RESCUE: An artificial neural network tool for the NMR spectral assignment of proteins

Journal of Biomolecular NMR

Volumn 15, Issue 1, 1999, Pages 15-26

  Pons, J L ^a   Delsuc, M A ^a  

^a CENTRE DE BIOCHIMIE STRUCTURALE   (France)

Author keywords

Artificial neural network; Automated assignment; BioMagResBank; Chemical shift; Fuzzy logic; NMR of protein

Indexed keywords

PROTEIN;

AMINO ACID ANALYSIS; ARTICLE; ARTIFICIAL NEURAL NETWORK; MODEL; NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY; PEPTIDE ANALYSIS; PRIORITY JOURNAL; PROTON NUCLEAR MAGNETIC RESONANCE;

AMINO ACID SEQUENCE; DATABASES, FACTUAL; HUMANS; HYDROGEN; MAGNETIC RESONANCE SPECTROSCOPY; MOLECULAR SEQUENCE DATA; NEOPLASM PROTEINS; NEURAL NETWORKS (COMPUTER); PEPTIDES; PROTEINS; SOFTWARE;

EID: 0032866939     PISSN: 09252738     EISSN: None     Source Type: Journal    
DOI: 10.1023/A:1008338605320     Document Type: Article

References (26)

1. Barthe, P., Yang, Y.S., Chiche, L., Hoh, F., Strub, M.P., Guignard, L., Soulier, J., Stern, M.H., van Tilbeurgh, H., Lhoste, J.M. and Roumestand, C. (1997) J. Mol. Biol., 274, 801-815.
2. Bontems, F., Roumestand, C., Gilquin, B., Ménez, A. and Flavio, T. (1991) Science, 254, 1521-1523.
3. Choy, W.Y., Sanctuary, B.C. and Zhu, G. (1997) J. Chem. Inf. Comput. Sci., 37, 1086-1094.
4. Foray, M.F., Lancelin, J.M., Hollecker, M. and Marion, D. (1993) Eur. J. Biochem., 211, 813-820.
5. Hare, B.J. and Prestegard, J.H. (1994) J. Biomol. NMR, 4, 35-46.
6. Huang, K., Andrec, M., Heald, S., Blake, P. and Prestegard, J.H. (1997) J. Biomol. NMR, 10, 45-52.
7. Kuszewski, J., Gronenborn, A.M. and Clore, G.M. (1995) J. Magn. Reson., B107, 293-297.
8. Malliavin, T.E., Pons, J.L. and Delsuc, M.A. (1998) Bioinformatics, 14, 624-631.
9. Massefski, W., Redfield, A.G., Hare, D. and Miller, C. (1990) Science, 249, 521-524.
10. Matlab (1998) The MathWorks, Inc., Natick, MA.
11. Merutka, G., Dyson, H.J. and Wright, P.E. (1995) J. Biomol. NMR, 5, 14-24.
12. Nishio, H., Nishiuchi, Y., De Medeiros, C.L., Rowan, E.G., Harvey, A.L., Katoh, E., Yamazaki, T., Kimura, T. and Sakakibara, S. (1998) J. Pept. Res., 55, 355-364.
13. Pons, J.L., Malliavin, T.E. and Delsuc, M.A. (1996) J. Biomol. NMR, 8, 445-452.
14. Radomski, J.P., Van Halbeek, H. and Meyer, B. (1994) Nat. Struct. Biol., 1, 217-218.
15. Rosenblatt, F. (1957) Report, Cornell Aeronautical Laboratory, Ithaca, NY
16. Rosenblatt, F. (1958) Phys. Rev., 65, 386-408.
17. Rumelhart, D.E., Hinton, G.E. and Williams, R.J. (1986) In Parallel Distributed Processing (Eds. Rumelhart, D.E. and McClelland, J.J.), MIT Press, Cambridge, MA, pp. 318-362.
18. Rumelhart, D.E. and McClelland, J.J. (1986) Parallel Distributed Processing, MIT Press, Cambridge, MA.
19. Seavey, B.R., Farr, E.A., Westler, W.M. and Markley, L. (1991) J. Biomol. NMR, 1, 217-236.
20. Wishart, D.S., Bigam, G.G., Holm, A., Hodges, R.S. and Sykes, B.D. (1995a) J. Biomol. NMR, 5, 67-81.
21. Wishart, D.S., Bigam, C.G., Yao, J., Abildgaard, F., Dyson, H.J., Oldfield, E., Markley, J.L. and Sykes, B.D. (1995b) J. Biomol. NMR, 6, 135-140.
22. Wishart, D.S. and Sykes, B.D. (1994) In Nuclear Magnetic Resonance, Pt C, Vol. 239 (Eds. Oppenheimer, T.L. and James, N.J.) Academic Press, San Diego, CA, pp. 363-392.
23. Wishart, D.S., Sykes, B.D. and Richards, F.M. (1991) J. Mol. Biol., 222, 311-333.
24. Wüthrich, K. (1986) NMR of Proteins and Nucleic Acids, Wiley, New York, NY
25. Yang, Y.S., Guignard, L., Padilla, A., Hoh, F., Strub, M.P., Stern, M.H., Lhoste, J.M. and Roumestand, C. (1998) J. Biomol. NMR, 11, 337-354.
26. Zadeh, L. (1988) Computer, 21, 83-93.