메뉴 건너뛰기




Volumn 9, Issue , 2008, Pages

Combination of native and denaturing PAGE for the detection of protein binding regions in long fragments of genomic DNA

Author keywords

[No Author keywords available]

Indexed keywords

DNA FRAGMENT; GENOMIC DNA; NEUROTROPHIN RECEPTOR P75; PHOSPHORUS 32; RESTRICTION ENDONUCLEASE; DNA; DNA BINDING PROTEIN; NERVE GROWTH FACTOR RECEPTOR;

EID: 46049089084     PISSN: None     EISSN: 14712164     Source Type: Journal    
DOI: 10.1186/1471-2164-9-272     Document Type: Article
Times cited : (2)

References (20)
  • 1
    • 0019878376 scopus 로고
    • Equilibria and kinetics of lac repressor-operator interactions by polyacrylamide gel electrophoresis
    • 327619 6275366 10.1093/nar/9.23.6505
    • Fried M Crothers DM Equilibria and kinetics of lac repressor-operator interactions by polyacrylamide gel electrophoresis Nucleic Acids Res 1981, 9:6505-6525 327619 6275366 10.1093/nar/9.23.6505
    • (1981) Nucleic Acids Res , vol.9 , pp. 6505-6525
    • Fried, M.1    Crothers, D.M.2
  • 2
    • 0019877067 scopus 로고
    • A gel electrophoresis method for quantifying the binding of proteins to specific DNA regions: Application to components of the Escherichia coli lactose operon regulatory system
    • 327330 6269071 10.1093/nar/9.13.3047
    • Garner MM Revzin A A gel electrophoresis method for quantifying the binding of proteins to specific DNA regions: Application to components of the Escherichia coli lactose operon regulatory system Nucleic Acids Res 1981, 9:3047-3060 327330 6269071 10.1093/nar/9.13.3047
    • (1981) Nucleic Acids Res , vol.9 , pp. 3047-3060
    • Garner, M.M.1    Revzin, A.2
  • 3
    • 34548169696 scopus 로고    scopus 로고
    • Electrophoretic mobility shift assay (EMSA) for detecting protein-nucleic acid interactions
    • 10.1038/nprot.2007.249 17703195
    • Hellman LM Fried MG Electrophoretic mobility shift assay (EMSA) for detecting protein-nucleic acid interactions Nat Protoc 2007, 2:1849-1861 10.1038/nprot.2007.249 17703195
    • (2007) Nat Protoc , vol.2 , pp. 1849-1861
    • Hellman, L.M.1    Fried, M.G.2
  • 4
    • 0024323026 scopus 로고
    • Measurement of protein-DNA interaction parameters by electrophoresis mobility shift assay
    • 10.1002/elps.1150100515 2670548
    • Fried MG Measurement of protein-DNA interaction parameters by electrophoresis mobility shift assay Electrophoresis 1989, 10:366-376 10.1002/elps.1150100515 2670548
    • (1989) Electrophoresis , vol.10 , pp. 366-376
    • Fried, M.G.1
  • 5
    • 0026346185 scopus 로고
    • Gel retardation
    • 1779832
    • Carey J Gel retardation Methods Enzymol 1991, 208:103-117 1779832
    • (1991) Methods Enzymol , vol.208 , pp. 103-117
    • Carey, J.1
  • 6
    • 0037424237 scopus 로고    scopus 로고
    • DNA-binding mechanism of O6-alkylguanine-DNA alkyltransferase. Effects of protein and DNA alkylation on complex stability
    • 10.1074/jbc.M211854200 12496275
    • Rasimas JJ Pegg AE Fried MG DNA-binding mechanism of O6-alkylguanine-DNA alkyltransferase. Effects of protein and DNA alkylation on complex stability J Biol Chem 2003, 278:7973-7980 10.1074/jbc.M211854200 12496275
    • (2003) J Biol Chem , vol.278 , pp. 7973-7980
    • Rasimas, J.J.1    Pegg, A.E.2    Fried, M.G.3
  • 7
    • 0031298187 scopus 로고    scopus 로고
    • A nuclear factor other than Sp1 binds the GC-rich promoter of the gene encoding rat poly(ADP-ribose) polymerase in vitro
    • 10.1139/bcb-75-4-427 9493965
    • Laniel MA Bergeron MJ Poirier GG Guerin SL A nuclear factor other than Sp1 binds the GC-rich promoter of the gene encoding rat poly(ADP-ribose) polymerase in vitro Biochem Cell Biol 1997, 75:427-434 10.1139/ bcb-75-4-427 9493965
    • (1997) Biochem Cell Biol , vol.75 , pp. 427-434
    • Laniel, M.A.1    Bergeron, M.J.2    Poirier, G.G.3    Guerin, S.L.4
  • 8
    • 0024971458 scopus 로고
    • Phenomenological theory of gel electrophoresis of protein-nucleic acid complexes
    • 2793842
    • Cann JR Phenomenological theory of gel electrophoresis of protein-nucleic acid complexes J Biol Chem 1989, 264:17032-17040 2793842
    • (1989) J Biol Chem , vol.264 , pp. 17032-17040
    • Cann, J.R.1
  • 9
    • 0031080891 scopus 로고    scopus 로고
    • Sequestration stabilizes lac repressor-DNA complexes during gel electrophoresis
    • 10.1006/abio.1996.9944 9025972
    • Vossen KM Fried MG Sequestration stabilizes lac repressor-DNA complexes during gel electrophoresis Anal Biochem 1997, 245:85-92 10.1006/ abio.1996.9944 9025972
    • (1997) Anal Biochem , vol.245 , pp. 85-92
    • Vossen, K.M.1    Fried, M.G.2
  • 10
    • 0025752978 scopus 로고
    • Identification of protein binding sites in genomic DNA by two-dimensional gel electrophoresis
    • 333888 1827523 10.1093/nar/19.7.1369
    • Boffini A Prentki P Identification of protein binding sites in genomic DNA by two-dimensional gel electrophoresis Nucleic Acids Res 1991, 19:1369-1374 333888 1827523 10.1093/nar/19.7.1369
    • (1991) Nucleic Acids Res , vol.19 , pp. 1369-1374
    • Boffini, A.1    Prentki, P.2
  • 11
    • 33747624443 scopus 로고    scopus 로고
    • Identification and mapping of DNA binding proteins target sequences in long genomic regions by two-dimensional EMSA
    • 16869519
    • Chernov IP Akopov SB Nikolaev LG Sverdlov ED Identification and mapping of DNA binding proteins target sequences in long genomic regions by two-dimensional EMSA Biotechniques 2006, 41:91-96 16869519
    • (2006) Biotechniques , vol.41 , pp. 91-96
    • Chernov, I.P.1    Akopov, S.B.2    Nikolaev, L.G.3    Sverdlov, E.D.4
  • 12
    • 0024365536 scopus 로고
    • Defining the sequence specificity of DNA-binding proteins by selecting binding sites from random-sequence oligonucleotides: Analysis of yeast GCN4 protein
    • 362762 2674675
    • Oliphant AR Brandl CJ Struhl K Defining the sequence specificity of DNA-binding proteins by selecting binding sites from random-sequence oligonucleotides: Analysis of yeast GCN4 protein Mol Cell Biol 1989, 9;2944-2949 362762 2674675
    • (1989) Mol Cell Biol , vol.9 , pp. 2944-2949
    • Oliphant, A.R.1    Brandl, C.J.2    Struhl, K.3
  • 13
    • 34248515435 scopus 로고    scopus 로고
    • SELEX experiments: New prospects, applications and data analysis in inferring regulatory pathways
    • 10.1016/j.bioeng.2007.03.001 17428731
    • Djordjevic M SELEX experiments: New prospects, applications and data analysis in inferring regulatory pathways Biomol Eng 2007, 24:179-189 10.1016/j.bioeng.2007.03.001 17428731
    • (2007) Biomol Eng , vol.24 , pp. 179-189
    • Djordjevic, M.1
  • 14
    • 0345704610 scopus 로고
    • Establishment of a noradrenergic clonal line of rat adrenal pheochromocytoma cells which respond to nerve growth factor
    • 430592 1065897 10.1073/pnas.73.7.2424
    • Greene LA Tischler AS Establishment of a noradrenergic clonal line of rat adrenal pheochromocytoma cells which respond to nerve growth factor Proc Natl Acad Sci U S A 1976, 73:2424-2428 430592 1065897 10.1073/ pnas.73.7.2424
    • (1976) Proc Natl Acad Sci U S A , vol.73 , pp. 2424-2428
    • Greene, L.A.1    Tischler, A.S.2
  • 17
    • 0018199224 scopus 로고
    • DNAse footprinting: A simple method for the detection of protein-DNA binding specificity
    • 342238 212715 10.1093/nar/5.9.3157
    • Galas DJ Schmitz A DNAse footprinting: A simple method for the detection of protein-DNA binding specificity Nucleic Acids Res 1978, 5:3157-3170 342238 212715 10.1093/nar/5.9.3157
    • (1978) Nucleic Acids Res , vol.5 , pp. 3157-3170
    • Galas, D.J.1    Schmitz, A.2
  • 18
    • 0022437260 scopus 로고
    • Quantitative DNase footprint titration: A method for studying protein-DNA interactions
    • 3773731
    • Brenowitz M Senear DF Shea MA Ackers GK Quantitative DNase footprint titration: A method for studying protein-DNA interactions Methods Enzymol 1986, 130:132-181 3773731
    • (1986) Methods Enzymol , vol.130 , pp. 132-181
    • Brenowitz, M.1    Senear, D.F.2    Shea, M.A.3    Ackers, G.K.4
  • 20
    • 33746658129 scopus 로고    scopus 로고
    • L1 antisense promoter drives tissue-specific transcription of human genes
    • 1559930 16877819
    • Matlik K Redik K Speek M L1 antisense promoter drives tissue-specific transcription of human genes J Biomed Biotechnol 2006, 2006:71753 1559930 16877819
    • (2006) J Biomed Biotechnol , vol.2006 , pp. 71753
    • Matlik, K.1    Redik, K.2    Speek, M.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.