A mouse atlas of gene expression: Large-scale digital gene-expression profiles from precisely defined developing C57BL/6J mouse tissues and cells

Proceedings of the National Academy of Sciences of the United States of America

Volumn 102, Issue 51, 2005, Pages 18485-18490

  Siddiqui, Asim S ^a   Khattra, Jaswinder ^a   Delaney, Allen D ^a   Zhao, Yongjun ^a   Astell, Caroline ^a   Asano, Jennifer ^a   Babakaiff, Ryan ^a   Barber, Sarah ^a   Beland, Jaclyn ^a   Bohacec, Slavita ^c   Brown John, Mabel ^a   Chand, Steve ^a   Charest, David ^a   Charters, Anita M ^a   Cullum, Rebecca ^b   Dhalla, Noreen ^a   Featherstone, Ruth ^a   Gerhard, Daniela S ^d   Hoffman, Brad ^a   Holt, Robert A ^a   Hou, Juan ^b   Kuo, Byron Y L ^c   Lee, Lisa L C ^a   Lee, Stephanie ^a   Leung, Derek ^a   Ma, Kevin ^a   Matsuo, Corey ^a   Mayo, Michael ^a   McDonald, Helen ^a   Prabhu, Anna Iiisa ^a   Pandoh, Pawan ^a   Riggins, Gregory J ^e   De Algara, Teresa Ruiz ^a   Rupert, James L ^f   Smailus, Duane ^a   Stott, Jeff ^a   Tsai, Miranda ^a   Varhol, Richard ^a   Vrljicak, Pavle ^b   Wong, David ^a   Wu, Mona K ^b   Xie, Yuan Yun ^c   Yang, George ^a   Zhang, Ida ^a   Hirst, Martin ^a   Jones, Steven J M ^a,f   Helgason, Cheryl D ^a   Simpson, Elizabeth M ^c,f   Hoodless, Pamela A ^b,f   Marra, Marco A ^a,f,g   more..

^a BRITISH COLUMBIA CANCER RESEARCH CENTRE   (Canada)

^b BRITISH COLUMBIA CANCER AGENCY   (Canada)

^c CHILDREN S AND WOMEN S HEALTH CENTRE OF BRITISH COLUMBIA   (Canada)

^d NATIONAL CANCER INSTITUTE   (United States)

^e JOHNS HOPKINS UNIVERSITY SCHOOL OF MEDICINE   (United States)

^f UNIVERSITY OF BRITISH COLUMBIA   (Canada)

^g CANADA'S MICHAEL SMITH GENOME SCIENCES CENTRE   (Canada)

Author keywords

Alternative transcripts; Development; Serial analysis of gene expression

Indexed keywords

ANIMAL CELL; ANIMAL TISSUE; ARTICLE; CELL MATURATION; CONTROLLED STUDY; DEVELOPMENT; EMBRYO; GENE EXPRESSION; GENE IDENTIFICATION; GENE LIBRARY; GENE LOCUS; GENETIC TRANSCRIPTION; MAMMARY GLAND; MOUSE; NONHUMAN; PANCREAS; PLACENTA; PREIMPLANTATION EMBRYO; PRIORITY JOURNAL; SERIAL ANALYSIS OF GENE EXPRESSION; VISUAL CORTEX;

ALTERNATIVE SPLICING; ANIMALS; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION, DEVELOPMENTAL; MICE; MICE, INBRED C57BL; MULTIGENE FAMILY; REPRODUCIBILITY OF RESULTS; RNA, UNTRANSLATED; TRANSCRIPTION, GENETIC;

ANIMALIA;

EID: 29444455072     PISSN: 00278424     EISSN: None     Source Type: Journal    
DOI: 10.1073/pnas.0509455102     Document Type: Article

References (36)

1. Saha, S., Sparks, A. B., Rago, C., Akmaev, V., Wang, C. J., Vogelstein, B., Kinzler, K. W. & Velculescu, V. E. (2002) Nat. Biotechnol. 20, 508-512.
2. Velculescu, V. E., Vogelstein, B. & Kinzler, K. W. (2000) Trends Genet. 16, 423-425.
3. Lu, J., Lal, A., Merriman, B., Nelson, S. & Riggins, G. (2004) Genomics 84, 631-636.
4. Su, A. I., Cooke, M. P., Ching, K. A., Hakak, Y., Walker, J. R., Wiltshire, T., Orth, A. P., Vega, R. G., Sapinoso, L. M., Moqrich, A., et al. (2002) Proc. Natl. Acad. Sci. USA 99, 4465-4470.
5. Zhang, W., Morris, Q. D., Chang, R., Shai, O., Bakowski, M. A., Mitsakakis, N., Mohammad, N., Robinson, M. D., Zirngibl, R., Somogyi, E., et al. (2004) J. Biol. 3, 21.
6. Bono, H., Yagi, K., Kasukawa, T., Nikaido, I., Tominaga, N., Miki, R., Mizuno, Y., Tomaru, Y., Goto, H., Nitanda, H., et al. (2003) Genome Res. 13, 1318-1323.
7. Yang, G. S., Stott, J. M., Smailus, D., Barber, S. A., Balasundaram, M., Marra, M. A. & Holt, R. A. (2005) BMC Genomics 6, 2.
8. Peters, D. G., Kassam, A. B., Yonas, H., O'Hare, E. H., Ferrell, R. E. & Brufsky, A. M. (1999) Nucleic Acids Res. 27, e39.
9. Ewing, B. & Green, P. (1998) Genome Res. 8, 186-194.
10. Waterston, R. H., Lindblad-Toh, K., Birney, E., Rogers, J., Abril, J. F., Agarwal, P., Agarwala, R., Ainscough, R., Alexandersson, M., An, P., et al. (2002) Nature 420, 520-562.
11. Stabenau, A., McVicker, G., Melsopp, C., Proctor, G., Clamp, M. & Birney, E. (2004) Genome Res. 14, 929-933.
12. Kent, W. J., Sugnet, C. W., Furey, T. S., Roskin, K. M., Pringle, T. H., Zahler, A. M. & Haussler, D. (2002) Genome Res. 12, 996-1006.
13. Altschul, S. F., Gish, W., Miller, W., Myers, E. W. & Lipman, D. J. (1990) J. Mol. Biol. 215, 403-410.
14. Rozen, S. & Skaletsky, H. (2000) Methods Mol. Biol. 132, 365-386.
15. Ashburner, M., Ball, C. A., Blake, J. A., Botstein, D., Butler, H., Cherry, J. M., Davis, A. P., Dolinski, K., Dwight, S. S., Eppig, J. T., et al. (2000) Nat. Genet. 25, 25-29.
16. Messina, D. N., Glasscock, J., Gish, W. & Lovett, M. (2004) Genome Res. 14, 2041-2047.
17. Strausberg, R. L., Feingold, E. A., Klausner, R. D. & Collins, F. S. (1999) Science 286, 455-457.
18. Strausberg, R. L., Feingold, E. A., Grouse, L. H., Derge, J. G., Klausner, R. D., Collins, F. S., Wagner, L., Shenmen, C. M., Schuler, G. D., Altschul, S. F., et al. (2002) Proc. Natl. Acad. Sci. USA 99, 16899-16903.
19. Gerhard, D. S., Wagner, L., Feingold, E. A., Shenmen, C. M., Grouse, L. H., Schuler, G., Klein, S. L., Old, S., Rasooly, R., Good, P., et al. (2004) Genome Res. 14, 2121-2127.
20. Pruitt, K. D., Tatusova, T. & Maglott, D. R. (2003) Nucleic Acids Res. 31, 34-37.
21. Pruitt, K. D. & Maglott, D. R. (2001) Nucleic Acids Res. 29, 137-140.
22. Wheeler, D. L., Church, D. M., Edgar, R., Federhen, S., Helmberg, W., Madden, T. L., Pontius, J. U., Schuler, G. D., Schriml, L. M., Sequeira, E., et al. (2004) Nucleic Acids Res. 32, D35-D40.
23. Carninci, P., Waki, K., Shiraki, T., Konno, H., Shibata, K., Itoh, M., Aizawa, K., Arakawa, T., Ishii, Y., Sasaki, D., et al. (2003) Genome Res. 13, 1273-1289.
24. Eyras, E., Caccamo, M., Curwen, V. & Clamp, M. (2004) Genome Res. 14, 976-987.
25. Birney, E., Andrews, T. D., Bevan, P., Caccamo, M., Chen, Y., Clarke, L., Coates, G., Cuff, J., Curwen, V., Cutts, T., et al. (2004) Genome Res. 14, 925-928.
26. Curwen, V., Eyras, E., Andrews, T. D., Clarke, L., Mongin, E., Searle, S. M. & Clamp, M. (2004) Genome Res. 14, 942-950.
27. Stalker, J., Gibbins, B., Meidl, P., Smith, J., Spooner, W., Hotz, H. R. & Cox, A. V. (2004) Genome Res. 14, 951-955.
28. International Human Genome Sequencing Consortium (2004) Nature 431, 931-945.
29. Chen, J., Sun, M., Kent, W. J., Huang, X., Xie, H., Wang, W., Zhou, G., Shi, R. Z. & Rowley, J. D. (2004) Nucleic Acids Res. 32, 4812-4820.
30. Quere, R., Manchon, L., Lejeune, M., Clement, O., Pierrat, F., Bonafoux, B., Commes, T., Piquemal, D. & Marti, J. (2004) Nucleic Acids Res. 32, e163.
31. Cawley, S., Bekiranov, S., Ng, H. H., Kapranov, P., Sekinger, E. A., Kampa, D., Piccolboni, A., Sementchenko, V., Cheng, J., Williams, A. J., et al. (2004) Cell 116, 499-509.
32. Maniatis, T. & Tasic, B. (2002) Nature 418, 236-243.
33. Zhao, J., Hyman, L. & Moore, C. (1999) Microbiol. Mol. Biol. Rev. 63, 405-445.
34. Zavolan, M., Kondo, S., Schonbach, C., Adachi, J., Hume, D. A., Hayashizaki, Y. & Gaasterland, T. (2003) Genome Res. 13, 1290-1300.
35. Audic, S. & Claverie, J. M. (1997) Genome Res. 7, 986-995.
36. Kiyosawa, H., Mise, N., Iwase, S., Hayashizaki, Y. & Abe, K. (2005) Genome Res. 15, 463-474.