-
2
-
-
34249721400
-
Constructing the landscape of the mammalian transcriptome
-
Carninci P. (2007). Constructing the landscape of the mammalian transcriptome. J. Exp. Biol. 210:1497-1506.
-
(2007)
J. Exp. Biol
, vol.210
, pp. 1497-1506
-
-
Carninci, P.1
-
4
-
-
34848828540
-
Small RNAs: Regulators and guardians of the genome
-
Chu C.Y., and Rana T.M. (2007). Small RNAs: regulators and guardians of the genome. J. Cell Physiol. 213:412-419.
-
(2007)
J. Cell Physiol
, vol.213
, pp. 412-419
-
-
Chu, C.Y.1
Rana, T.M.2
-
5
-
-
1642374097
-
Specificity of microRNA target selection in translational repression
-
Doench J.G., and Sharp P.A. (2004). Specificity of microRNA target selection in translational repression. Genes Dev. 18:504-511.
-
(2004)
Genes Dev
, vol.18
, pp. 504-511
-
-
Doench, J.G.1
Sharp, P.A.2
-
6
-
-
33846320398
-
Transcriptional downregulation of sterol metabolism genes in murine liver exposed to acute hypobaric hypoxia
-
Dolt K.S., Karar J., Mishra M.K., Salim J., Kumar R., Grover S.K., and Qadar Pasha M.A. (2007). Transcriptional downregulation of sterol metabolism genes in murine liver exposed to acute hypobaric hypoxia. Biochem. Biophys. Res. Commun. 354:148-153.
-
(2007)
Biochem. Biophys. Res. Commun
, vol.354
, pp. 148-153
-
-
Dolt, K.S.1
Karar, J.2
Mishra, M.K.3
Salim, J.4
Kumar, R.5
Grover, S.K.6
Qadar Pasha, M.A.7
-
8
-
-
34250305146
-
Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project
-
Encode Consortium
-
Encode Consortium (2007). Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project. Nature. 447:799-816.
-
(2007)
Nature
, vol.447
, pp. 799-816
-
-
-
9
-
-
22144492269
-
The biological limitations of transcriptomics in elucidating stress and stress responses
-
Feder M.E., and Walser J.C. (2005). The biological limitations of transcriptomics in elucidating stress and stress responses. J. Evol. Biol. 18:901-910.
-
(2005)
J. Evol. Biol
, vol.18
, pp. 901-910
-
-
Feder, M.E.1
Walser, J.C.2
-
10
-
-
33644524042
-
Hypoxia-inducible myoglobin expression in nonmuscle tissues
-
Fraser J., de Mello L.V., Ward D., Rees H.H., Williams D.R., Fang Y., Brass A., Gracey A.Y., and Cossins A.R. (2006). Hypoxia-inducible myoglobin expression in nonmuscle tissues. Proc. Natl. Acad. Sci. U S A 103:2977-2981.
-
(2006)
Proc. Natl. Acad. Sci. U S A
, vol.103
, pp. 2977-2981
-
-
Fraser, J.1
de Mello, L.V.2
Ward, D.3
Rees, H.H.4
Williams, D.R.5
Fang, Y.6
Brass, A.7
Gracey, A.Y.8
Cossins, A.R.9
-
11
-
-
35348845370
-
Gene expression patterns in the hypoxic murine placenta: A role in epigenesis? Reprod
-
Gheorghe C.P., Mohan S., Oberg K.C., and Longo L.D. (2007). Gene expression patterns in the hypoxic murine placenta: a role in epigenesis? Reprod. Sci. 14:223-233.
-
(2007)
Sci
, vol.14
, pp. 223-233
-
-
Gheorghe, C.P.1
Mohan, S.2
Oberg, K.C.3
Longo, L.D.4
-
12
-
-
34250308428
-
Origin of phenotypes: Genes and transcripts
-
Gingeras T.R. (2007). Origin of phenotypes: genes and transcripts. Genome Res. 17:682-690.
-
(2007)
Genome Res
, vol.17
, pp. 682-690
-
-
Gingeras, T.R.1
-
13
-
-
34249686485
-
Interpreting physiological responses to environmental change through gene expression profiling
-
Gracey A.Y. (2007). Interpreting physiological responses to environmental change through gene expression profiling. J. Exp. Biol. 210:1584-1592.
-
(2007)
J. Exp. Biol
, vol.210
, pp. 1584-1592
-
-
Gracey, A.Y.1
-
14
-
-
4444308856
-
5′-end SAGE for the analysis of transcriptional start sites
-
Hashimoto S., Suzuki Y., Kasai Y., Morohoshi K., Yamada T., Sese J., Morishita S., Sugano S., and Matsushima K. (2004). 5′-end SAGE for the analysis of transcriptional start sites. Nat. Biotechnol. 22:1146-1149.
-
(2004)
Nat. Biotechnol
, vol.22
, pp. 1146-1149
-
-
Hashimoto, S.1
Suzuki, Y.2
Kasai, Y.3
Morohoshi, K.4
Yamada, T.5
Sese, J.6
Morishita, S.7
Sugano, S.8
Matsushima, K.9
-
15
-
-
17644401005
-
SREBP pathway responds to sterols and functions as an oxygen sensor in fission yeast
-
Hughes A.L., Todd B.L., and Espenshade P.J. (2005). SREBP pathway responds to sterols and functions as an oxygen sensor in fission yeast. Cell 120:831-842.
-
(2005)
Cell
, vol.120
, pp. 831-842
-
-
Hughes, A.L.1
Todd, B.L.2
Espenshade, P.J.3
-
16
-
-
7244245762
-
Finishing the euchromatic sequence of the human genome
-
International Human Genome Sequencing Consortium
-
International Human Genome Sequencing Consortium. (2004). Finishing the euchromatic sequence of the human genome. Nature. 431:931-945.
-
(2004)
Nature
, vol.431
, pp. 931-945
-
-
-
17
-
-
34250160256
-
RNA maps reveal new RNA classes and a possible function for pervasive transcription
-
Kapranov P., Cheng J., Dike S., Nix D.A., Duttagupta R., Willingham A.T., Stadler P.F., Hertel J., Hackermuller J., Hofacker I.L., et al. (2007). RNA maps reveal new RNA classes and a possible function for pervasive transcription. Science. 316:1484-1488.
-
(2007)
Science
, vol.316
, pp. 1484-1488
-
-
Kapranov, P.1
Cheng, J.2
Dike, S.3
Nix, D.A.4
Duttagupta, R.5
Willingham, A.T.6
Stadler, P.F.7
Hertel, J.8
Hackermuller, J.9
Hofacker, I.L.10
-
18
-
-
24644472515
-
Antisense transcription in the mammalian transcriptome
-
Katayama S., Tomaru Y., Kasukawa T., Waki K., Nakanishi M., Nakamura M., Nishida H., Yap C.C., Suzuki M., Kawai J., et al. (2005). Antisense transcription in the mammalian transcriptome. Science. 309:1564-1566.
-
(2005)
Science
, vol.309
, pp. 1564-1566
-
-
Katayama, S.1
Tomaru, Y.2
Kasukawa, T.3
Waki, K.4
Nakanishi, M.5
Nakamura, M.6
Nishida, H.7
Yap, C.C.8
Suzuki, M.9
Kawai, J.10
-
19
-
-
33847234988
-
A microRNA signature of hypoxia
-
Kulshreshtha R., Ferracin M., Wojcik S.E., Garzon R., Alder H., Agosto-Perez F.J., Davuluri R., Liu C.G., Croce C.M., Negrini M., et al. (2007). A microRNA signature of hypoxia. Mol. Cell. Biol. 27:1859-1867.
-
(2007)
Mol. Cell. Biol
, vol.27
, pp. 1859-1867
-
-
Kulshreshtha, R.1
Ferracin, M.2
Wojcik, S.E.3
Garzon, R.4
Alder, H.5
Agosto-Perez, F.J.6
Davuluri, R.7
Liu, C.G.8
Croce, C.M.9
Negrini, M.10
-
20
-
-
26444539058
-
Expression profiling of laser-microdissected intrapulmonary arteries in hypoxia-induced pulmonary hypertension
-
Kwapiszewska G., Wilhelm J., Wolff S., Laumanns I., Koenig I.R., Ziegler A., Seeger W., Bohle R.M., Weissmann N., and Fink L. (2005). Expression profiling of laser-microdissected intrapulmonary arteries in hypoxia-induced pulmonary hypertension. Respir. Res. 6:109-125.
-
(2005)
Respir. Res
, vol.6
, pp. 109-125
-
-
Kwapiszewska, G.1
Wilhelm, J.2
Wolff, S.3
Laumanns, I.4
Koenig, I.R.5
Ziegler, A.6
Seeger, W.7
Bohle, R.M.8
Weissmann, N.9
Fink, L.10
-
21
-
-
36849026128
-
Applications of RNA interference in mammalian systems
-
Martin S.E., and Caplen N.J. (2007). Applications of RNA interference in mammalian systems. Annu. Rev. Genomics Hum. Genet. 8:81-108
-
(2007)
Annu. Rev. Genomics Hum. Genet
, vol.8
, pp. 81-108
-
-
Martin, S.E.1
Caplen, N.J.2
-
22
-
-
10644247621
-
Applications of DNA tiling arrays for whole-genome analysis
-
Mockler T.C., Chan S., Sundaresan A., Chen H., Jacobsen S.E., and Ecker J.R. (2005). Applications of DNA tiling arrays for whole-genome analysis. Genomics. 85:1-15.
-
(2005)
Genomics
, vol.85
, pp. 1-15
-
-
Mockler, T.C.1
Chan, S.2
Sundaresan, A.3
Chen, H.4
Jacobsen, S.E.5
Ecker, J.R.6
-
23
-
-
33745220278
-
Single-cell proteomic analysis of S. cerevisiae reveals the architecture of biological noise
-
Newman J.R., Ghaemmaghami S., Ihmels J., Breslow D.K., Noble M., DeRisi J.L., and Weissman J.S. (2006). Single-cell proteomic analysis of S. cerevisiae reveals the architecture of biological noise. Nature. 441:840-846.
-
(2006)
Nature
, vol.441
, pp. 840-846
-
-
Newman, J.R.1
Ghaemmaghami, S.2
Ihmels, J.3
Breslow, D.K.4
Noble, M.5
DeRisi, J.L.6
Weissman, J.S.7
-
24
-
-
33745954345
-
Comparative SAGE analysis of the response to hypoxia in human pulmonary and aortic endothelial cells
-
Peters D.G., Ning W., Chu T.J., Li C.J. and Choi A.M. (2007). Comparative SAGE analysis of the response to hypoxia in human pulmonary and aortic endothelial cells. Physiol. Genomics 26(2):99-108.
-
(2007)
Physiol. Genomics
, vol.26
, Issue.2
, pp. 99-108
-
-
Peters, D.G.1
Ning, W.2
Chu, T.J.3
Li, C.J.4
Choi, A.M.5
-
25
-
-
34548432104
-
Raising the estimate of functional human sequences
-
Pheasant M., and Mattick J.S. (2007). Raising the estimate of functional human sequences. Genome Res. 17(9):1245-1253.
-
(2007)
Genome Res
, vol.17
, Issue.9
, pp. 1245-1253
-
-
Pheasant, M.1
Mattick, J.S.2
-
26
-
-
35348924901
-
Complex interactions between hypoxia inducible factors, insulin-like growth factor-II and oxygen in early murine trophoblasts
-
Pringle K.G., Kind K.L., Thompson J.G., and Roberts C.T. (2007). Complex interactions between hypoxia inducible factors, insulin-like growth factor-II and oxygen in early murine trophoblasts. Placenta. 28(11-12):1147-1157.
-
(2007)
Placenta
, vol.28
, Issue.11-12
, pp. 1147-1157
-
-
Pringle, K.G.1
Kind, K.L.2
Thompson, J.G.3
Roberts, C.T.4
-
27
-
-
0037442493
-
The transcriptional activity of human chromosome 22
-
Rinn J.L., Euskirchen G., Bertone P., Martone R., Luscombe N.M., Hartman S., Harrison P.M., Nelson F.K., Miller P., Gerstein M., et al. (2003). The transcriptional activity of human chromosome 22. Genes Dev. 17:529-540.
-
(2003)
Genes Dev
, vol.17
, pp. 529-540
-
-
Rinn, J.L.1
Euskirchen, G.2
Bertone, P.3
Martone, R.4
Luscombe, N.M.5
Hartman, S.6
Harrison, P.M.7
Nelson, F.K.8
Miller, P.9
Gerstein, M.10
-
28
-
-
9144233601
-
Cap analysis gene expression for high-throughput analysis of transcriptional starting point and identification of promoter usage
-
Shiraki T., Kondo S., Katayama S., Waki K., Kasukawa T., Kawaji H., Kodzius R., Watahiki A., Nakamura M., Arakawa T., et al. (2003). Cap analysis gene expression for high-throughput analysis of transcriptional starting point and identification of promoter usage. Proc. Natl. Acad. Sci. U S A 100;15776-15781.
-
(2003)
Proc. Natl. Acad. Sci. U S A
, vol.100
, pp. 15776-15781
-
-
Shiraki, T.1
Kondo, S.2
Katayama, S.3
Waki, K.4
Kasukawa, T.5
Kawaji, H.6
Kodzius, R.7
Watahiki, A.8
Nakamura, M.9
Arakawa, T.10
-
29
-
-
29444455072
-
A mouse atlas of gene expression: Large-scale digital gene-expression profiles from precisely defined developing C57BL/6J mouse tissues and cells
-
Siddiqui A.S., Khattra J., Delaney A.D., Zhao Y., Astell C., Asano J., Babakaiff R., Barber S., Beland J., Bohacec S., et al. (2005). A mouse atlas of gene expression: large-scale digital gene-expression profiles from precisely defined developing C57BL/6J mouse tissues and cells. Proc. Natl. Acad. Sci. U S A 102:18485-18490.
-
(2005)
Proc. Natl. Acad. Sci. U S A
, vol.102
, pp. 18485-18490
-
-
Siddiqui, A.S.1
Khattra, J.2
Delaney, A.D.3
Zhao, Y.4
Astell, C.5
Asano, J.6
Babakaiff, R.7
Barber, S.8
Beland, J.9
Bohacec, S.10
-
31
-
-
0033585496
-
aHIF: A natural antisense transcript overexpressed in human renal cancer and during hypoxia
-
Thrash-Bingham C.A., and Tartof K.D. (1999). aHIF: a natural antisense transcript overexpressed in human renal cancer and during hypoxia. J. Natl. Cancer Inst. 91:143-151.
-
(1999)
J. Natl. Cancer Inst
, vol.91
, pp. 143-151
-
-
Thrash-Bingham, C.A.1
Tartof, K.D.2
-
32
-
-
20144368638
-
Integrated genomic and proteomic analyses of gene expression in mammalian cells
-
Tian Q., Stepaniants S.B., Mao M., Weng L., Feetham M.C., Doyle M.J., Yi E.C., Dai H., Thorsson V., Eng J., et al. (2004). Integrated genomic and proteomic analyses of gene expression in mammalian cells. Mol. Cell. Proteomics 3:960-969.
-
(2004)
Mol. Cell. Proteomics
, vol.3
, pp. 960-969
-
-
Tian, Q.1
Stepaniants, S.B.2
Mao, M.3
Weng, L.4
Feetham, M.C.5
Doyle, M.J.6
Yi, E.C.7
Dai, H.8
Thorsson, V.9
Eng, J.10
-
33
-
-
10744227931
-
Mammalian overlapping genes: The comparative perspective
-
Veeramachaneni V., Makalowski W., Galdzicki M., Sood R., and Makalowska I. (2004). Mammalian overlapping genes: the comparative perspective. Genome Res. 14:280-286.
-
(2004)
Genome Res
, vol.14
, pp. 280-286
-
-
Veeramachaneni, V.1
Makalowski, W.2
Galdzicki, M.3
Sood, R.4
Makalowska, I.5
|