pp. 11-16
    • Alpert, B.1    El Mohsni, S.2    Lindqvist, L.3    Tfibel, F.4
  • 13
    • 37049110290 scopus 로고
    • Ultrafast recombination in nanosecond laser photolysis of carbonylhemoglobin
    • Duddell, D. A., Morris, R. J., and Richards, J. T. (1979) Ultrafast recombination in nanosecond laser photolysis of carbonylhemoglobin, J. Chem. Soc. Chem. Commun. 75-76.
    • (1979) J. Chem. Soc. Chem. Commun. , pp. 75-76
    • Duddell, D.A.1    Morris, R.J.2    Richards, J.T.3
  • 14
    • 0019190726 scopus 로고
    • Transient Raman study of CO-hemoprotein photolysis: Origin of the quantum yield
    • Friedman, J. M., and Lyons, K. B. (1980) Transient Raman study of CO-hemoprotein photolysis: origin of the quantum yield, Nature 284, 570-572.
    • (1980) Nature , vol.284 , pp. 570-572
    • Friedman, J.M.1    Lyons, K.B.2
  • 17
    • 0029899611 scopus 로고    scopus 로고
    • Allosteric intermediates in hemoglobin. 2. Kinetic modeling of HbCO photolysis
    • Goldbeck, R. A., Paquette, S. J., Björling, S. C., and Kliger, D. S. (1996) Allosteric intermediates in hemoglobin. 2. Kinetic modeling of HbCO photolysis, Biochemistry 35, 8628-8639.
    • (1996) Biochemistry , vol.35 , pp. 8628-8639
    • Goldbeck, R.A.1    Paquette, S.J.2    Björling, S.C.3    Kliger, D.S.4
  • 19
    • 0000967751 scopus 로고
    • Hemoglobin R → T structural dynamics from simultaneous monitoring of tyrosine and tryptophan time-resolved UV resonance Raman signals
    • Rodgers, K. R., Su, C., Subramaniam, S., and Spiro, T. G. (1992) Hemoglobin R → T structural dynamics from simultaneous monitoring of tyrosine and tryptophan time-resolved UV resonance Raman signals, J. Am. Chem. Soc. 114, 3697-3709.
    • (1992) J. Am. Chem. Soc. , vol.114 , pp. 3697-3709
    • Rodgers, K.R.1    Su, C.2    Subramaniam, S.3    Spiro, T.G.4
  • 20
    • 0028799067 scopus 로고
    • Hemoglobin allostery: Resonance Raman spectroscopy of kinetic intermediates
    • Jayaraman, V., Rodgers, K. R., Mukerji, I., and Spiro, T. G. (1995) Hemoglobin allostery: resonance Raman spectroscopy of kinetic intermediates, Science 269, 1843-1848.
    • (1995) Science , vol.269 , pp. 1843-1848
    • Jayaraman, V.1    Rodgers, K.R.2    Mukerji, I.3    Spiro, T.G.4
  • 21
    • 0029999815 scopus 로고    scopus 로고
    • Allosteric intermediates in hemoglobin. I. Nanosecond time-resolved circular dichroism spectroscopy
    • Björling, S. C., Goldbeck, R. A., Paquette, S. J., Milder, S. J., and Kliger, D. S. (1996) Allosteric intermediates in hemoglobin. I. Nanosecond time-resolved circular dichroism spectroscopy, Biochemistry 35, 8619-8627.
    • (1996) Biochemistry , vol.35 , pp. 8619-8627
    • Björling, S.C.1    Goldbeck, R.A.2    Paquette, S.J.3    Milder, S.J.4    Kliger, D.S.5
  • 22
    • 0037014715 scopus 로고    scopus 로고
    • Hydrogen bonding to Trp β37 is the first step in a compound pathway for hemoglobin allostery
    • Goldbeck, R. A., Esquerra, R. M., and Kliger, D. S. (2002) Hydrogen bonding to Trp β37 is the first step in a compound pathway for hemoglobin allostery, J. Am. Chem. Soc. 124, 7646-7647.
    • (2002) J. Am. Chem. Soc. , vol.124 , pp. 7646-7647
    • Goldbeck, R.A.1    Esquerra, R.M.2    Kliger, D.S.3
  • 24
    • 0016753485 scopus 로고
    • Allosteric interpretation of hemoglobin properties
    • Shulman, R. G., Hopfield, J. J., and Ogawa, S. (1975) Allosteric interpretation of hemoglobin properties, Quart. Rev. Biophys. 8, 325-420.
    • (1975) Quart. Rev. Biophys. , vol.8 , pp. 325-420
    • Shulman, R.G.1    Hopfield, J.J.2    Ogawa, S.3
  • 26
    • 0023782862 scopus 로고
    • Linkage of organic phosphates to oxygen binding in human hemoglobin at high concentrations
    • Robert, C. H., Fall, L., and Gill, S. J. (1988) Linkage of organic phosphates to oxygen binding in human hemoglobin at high concentrations, Biochemistry 27, 6835-6843.
    • (1988) Biochemistry , vol.27 , pp. 6835-6843
    • Robert, C.H.1    Fall, L.2    Gill, S.J.3
  • 27
    • 0018568413 scopus 로고
    • The linkage between the four-step binding of oxygen and the binding of heterotropic anionic ligands in hemoglobin
    • Imaizumi, K., Imai, K., and Tyuma, I. (1979) The linkage between the four-step binding of oxygen and the binding of heterotropic anionic ligands in hemoglobin, J. Biochem. (Tokyo) 86, 1829-1840.
    • (1979) J. Biochem. (Tokyo) , vol.86 , pp. 1829-1840
    • Imaizumi, K.1    Imai, K.2    Tyuma, I.3
  • 28
    • 0015239931 scopus 로고
    • The binding of carbon monoxide to α and β chains in tetrameric mammalian hemoglobin
    • Gray, R. D., and Gibson, Q. H. (1971) The binding of carbon monoxide to α and β chains in tetrameric mammalian hemoglobin, J. Biol. Chem. 246, 5176-5178.
    • (1971) J. Biol. Chem. , vol.246 , pp. 5176-5178
    • Gray, R.D.1    Gibson, Q.H.2
  • 29
    • 0002208332 scopus 로고
    • Biological and synthetic dioxygen carriers
    • (Bertini, I., Gray, H. B., Lippard, S. J., and Valentine, J. S., Eds.). University Science Books, Mill Valley
    • Jameson, G. B., and Ibers, J. A. (1994) Biological and Synthetic Dioxygen Carriers, in Bioinorganic Chemistry (Bertini, I., Gray, H. B., Lippard, S. J., and Valentine, J. S., Eds.) pp 167-252. University Science Books, Mill Valley.
    • (1994) Bioinorganic Chemistry , pp. 167-252
    • Jameson, G.B.1    Ibers, J.A.2
  • 30
    • 0024281313 scopus 로고
    • T-state hemoglobin with four ligands bound
    • Marden, M. C., Kister, J., Bohn, B., and Poyart, C. (1988) T-state hemoglobin with four ligands bound, Biochemistry 27, 1659-1664.
    • (1988) Biochemistry , vol.27 , pp. 1659-1664
    • Marden, M.C.1    Kister, J.2    Bohn, B.3    Poyart, C.4
  • 32
    • 0037054844 scopus 로고    scopus 로고
    • Heterotropic effectors control the hemoglobin function by interacting with its T and R state: A new view on the principle of allostery
    • Tsuneshige, A., Park, S., and Yonetani, T. (2002) Heterotropic effectors control the hemoglobin function by interacting with its T and R state: a new view on the principle of allostery, Biophys. Chem. 98, 49-63.
    • (2002) Biophys. Chem. , vol.98 , pp. 49-63
    • Tsuneshige, A.1    Park, S.2    Yonetani, T.3
  • 33
    • 1942502768 scopus 로고    scopus 로고
    • Domain-specific effector interactions within the central cavity of human adult hemoglobin in solution and in porous sol-gel matrices: Evidence for long-range communication pathways
    • Peterson, E. S., Shinder, R., Khan, I., Juczszak, L., Wang, J., Manjula, B., Acharya, S. A., Bonaventura, C., and Friedman, J. M. (2004) Domain-specific effector interactions within the central cavity of human adult hemoglobin in solution and in porous sol-gel matrices: Evidence for long-range communication pathways, Biochemistry 43, 4832-4843.
    • (2004) Biochemistry , vol.43 , pp. 4832-4843
    • Peterson, E.S.1    Shinder, R.2    Khan, I.3    Juczszak, L.4    Wang, J.5    Manjula, B.6    Acharya, S.A.7    Bonaventura, C.8    Friedman, J.M.9
  • 35
    • 0012233998 scopus 로고
    • Kinetics of hemoglobin and transition state theory
    • Szabo, A. (1978) Kinetics of hemoglobin and transition state theory, Proc. Natl. Acad. Sci. U. S. A. 75, 2108-2111.
    • (1978) Proc. Natl. Acad. Sci. U. S. A. , vol.75 , pp. 2108-2111
    • Szabo, A.1
  • 36
    • 0021766170 scopus 로고
    • Linear free-energy relationships in binding of oxygen and carbon monoxide with heme model compounds and heme proteins
    • Lavalette, D., Tetreau, C., Mispelter, J., Momenteau, M., and Lhoste, J.-M. (1984) Linear free-energy relationships in binding of oxygen and carbon monoxide with heme model compounds and heme proteins, Eur. J. Biochem. 145, 555-565.
    • (1984) Eur. J. Biochem. , vol.145 , pp. 555-565
    • Lavalette, D.1    Tetreau, C.2    Mispelter, J.3    Momenteau, M.4    Lhoste, J.-M.5
  • 38
    • 0034753552 scopus 로고    scopus 로고
    • The effect of water on the rate of conformational change in protein allostery
    • Goldbeck, R. A., Paquette, S. J., and Kliger, D. S. (2001) The effect of water on the rate of conformational change in protein allostery, Biophys. J. 81, 2919-2934.
    • (2001) Biophys. J. , vol.81 , pp. 2919-2934
    • Goldbeck, R.A.1    Paquette, S.J.2    Kliger, D.S.3
  • 39
    • 0004247952 scopus 로고
    • The two-state model of hemoglobin: Hb Kansas as a model for the low-affinity state
    • (Ho, C., Ed.), Elsevier, New York
    • Shulman, R. G., Ogawa, S., and Mayer, A. (1982) The Two-State Model of Hemoglobin: Hb Kansas as a Model for the Low-Affinity State, in Hemoglobin and Oxygen Binding (Ho, C., Ed.) pp 205-209, Elsevier, New York.
    • (1982) Hemoglobin and Oxygen Binding , pp. 205-209
    • Shulman, R.G.1    Ogawa, S.2    Mayer, A.3
  • 40
    • 0014958182 scopus 로고
    • Stereochemistry of cooperative effects in haemoglobin
    • Perutz, M. F. (1970) Stereochemistry of cooperative effects in haemoglobin, Nature 228, 726-739.
    • (1970) Nature , vol.228 , pp. 726-739
    • Perutz, M.F.1
  • 42
    • 0010588495 scopus 로고
    • Hemoglobin and myoglobin ligand kinetics
    • Parkhurst, L. J. (1979) Hemoglobin and myoglobin ligand kinetics, Annu. Rev. Phys. Chem. 30, 503-546.
    • (1979) Annu. Rev. Phys. Chem. , vol.30 , pp. 503-546
    • Parkhurst, L.J.1
  • 43
    • 0022256268 scopus 로고
    • Nanosecond optical spectra of iron-cobalt hybrid hemoglobins: Geminate recombination, conformational changes, and intersubunit communication
    • Hofrichter, J., Henry, E. R., Sommer, J. H., Deutsch, R., Ikeda-Saito, M., Yonetani, T., and Eaton, W. A. (1985) Nanosecond optical spectra of iron-cobalt hybrid hemoglobins: geminate recombination, conformational changes, and intersubunit communication, Biochemistry 24, 2667-2679.
    • (1985) Biochemistry , vol.24 , pp. 2667-2679
    • Hofrichter, J.1    Henry, E.R.2    Sommer, J.H.3    Deutsch, R.4    Ikeda-Saito, M.5    Yonetani, T.6    Eaton, W.A.7
  • 45
    • 0025801633 scopus 로고
    • Crystals of haemoglobin with the T quaternary structure bind oxygen noncooperatively with no Bohr effect
    • Mozzarelli, A., Rivetti, C., Rossi, G. L., Henry, E. R., and Eaton, W. A. (1991) Crystals of haemoglobin with the T quaternary structure bind oxygen noncooperatively with no Bohr effect, Nature 351, 416-419.
    • (1991) Nature , vol.351 , pp. 416-419
    • Mozzarelli, A.1    Rivetti, C.2    Rossi, G.L.3    Henry, E.R.4    Eaton, W.A.5
  • 48
    • 0037054847 scopus 로고    scopus 로고
    • A tertiary two-state allosteric model for hemoglobin
    • Henry, E. R., Bettati, S., Hofrichter, J., and Eaton, W. A. (2002) A tertiary two-state allosteric model for hemoglobin, Biophys. Chem. 98, 149-164.
    • (2002) Biophys. Chem. , vol.98 , pp. 149-164
    • Henry, E.R.1    Bettati, S.2    Hofrichter, J.3    Eaton, W.A.4
  • 50
    • 0016258287 scopus 로고
    • Influence of globin structure on the state of the heme. I. Human deoxyhemoglobin
    • Perutz, M. F., Ladner, J. E., Simon, S. R., and Ho, C. (1974) Influence of globin structure on the state of the heme. I. Human deoxyhemoglobin, Biochemistry 13, 2163-2172.
    • (1974) Biochemistry , vol.13 , pp. 2163-2172
    • Perutz, M.F.1    Ladner, J.E.2    Simon, S.R.3    Ho, C.4


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