-
6
-
-
0027794972
-
-
Schlitter, J.; Engels, M.; Krüger, P.; Jacoby, E.; Wollmer, A. Mol. Simul. 1993, 10, 291.
-
(1993)
Mol. Simul
, vol.10
, pp. 291
-
-
Schlitter, J.1
Engels, M.2
Krüger, P.3
Jacoby, E.4
Wollmer, A.5
-
7
-
-
0000220710
-
Nudged Elastic Band Method for Finding Minimum Energy Paths of Transitions
-
Berne, B. J, Ciccotti, G, Coker, D. F, Eds, World Scientific: Singapore, Chapter 16, p
-
Jónsson, H.; Jacobsen, K. W. Nudged Elastic Band Method for Finding Minimum Energy Paths of Transitions. In Classical and Quantum Dynamics in Condensed Phase Simulations; Berne, B. J., Ciccotti, G., Coker, D. F., Eds.; World Scientific: Singapore, 1998; Chapter 16, p 385.
-
(1998)
Classical and Quantum Dynamics in Condensed Phase Simulations
, pp. 385
-
-
Jónsson, H.1
Jacobsen, K.W.2
-
8
-
-
0035312645
-
-
Isralewitz, B.; Gao, M.; Schulten, K. Curr. Opin. Struct. Biol. 2001, 11, 224.
-
(2001)
Curr. Opin. Struct. Biol
, vol.11
, pp. 224
-
-
Isralewitz, B.1
Gao, M.2
Schulten, K.3
-
9
-
-
11444249857
-
-
Bolhuis, P. G.; Dellago, C.; Chandler, D.; Geissler, P. Annu. Rev. Phys. Chem. 2002, 59, 291.
-
(2002)
Annu. Rev. Phys. Chem
, vol.59
, pp. 291
-
-
Bolhuis, P.G.1
Dellago, C.2
Chandler, D.3
Geissler, P.4
-
10
-
-
0036696910
-
-
E, W.; Ren, W.; Vanden-Eijnden, E. Phys. Rev. B 2002, 66, 052301.
-
E, W.; Ren, W.; Vanden-Eijnden, E. Phys. Rev. B 2002, 66, 052301.
-
-
-
-
12
-
-
33746255471
-
-
Maragliano, L.; Fischer, A.; Vanden-Eijnden, E.; Ciccotti, G. J. Chem. Phys. 2006, 125, 024106.
-
(2006)
J. Chem. Phys
, vol.125
, pp. 024106
-
-
Maragliano, L.1
Fischer, A.2
Vanden-Eijnden, E.3
Ciccotti, G.4
-
13
-
-
33846946504
-
-
Branduardi, D.; Gervasio, F. L.; Parrinello, M. J. Chem. Phys. 2007, 126, 054103.
-
(2007)
J. Chem. Phys
, vol.126
, pp. 054103
-
-
Branduardi, D.1
Gervasio, F.L.2
Parrinello, M.3
-
15
-
-
35048855023
-
-
Yang, H.; Wu, H.; Li, D.; Han, L.; Huo, S. J. Chem. Theory Comput. 2007, 3, 17-25.
-
(2007)
J. Chem. Theory Comput
, vol.3
, pp. 17-25
-
-
Yang, H.1
Wu, H.2
Li, D.3
Han, L.4
Huo, S.5
-
16
-
-
55949117962
-
-
Ferrario, M, Ciccotti, G, Binder, K, Eds, Springer
-
Vanden-Eijnden, E. In Transition Path Theory; Ferrario, M., Ciccotti, G., Binder, K., Eds.; Springer: 2006; Vol. 2.
-
(2006)
Transition Path Theory
, vol.2
-
-
Vanden-Eijnden, E.1
-
17
-
-
0038515443
-
-
van Erp, T. S.; Moroni, D.; Bolhuis, P. G. J. Chem. Phys. 2003, 118, 7762-7774.
-
(2003)
J. Chem. Phys
, vol.118
, pp. 7762-7774
-
-
van Erp, T.S.1
Moroni, D.2
Bolhuis, P.G.3
-
20
-
-
2942567954
-
-
Swope, W.; Pitera, J.; Suits, F. J. Phys. Chem. B 2004, 108, 6571-6581.
-
(2004)
J. Phys. Chem. B
, vol.108
, pp. 6571-6581
-
-
Swope, W.1
Pitera, J.2
Suits, F.3
-
21
-
-
2942560604
-
-
Swope, W.; Pitera, J.; Suits, F.; Pitman, M.; Eleftheriou, M.; Fitch, B.; Germain, R.; Rayshubski, A.; Ward, T.; Zhestkov, Y.; Zhou, R. J. Phys. Chem. B 2004, 105, 6582-6594.
-
(2004)
J. Phys. Chem. B
, vol.105
, pp. 6582-6594
-
-
Swope, W.1
Pitera, J.2
Suits, F.3
Pitman, M.4
Eleftheriou, M.5
Fitch, B.6
Germain, R.7
Rayshubski, A.8
Ward, T.9
Zhestkov, Y.10
Zhou, R.11
-
22
-
-
17544365232
-
-
E, W.; Ren, W.; Vanden-Eijnden, E. J. Phys. Chem. B 2005, 109, 6688-6693.
-
E, W.; Ren, W.; Vanden-Eijnden, E. J. Phys. Chem. B 2005, 109, 6688-6693.
-
-
-
-
25
-
-
84986512474
-
-
Brooks, B. R.; Bruccoleri, R. E.; Olafson, B. D.; States, D. J.; Swaminathan, S.; Karplus, M. J. Comput. Chem. 1983, 4, 187.
-
(1983)
J. Comput. Chem
, vol.4
, pp. 187
-
-
Brooks, B.R.1
Bruccoleri, R.E.2
Olafson, B.D.3
States, D.J.4
Swaminathan, S.5
Karplus, M.6
-
26
-
-
3142714765
-
-
MacKerell, A. D., Jr.; Feig, M.; Brooks, C. L., III J. Comput. Chem 2004, 25, 1400.
-
MacKerell, A. D., Jr.; Feig, M.; Brooks, C. L., III J. Comput. Chem 2004, 25, 1400.
-
-
-
-
28
-
-
0001563395
-
-
Du, R.; Pande, V. S.; Grosberg, A. Y.; Tanaka, T.; Shakhnovich, E. S. J. Chem. Phys. 1998, 108, 334-350.
-
(1998)
J. Chem. Phys
, vol.108
, pp. 334-350
-
-
Du, R.1
Pande, V.S.2
Grosberg, A.Y.3
Tanaka, T.4
Shakhnovich, E.S.5
-
30
-
-
0030623823
-
-
Bahar, I.; Atilgan, A. R.; Erman, B. Fold. Des. 1997, 2, 173.
-
(1997)
Fold. Des
, vol.2
, pp. 173
-
-
Bahar, I.1
Atilgan, A.R.2
Erman, B.3
-
32
-
-
33747065536
-
-
Okazaki, K.-i.; Koga, N.; Takada, S.; Onuchic, J. N.; Wolynes, P. G. PNAS 2006, 103, 11844-11849.
-
(2006)
PNAS
, vol.103
, pp. 11844-11849
-
-
Okazaki, K.-I.1
Koga, N.2
Takada, S.3
Onuchic, J.N.4
Wolynes, P.G.5
-
33
-
-
0000710672
-
-
Socci, N. D.; Onuchic, J. N.; Wolynes, P. G. J. Chem. Phys. 1996, 104, 5860-5868.
-
(1996)
J. Chem. Phys
, vol.104
, pp. 5860-5868
-
-
Socci, N.D.1
Onuchic, J.N.2
Wolynes, P.G.3
-
34
-
-
44949244677
-
-
Grossfield, A. http://dasher.wustl.edu/alan/, 2003.
-
(2003)
Grossfield, A
-
-
-
35
-
-
0034705109
-
-
Bolhuis, P. G.; Dellago, C.; Chandler, D. PNAS 2000, 97, 5877.
-
(2000)
PNAS
, vol.97
, pp. 5877
-
-
Bolhuis, P.G.1
Dellago, C.2
Chandler, D.3
-
37
-
-
33746187786
-
-
Ren, W.; Vanden-Eijnden, E.; Maragakis, P.; E, W. J. Chem. Phys. 2005, 123, 134109.
-
Ren, W.; Vanden-Eijnden, E.; Maragakis, P.; E, W. J. Chem. Phys. 2005, 123, 134109.
-
-
-
-
38
-
-
0035937443
-
-
Volkman, B. F.; Lipson, D.; Wemmer, D. E.; Kern, D. Science 2001, 291, 2429-2433.
-
(2001)
Science
, vol.291
, pp. 2429-2433
-
-
Volkman, B.F.1
Lipson, D.2
Wemmer, D.E.3
Kern, D.4
-
39
-
-
0033599026
-
-
Kern, D.; Volkman, B. F.; Luginbühl, P.; Nohaile, M. J.; Kustu, S.; Wemmer, D. E. Nature 1999, 402, 894.
-
(1999)
Nature
, vol.402
, pp. 894
-
-
Kern, D.1
Volkman, B.F.2
Luginbühl, P.3
Nohaile, M.J.4
Kustu, S.5
Wemmer, D.E.6
-
41
-
-
84906362888
-
-
Chu, J.-W.; Voth, G. A. Biophys. J. 2007, biophysj. 107.112060.
-
Chu, J.-W.; Voth, G. A. Biophys. J. 2007, biophysj. 107.112060.
-
-
-
-
42
-
-
34548304871
-
-
Zheng, W.; Brooks, B. R.; Hummer, G. Proteins 2007, 69, 43.
-
(2007)
Proteins
, vol.69
, pp. 43
-
-
Zheng, W.1
Brooks, B.R.2
Hummer, G.3
|