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Volumn 108, Issue 21, 2004, Pages 6582-6594

Describing protein folding kinetics by molecular dynamics simulations. 2. Example applications to alanine dipeptide and a β-hairpin peptide

Author keywords

[No Author keywords available]

Indexed keywords

FUNCTIONS; HYDROGEN BONDS; MARKOV PROCESSES; MOLECULAR DYNAMICS; MONTE CARLO METHODS; PARAMETER ESTIMATION; REACTION KINETICS; SAMPLING;

EID: 2942560604     PISSN: 15206106     EISSN: None     Source Type: Journal    
DOI: 10.1021/jp037422q     Document Type: Article
Times cited : (173)

References (56)
  • 35
    • 2942584767 scopus 로고    scopus 로고
    • note
    • In evaluating this expression, we adopt a convention where we assume that if the trajectory had gone one time step longer, it would have left the state it was in at the end of the simulation. Similarly, we assume that the state immediately before the first time step produced during the simulation is in a different state than that of the first step of the simulation.
  • 47
    • 2942621779 scopus 로고    scopus 로고
    • December 31
    • IMPACT, version 1.5, December 31, 2001; Molecular simulation software; Schrodinger, Inc.: New York, 1999.
    • (2001) IMPACT, Version 1.5
  • 48
    • 2942526749 scopus 로고    scopus 로고
    • Schrodinger, Inc.: New York
    • IMPACT, version 1.5, December 31, 2001; Molecular simulation software; Schrodinger, Inc.: New York, 1999.
    • (1999) Molecular Simulation Software
  • 53
    • 2942588321 scopus 로고    scopus 로고
    • note
    • We used a nonmass weighted radius of gyration based on the coordinates of the side chain heavy atoms of Trp43, Tyr45, Phe52, and Val54.


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.