Functional and spectroscopic characterization of half-liganded iron - Zinc hybrid hemoglobin: Evidence for conformational plasticity within the T state

Biochemistry

Volumn 42, Issue 27, 2003, Pages 8272-8288

  Samuni, Uri ^a   Juszczak, Laura ^a   Dantsker, David ^a   Khan, Imran ^a   Friedman, Adam J ^a   Pérez González de Apodaca, José ^a   Bruno, Stefano ^b   Hui, Hilda L ^c   Colby, Judith E ^c   Karasik, Ellen ^c   Kwiatkowski, Laura D ^c   Mozzarelli, Andrea ^b   Noble, Robert ^c   Friedman, Joel M ^a  

^a ALBERT EINSTEIN COLLEGE OF MEDICINE   (United States)

^b UNIVERSITY OF PARMA   (Italy)

^c UNIVERSITY AT BUFFALO   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

INTERFACES (MATERIALS); PLASTICITY; RAMAN SPECTROSCOPY; SOL-GELS;

LIGANDS;

IRON COMPOUNDS;

HEMOGLOBIN; IRON; LIGAND; ZINC;

ALLOSTERISM; ARTICLE; CONTROLLED STUDY; CRYSTAL; DISSOCIATION; ENCAPSULATION; HEMOGLOBIN SYNTHESIS; HUMAN; OXYGEN AFFINITY; PRIORITY JOURNAL; PROTEIN QUATERNARY STRUCTURE; RAMAN SPECTROMETRY; SPECTROSCOPY;

HEMOGLOBINS; HUMANS; IRON; LIGANDS; PROTEIN CONFORMATION; SPECTRUM ANALYSIS, RAMAN; ZINC;

EID: 0038503269     PISSN: 00062960     EISSN: None     Source Type: Journal    
DOI: 10.1021/bi020648j     Document Type: Article

References (94)

1. Perutz, M. F., Wilkinson, A. J., Paoli, M., and Dodson, G. G. (1998) Annu. Rev. Biophys. Biomol. Struct. 27, 1-34.
2. Mueser, T. C., Rogers, P. H., and Arnone, A. (2000) Biochemistry 39, 15353-15364.
3. Unzai, S., Hori, H., Miyazaki, G., Shibayama, N., and Morimoto, H. (1996) J. Biol. Chem. 271, 12451-12456.
4. Blough, N. V., and Hoffman, B. M. (1984) Biochemistry 23, 2875-2882.
5. Shibayama, N., Imai, K., Morimoto, H., and Saigo, S. (1995) Biochemistry 34, 4773-4780.
6. Chavez, M. D., Courtney, S. H., Chance, M. R., Kiula, D., Nocek, J., Hoffman, B. M., Friedman, J. M., and Ondrias, M. R. (1990) Biochemistry 29, 4844-4852.
7. Bruno, S., Bettati, S., Manfredini, M., Mozzarelli, A., Bolognesi, M., Deriu, D., Rosano, C., Tsuneshige, A., Yonetani, T., and Henry, E. R. (2000) Protein Sci. 9, 683-692.
8. Miyazaki, G., Morimoto, H., Yun, K. M., Park, S. Y., Nakagawa, A., Minagawa, H., and Shibayama, N. (1999) J. Mol. Biol. 292, 1121-1136.
9. Shibayama, N., Yonetani, T., Regan, R. M., and Gibson, Q. H. (1995) Biochemistry, 34, 14658-14667.
10. Sudhakar, K., Laberge, M., Tsuneshige, A., and Vanderkooi, J. M. (1998) Biochemistry 37, 7177-7184.
11. Friedman, J. M., Scott, T. W., Stepnoski, R. A., Ikeda-Saito, M., and Yonetani, T. (1983) J. Biol. Chem. 258, 10564-10572.
12. Hofrichter, J., Henry, E. R., Sommer, J. H., Deutsch, R., Ikeda-Saito, M., Yonetani, T., and Eaton, W. A. (1985) Biochemistry 24, 2667-2679.
13. Ondrias, M. R., Rousseau, D. L., Kitagawa, T., Ikeda-Saito, M., Inubushi, T., and Yonetani, T. (1982) J. Biol. Chem. 257, 8766-8770.
14. Fujii, M., Hori, H., Miyazaki, G., Morimoto, H., and Yonetani, T. (1993) J. Biol. Chem. 268, 15386-15393.
15. Shibayama, N., and Saigo, S. (1995) J. Mol. Biol. 251, 203-209.
16. Bettati, S., and Mozzarelli, A. (1997) J. Biol. Chem. 272, 32050-32055.
17. Das, T. K., Khan, I., Rousseau, D. L., and Friedman, J. M. (1999) Biospectroscopy 5(S), 54-70.
18. Juszczak, L. J., and Friedman, J. M. (1999) J. Biol. Chem. 274, 30357-30360.
19. Khan, I., Shannon, C. F., Dantsker, D., Friedman, A. J., Perez-Gonzalez-de-Apodaca, J., and Friedman, J. M. (2000) Biochemistry 39, 16099-16109.
20. Samuni, U., Dantsker, D., Khan, I., Friedman, A. J., Peterson, E., and Friedman, J. M. (2002) J. Biol. Chem. 25, 25.
21. Amone, A., and Perutz, M. F. (1974) Nature 249, 34-36.
22. Wireko, F. C., Kellogg, G. E., and Abraham, D. J. (1991) J. Med. Chem. 34, 758-767.
23. Perutz, M. F., and Poyart, C. (1983) Lancet 2, 881-882.
24. Lalezari, I., Lalezari, P., Poyart, C., Marden, M., Kister, J., Bohn, B., Fermi, G., and Perutz, M. F. (1990) Biochemistry 29, 1515-1523.
25. Rossi-Fanelli, A., Antonini, E., and Caputo, A. (1958) Biochim. Biophys. Acta 30, 608.
26. Hui, H. L., Kavanaugh, J. S., Doyle, M. L., Wierzba, A., Rogers, P. H., Amone, A., Holt, J. M., Ackers, G. K., and Noble, R. W. (1999) Biochemistry 38, 1040-1049.
27. Clegg, J. B., Naughton, M. A., and Weatherall, D. J. (1965) Nature 207, 945-947.
28. Clegg, J. B., Naughton, M. A., and Weatherball, D. J. (1966) J. Mol. Biol. 19, 91-108.
29. Noble, R. W., Hui, H. L., Kwiatkowski, L. D., Paily, P., DeYoung, A., Wierzba, A., Colby, J. E., Bruno, S., and Mozzarelli, A. (2001) Biochemistry 40, 12357-12368.
30. Gibson, Q. H. (1959) Biochem. J. 91, 161-170.
31. Doyle, M. L., Lew, G., De Young, A., Kwiatkowski, L., Wierzba, A., Noble, R. W., and Ackers, G. K. (1992) Biochemistry 31, 8629-8639.
32. Allen, D. W., Guthe, K. F., and Wyman, J. (1950) J. Biol. Chem. 187, 393-410.
33. Nagel, R. L., Wittenberg, J. B., and Ranney, H. M. (1965) Biochim. Biophys. Acta 100, 286-289.
34. Hayashi, A., Suzuki, T., and Shin, M. (1973) Biochim. Biophys. Acta 310, 309-316.
35. Rivetti, C., Mozzarelli, A., Rossi, G. L., Kwiatkowski, L. D., Wierzba, A. M., and Noble, R. W. (1993) Biochemistry 32, 6411-6418.
36. Bettati, S., Kwiatkowski, L. D., Kavanaugh, J. S., Mozzarelli, A., Amone, A., Rossi, G. L., and Noble, R. W. (1997) J. Biol. Chem. 272, 33077-33084.
37. Dvorak, J. A., and Stotler, W. F. (1971) Exp. Cell Res. 68, 144-148.
38. Rivetti, C., Mozzarelli, A., Rossi, G. L., Henry, E. R., and Eaton, W. A. (1993) Biochemistry 32, 2888-2906.
39. Ellerby, L. M., Nishida, C. R., Nishida, F., Yamanaka, S. A., Dunn, B., Valentine, J. S., and Zink, J. I. (1992) Science 255, 1113-1115.
40. Abbruzetti, S., Viappiani, C., Bruno, S., Bettati, S., Bonaccio., M., and Mozzarelli, A. (2001) J. Nanosci. Nanotechnol. 1, 407-413.
41. Bruno, S., Bonaccio, M., Bettati, S., Rivetti, C., Viappiani, C., Abbruzzetti, S., and Mozzarelli, A. (2001) Protein Sci. 10, 2401-2407.
42. Dantsker, D., Samuni, U., Friedman, A. J., Yang, M., Ray, A., and Friedman, J. M. (2002) J. Mol. Biol. 13, 239-251.
43. Austin, R. H., Beeson, K. W., Eisenstein, L., Frauenfelder, H., and Gunsalus, I. C. (1975) Biochemistry 14, 5355-5373.
44. Doster, W., Kleinert, T., Post, F., and Settles, M. (1993) in Protein - Solvent Interactions (Gregory, R. B., Ed.) Marcel Dekker, New York.
45. Samuni, U., Navati, M. S., Juszczak, L. J., Dantsker, D., Yang, M., and Friedman, J. M. (2000) J. Phys. Chem. B 104, 10802-10813.
46. Alpert, B., El Mohsni, S., Lindqvist, L., and Tfibel, F. (1979) Chem. Phys. Lett. 64, 11-16.
47. Duddell, D., Morris, R., and Richards, J. (1979) J. Chem. Soc., Chem. Commun. 2, 75-76.
48. Friedman, J. M., and Lyons, K. B. (1980) Nature 284, 570-572.
49. Antonini, E., and Brunori, M. (1971) Hemoglobins and Myoglobins in their Reactions with Ligands, American Elsevier Co., New York.
50. Abbruzetti, S., Viappiani, C., Bruno, S., and Mozzarelli, A. (2001) Chem. Phys. Lett. 346, 430-436.
51. Friedman, J. M., Rousseau, D. L., Ondrias, M. R., and Stepnoski, R. A. (1982) Science 218, 1244-1246.
52. Friedman, J. M. (1985) Science 228, 1273-1280.
53. Findsen, E. W., Friedman, J. M., Ondrias, M. R., and Simon, S. R. (1985) Science 229, 661-665.
54. Friedman, J. M. (1994) Methods Enzymol. 232, 205-231.
55. Rousseau, D. L., and Friedman, J. M. (1988) in Biological Applications of Raman Spectroscopy (Spiro, T. G., Ed.) pp 133-215, John Wiley & Sons, New York.
56. Kitagawa, T. (1988) in Biological Application of Raman Spectroscopy (Spiro, T. G., Ed.) pp 97-131, John Wiley & Sons, New York.
57. Huang, J., Juszczak, L. J., Peterson, E. S., Shannon, C. F., Yang, M., Huang, S., Vidugiris, G. V., and Friedman, J. M. (1999) Biochemistry 38, 4514-4525.
58. Hu, X., Rodgers, K. R., Mukerji, I., and Spiro, T. G. (1999) Biochemistry 38, 3462-3467.
59. Peterson, E. S., and Friedman, J. M. (1998) Biochemistry 37, 4346-4357.
60. Khan, I., Dantsker, D., Samuni, U., Friedman, A. J., Bonaventura, C., Manjula, B., Acharya, S. A., and Friedman, J. M. (2001) Biochemistry 40, 7581-7592.
61. Friedman, J. M., Scott, T. W., Fisanick, G. J., Simon, S. R., Findsen, E. W., Ondrias, M. R., and Macdonald, V. W. (1985) Science 229, 187-190.
62. Scott, T. W., and Friedman, J. M. (1984) J. Am. Chem. Soc. 106, 5677-5687.
63. Shibayama, N. (1999) J. Mol. Biol. 285, 1383-1388.
64. Podstawka, E., Rajani, C., Kincaid, J. R., and Proniewicz, L. M. (2000) Biopolymers 57, 201-207.
65. Zhao, X., Chen, R., Raj, V., and Spiro, T. G. (2001) Biopolymers 62, 158-162.
66. Su, C., Park, Y. D., Liu, G., and Spiro, T. G. (1989) J. Am. Chem. Soc. 111, 3457-3459.
67. Rodgers, K., Su, S., Subramaniam, S., and Spiro, T. (1992) J. Am. Chem. Soc. 114, 3697-3709.
68. Nagai, M., Kaminaka, S., Ohba, Y., Nagai, Y., Mizutani, Y., and Kitagawa, T. (1995) J. Biol. Chem. 270, 1636-1642.
69. Huang, S., Peterson, E. S., Ho, C., and Friedman, J. M. (1997) Biochemistry 36, 6197-6206.
70. Nagai, M., Wajcman, H., Lahary, A., Nakatsukasa, T., Nagatomo, S., and Kitagawa, T. (1999) Biochemistry 38, 1243-1251.
71. Wang, D., Zhao, X., and Spiro, T. G. (2000) J. Phys. Chem. 104, 4149-4152.
72. Rodgers, K. R., and Spiro, T. G. (1994) Science 265, 1697-1699.
73. Mukerji, I., and Spiro, T. G. (1994) Biochemistry 33, 13132-13139.
74. Jayaraman, V., and Spiro, T. G. (1995) Biochemistry 34, 4511-4515.
75. Wang, D., and Spiro, T. G. (1998) Biochemistry 37, 9940-9951.
76. Wang, D., Zhao, X., Shen, T.-J., Ho, C., and Spiro, T. (1999) J. Am. Chem. Soc. 121, 11197-11203.
77. Dick, L. A., Heibel, G., Moore, E. G., and Spiro, T. G. (1999) Biochemistry 38, 6406-6410.
78. Juszczak, L. J., Manjula, B., Bonaventura, C., Acharya, S. A., and Friedman, J. M. (2002) Biochemistry 41, 376-385.
79. Jayaraman, V., Rodgers, K. R., Mukerji, I., and Spiro, T. G. (1995) Science 269, 1843-1848.
80. Blough, N. V., Zemel, H., and Hoffman, B. M. (1984) Biochemistry 23, 2883-2891.
81. Mozzarelli, A., Rivetti, C., Rossi, G. L., Eaton, W. A., and Henry, E. R. (1997) Protein Sci. 6, 484-489.
82. Bettati, S., Mozzarelli, A., Rossi, G. L., Tsuneshige, A., Yonetani, T., Eaton, W. A., and Henry, E. R. (1996) Proteins 25, 425-437.
83. Paoli, M., Liddington, R., Tame, J., Wilkinson, A., and Dodson, G. (1996) J. Mol. Biol. 256, 775-792.
84. Imai, K. (1982) Allosteric effects in hemoglobin, Cambridge University Press, Cambridge, England.
85. Shibayama, N., Morimoto, H., and Kitagawa, T. (1986) J. Mol. Biol. 192, 331-336.
86. Monod, J., Wyman, J., and Changeux, J. P. (1965) J. Mol. Biol. 12, 88-118.
87. Ackers, G. K. (1998) Adv. Protein Chem. 51, 185-253.
88. Ackers, G. K., Holt, J. M., Huang, Y., Grinkova, Y., Klinger, A. L., and Denisov, I. (2000) Proteins (Suppl.), 23-43.
89. Friedman, J. M., Scott, T. W., Stepnoski, R. A., Ikeda-Saito, M., and Yonetani, T. (1983) J. Biol. Chem. 258, 10564-10572.
90. Shibayama, N., and Saigo, S. (2001) FEBS Lett. 492, 50-53.
91. Yonetani, T., Park, S., Tsuneshige, A., Imai, K., and Kanaori, K. (2002) J. Biol. Chem. 37, 34508-34520.
92. Miyazaki, G., Morimoto, H., Yun, K. M., Park, S. Y., Nakagawa, A., Minagawa, H., and Shibayama, N. (1999) J. Mol. Biol. 292, 1121-1136.
93. Ikeda-Saito, M., and Verzili, D. (1981) J. Mol. Biol. 153, 441-449.
94. Scott, T. W., Friedman, J. M., Ikeda-Saito, M., and Yonetani, T. (1983) FEBS Lett. 158, 68-72.