메뉴 건너뛰기




Volumn 19, Issue 7, 2008, Pages 987-996

Structures, Fragmentation, and Protonation of Trideoxynucleotide CCC Mono- and Dianions

Author keywords

[No Author keywords available]

Indexed keywords

HIGH PERFORMANCE LIQUID CHROMATOGRAPHY; MASS SPECTROMETRY; MODAL ANALYSIS; NUCLEIC ACIDS; ORGANIC ACIDS; QUANTUM CHEMISTRY;

EID: 45849145427     PISSN: 10440305     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.jasms.2008.03.009     Document Type: Article
Times cited : (5)

References (44)
  • 1
    • 33748168091 scopus 로고
    • Electrospray Ion Source. Another Variation on the Free-Jet Theme
    • Yamashita M., and Fenn J.B. Electrospray Ion Source. Another Variation on the Free-Jet Theme. J. Phys. Chem. 88 (1984) 4451-4459
    • (1984) J. Phys. Chem. , vol.88 , pp. 4451-4459
    • Yamashita, M.1    Fenn, J.B.2
  • 3
    • 5344270491 scopus 로고    scopus 로고
    • Gas-Phase Fragmentation of Oligonucleotide Ions
    • Wu J., and McLuckey S.A. Gas-Phase Fragmentation of Oligonucleotide Ions. Int. J. Mass Spectrom. 237 (2004) 197-241
    • (2004) Int. J. Mass Spectrom. , vol.237 , pp. 197-241
    • Wu, J.1    McLuckey, S.A.2
  • 4
    • 0035263299 scopus 로고    scopus 로고
    • Electrospray Ionization Mass Spectrometry of Oligonucleotide Complexes with Drugs, Metals, and Proteins
    • Beck J.L., Colgrave M.L., Ralph S.F., and Sheil M.M. Electrospray Ionization Mass Spectrometry of Oligonucleotide Complexes with Drugs, Metals, and Proteins. Mass Spectrom. Rev. 20 (2001) 61-87
    • (2001) Mass Spectrom. Rev. , vol.20 , pp. 61-87
    • Beck, J.L.1    Colgrave, M.L.2    Ralph, S.F.3    Sheil, M.M.4
  • 5
    • 11844257550 scopus 로고    scopus 로고
    • Charge State-Dependent Fragmentation of Oligonucleotide/Metal Complexes
    • Keller K.M., and Brodbelt J.S. Charge State-Dependent Fragmentation of Oligonucleotide/Metal Complexes. J. Am. Soc. Mass Spectrom. 16 (2005) 28-37
    • (2005) J. Am. Soc. Mass Spectrom. , vol.16 , pp. 28-37
    • Keller, K.M.1    Brodbelt, J.S.2
  • 7
    • 33748986566 scopus 로고    scopus 로고
    • Fragmentation of Oligoribonucleotides from Gas-Phase Ion-Electron Reactions
    • Yang J., and Håkansson K. Fragmentation of Oligoribonucleotides from Gas-Phase Ion-Electron Reactions. J. Am. Soc. Mass Spectrom. 17 (2006) 1369-1375
    • (2006) J. Am. Soc. Mass Spectrom. , vol.17 , pp. 1369-1375
    • Yang, J.1    Håkansson, K.2
  • 8
    • 0035814777 scopus 로고    scopus 로고
    • Investigating the Effect of Transition Metal Ion Oxidation State on Oligodeoxyribonucleotide Binding by Matrix-Assisted Laser Desorption/Ionization Fourier Transform Ion Cyclotron Resonance Mass Spectrometry
    • Hettich R.L. Investigating the Effect of Transition Metal Ion Oxidation State on Oligodeoxyribonucleotide Binding by Matrix-Assisted Laser Desorption/Ionization Fourier Transform Ion Cyclotron Resonance Mass Spectrometry. Int. J. Mass Spectrom. 204 (2001) 55-75
    • (2001) Int. J. Mass Spectrom. , vol.204 , pp. 55-75
    • Hettich, R.L.1
  • 9
    • 14744295471 scopus 로고    scopus 로고
    • Investigation of Metal-Oligonucleotide Complexes by Nanoelectrospray Tandem Mass Spectrometry in the Positive Mode
    • Monn S.T.M., and Schürch S. Investigation of Metal-Oligonucleotide Complexes by Nanoelectrospray Tandem Mass Spectrometry in the Positive Mode. J. Am. Soc. Mass Spectrom. 16 (2005) 370-378
    • (2005) J. Am. Soc. Mass Spectrom. , vol.16 , pp. 370-378
    • Monn, S.T.M.1    Schürch, S.2
  • 10
    • 33748963270 scopus 로고    scopus 로고
    • DNA. Stability in the Gas versus Solution Phases: A Systematic Study of Thirty-One Duplexes with Varying Length, Sequence, and Charge Level
    • Pan S., Sun X.S.P., and Lee J.K. DNA. Stability in the Gas versus Solution Phases: A Systematic Study of Thirty-One Duplexes with Varying Length, Sequence, and Charge Level. J. Am. Soc. Mass Spectrom. 17 (2006) 1383-1395
    • (2006) J. Am. Soc. Mass Spectrom. , vol.17 , pp. 1383-1395
    • Pan, S.1    Sun, X.S.P.2    Lee, J.K.3
  • 11
    • 0033118519 scopus 로고    scopus 로고
    • Coordination-Ionspray-MS (CIS-MS), a Universal Detection and Characterization Method for Direct Coupling with Separation Techniques
    • Bayer E., Gforer P., and Rentel C. Coordination-Ionspray-MS (CIS-MS), a Universal Detection and Characterization Method for Direct Coupling with Separation Techniques. Angew. Chem. Int. Ed. 38 (1999) 992-995
    • (1999) Angew. Chem. Int. Ed. , vol.38 , pp. 992-995
    • Bayer, E.1    Gforer, P.2    Rentel, C.3
  • 12
    • 0001891352 scopus 로고
    • The Effects of Metal Ions on the Structure and Function of Nucleic Acids
    • Eichhorn G.L., and Marzilli L.G. (Eds), Elsevier, New York
    • Eichhorn G.L. The Effects of Metal Ions on the Structure and Function of Nucleic Acids. In: Eichhorn G.L., and Marzilli L.G. (Eds). Metal Ions in Generic Information Transfer (1981), Elsevier, New York 1-46
    • (1981) Metal Ions in Generic Information Transfer , pp. 1-46
    • Eichhorn, G.L.1
  • 13
    • 0001162171 scopus 로고    scopus 로고
    • Metal Binding Effects on Nucleic Acid Structures
    • Atwood J.L., Davies J.E.D., Macnicol D.D., and Vogtle F. (Eds), Elsevier Pergamon, New York
    • Aoki K. Metal Binding Effects on Nucleic Acid Structures. In: Atwood J.L., Davies J.E.D., Macnicol D.D., and Vogtle F. (Eds). Comprehensive Supramolecular Chemistry (1996), Elsevier Pergamon, New York 249-294
    • (1996) Comprehensive Supramolecular Chemistry , pp. 249-294
    • Aoki, K.1
  • 14
    • 0035367927 scopus 로고    scopus 로고
    • DNA-Cation Interactions: The Major and Minor Grooves are Flexible Ionophores
    • Hud N.V., and Polak M. DNA-Cation Interactions: The Major and Minor Grooves are Flexible Ionophores. Curr. Opin. Sruct. Biol. 11 (2001) 293-301
    • (2001) Curr. Opin. Sruct. Biol. , vol.11 , pp. 293-301
    • Hud, N.V.1    Polak, M.2
  • 15
    • 1042268168 scopus 로고    scopus 로고
    • G-Quartets 40 Years Later: From 5′-GMP to Molecular Biology and Supramolecular Chemistry
    • Davis J.T. G-Quartets 40 Years Later: From 5′-GMP to Molecular Biology and Supramolecular Chemistry. Angew. Chem. Int. Ed. 43 (2004) 668-698
    • (2004) Angew. Chem. Int. Ed. , vol.43 , pp. 668-698
    • Davis, J.T.1
  • 16
    • 34447564263 scopus 로고    scopus 로고
    • A Novel Chemical Reactor Suited for Studies of Biophysical Chemistry: Construction and Evaluation of a Selected Ion Flow Tube Utilizing an Electrospray Ion Source and a Triple Quadrupole Detection System
    • Koyanagi G.K., Baranov V.I., Tanner S.D., Anichina J., Jarvis M.J.Y., Feil S., and Bohme D.K. A Novel Chemical Reactor Suited for Studies of Biophysical Chemistry: Construction and Evaluation of a Selected Ion Flow Tube Utilizing an Electrospray Ion Source and a Triple Quadrupole Detection System. Int. J. Mass Spectrom. 265 2/3 (2007) 295-301
    • (2007) Int. J. Mass Spectrom. , vol.265 , Issue.2-3 , pp. 295-301
    • Koyanagi, G.K.1    Baranov, V.I.2    Tanner, S.D.3    Anichina, J.4    Jarvis, M.J.Y.5    Feil, S.6    Bohme, D.K.7
  • 18
    • 14244271476 scopus 로고    scopus 로고
    • Molecular Dynamics. Simulation of Nucleic Acids: Successes, Limitations, and Promise
    • Cheatham III T.E., and Young M.A. Molecular Dynamics. Simulation of Nucleic Acids: Successes, Limitations, and Promise. Biopolymers 56 (2001) 232-256
    • (2001) Biopolymers , vol.56 , pp. 232-256
    • Cheatham III, T.E.1    Young, M.A.2
  • 20
    • 0031285825 scopus 로고    scopus 로고
    • Auxiliary Basis Sets for Main Row Atoms and Transition Metals and Their Use to Approximate Coulomb Potentials. Theoretical Chemistry Accounts: Theory, Computation, and Modeling
    • Eichkorn K., Weigend F., Treutler O., and Ahlrichs R. Auxiliary Basis Sets for Main Row Atoms and Transition Metals and Their Use to Approximate Coulomb Potentials. Theoretical Chemistry Accounts: Theory, Computation, and Modeling. Theor. Chim. Acta. 97 (1997) 119-124
    • (1997) Theor. Chim. Acta. , vol.97 , pp. 119-124
    • Eichkorn, K.1    Weigend, F.2    Treutler, O.3    Ahlrichs, R.4
  • 21
    • 26344435738 scopus 로고
    • Fully Optimized Contracted Gaussian Basis Sets for Atoms Li to Kr
    • Schäfer A., Horn H., and Ahlrichs R. Fully Optimized Contracted Gaussian Basis Sets for Atoms Li to Kr. J. Chem. Phys. 97 (1992) 2571-2577
    • (1992) J. Chem. Phys. , vol.97 , pp. 2571-2577
    • Schäfer, A.1    Horn, H.2    Ahlrichs, R.3
  • 22
    • 4243553426 scopus 로고
    • Density-Functional Exchange-Energy Approximation with Correct Asymptotic Behavior
    • Becke A.D. Density-Functional Exchange-Energy Approximation with Correct Asymptotic Behavior. Phys. Rev. A 38 (1988) 3098-4000
    • (1988) Phys. Rev. A , vol.38 , pp. 3098-4000
    • Becke, A.D.1
  • 23
    • 5944261746 scopus 로고
    • Density-Functional approximation for the Correlation Energy of the Inhomogeneous Electron Gas
    • Perdew J.P. Density-Functional approximation for the Correlation Energy of the Inhomogeneous Electron Gas. Phys. Rev. B 33 (1986) 8822-8824
    • (1986) Phys. Rev. B , vol.33 , pp. 8822-8824
    • Perdew, J.P.1
  • 24
    • 0040759177 scopus 로고    scopus 로고
    • RI-MP2: Optimized Auxiliary Basis Sets and Demonstration of Efficiency
    • Weigend F., Haser M., Patzelt H., and Ahlrichs R. RI-MP2: Optimized Auxiliary Basis Sets and Demonstration of Efficiency. Chem. Phys. Lett. 294 (1998) 143-152
    • (1998) Chem. Phys. Lett. , vol.294 , pp. 143-152
    • Weigend, F.1    Haser, M.2    Patzelt, H.3    Ahlrichs, R.4
  • 25
    • 0031285839 scopus 로고    scopus 로고
    • RI-MP2: First Derivatives and Global Consistency
    • Weigend F., and Häser M. RI-MP2: First Derivatives and Global Consistency. Theor. Chim. Acta. 97 (1997) 331-340
    • (1997) Theor. Chim. Acta. , vol.97 , pp. 331-340
    • Weigend, F.1    Häser, M.2
  • 27
    • 4243539377 scopus 로고
    • Electronic Structure Calculations on Workstation Computers: The Program System TURBOMOLE
    • Ahlrichs R., Baer M., Haser M., Horn H., and Kolmel C. Electronic Structure Calculations on Workstation Computers: The Program System TURBOMOLE. Chem. Phys. Lett. 162 (1989) 165-169
    • (1989) Chem. Phys. Lett. , vol.162 , pp. 165-169
    • Ahlrichs, R.1    Baer, M.2    Haser, M.3    Horn, H.4    Kolmel, C.5
  • 29
    • 0035561180 scopus 로고    scopus 로고
    • Fragmentation Mechanisms of Oligodeoxynucleotides Studied by H/D Exchange and Electrospray Ionization Tandem Mass Spectrometry
    • Wan K.X., Gross J., Hillenkamp F., and Gross M.L. Fragmentation Mechanisms of Oligodeoxynucleotides Studied by H/D Exchange and Electrospray Ionization Tandem Mass Spectrometry. J. Am. Soc. Mass Spectrom. 12 (2001) 193-205
    • (2001) J. Am. Soc. Mass Spectrom. , vol.12 , pp. 193-205
    • Wan, K.X.1    Gross, J.2    Hillenkamp, F.3    Gross, M.L.4
  • 30
    • 0022498663 scopus 로고
    • Fast Atom Bombardment Combined with Tandem Mass Spectrometry for the Study of Dinucleotides
    • Cerny R.L., Gross M.L., and Grotjahn L. Fast Atom Bombardment Combined with Tandem Mass Spectrometry for the Study of Dinucleotides. Anal. Biochem. 156 (1986) 424-435
    • (1986) Anal. Biochem. , vol.156 , pp. 424-435
    • Cerny, R.L.1    Gross, M.L.2    Grotjahn, L.3
  • 31
    • 33749248364 scopus 로고
    • Low-Energy Collision-Induced Dissociation of Deprotonated Dinucleotides: Determination of the Energetically Favored Dissociation Pathways and the Relative Acidities of the Nucleic Bases
    • Rogers M.T., Campbell S., Marzluff E.M., and Beauchamp J.L. Low-Energy Collision-Induced Dissociation of Deprotonated Dinucleotides: Determination of the Energetically Favored Dissociation Pathways and the Relative Acidities of the Nucleic Bases. Int. J. Mass Spectrom. Ion Processes 137 (1994) 121-149
    • (1994) Int. J. Mass Spectrom. Ion Processes , vol.137 , pp. 121-149
    • Rogers, M.T.1    Campbell, S.2    Marzluff, E.M.3    Beauchamp, J.L.4
  • 32
    • 0000677052 scopus 로고
    • Ion Trap Collisional Activation of the Deprotonated Deoxymononucleoside and Deoxydinucleoside Monophosphates
    • Habibi-Goudarzi S., and McLuckey S.A. Ion Trap Collisional Activation of the Deprotonated Deoxymononucleoside and Deoxydinucleoside Monophosphates. J. Am. Soc. Mass Spectrom. 6 (1995) 102-113
    • (1995) J. Am. Soc. Mass Spectrom. , vol.6 , pp. 102-113
    • Habibi-Goudarzi, S.1    McLuckey, S.A.2
  • 33
    • 0029025875 scopus 로고
    • Mass and Sequence Verification of Modified Oligonucleotides Using Electrospray Tandem Mass Spectrometry
    • Barry J.P., Vouros P., Van Schepdael A., and Law S.-J. Mass and Sequence Verification of Modified Oligonucleotides Using Electrospray Tandem Mass Spectrometry. J. Mass Spectrom. 30 (1995) 993-1006
    • (1995) J. Mass Spectrom. , vol.30 , pp. 993-1006
    • Barry, J.P.1    Vouros, P.2    Van Schepdael, A.3    Law, S.-J.4
  • 35
    • 45849103855 scopus 로고    scopus 로고
    • NIST Standard Reference Database. Number 69, June 2005 Release. Negative Ion Energetics Data Compiled by Bartmess, J. E. http://webbook.nist.gov/chemistry
    • NIST Standard Reference Database. Number 69, June 2005 Release. Negative Ion Energetics Data Compiled by Bartmess, J. E. http://webbook.nist.gov/chemistry
  • 37
    • 0000947381 scopus 로고
    • Trimethyl Phosphate: The Intrinsic Reactivity of Carbon versus Phosphorus Sites with Anionic Nucleophiles
    • Lum R.C., and Grabowski J.J. Trimethyl Phosphate: The Intrinsic Reactivity of Carbon versus Phosphorus Sites with Anionic Nucleophiles. J. Am. Chem. Soc. 114 (1992) 8619-8627
    • (1992) J. Am. Chem. Soc. , vol.114 , pp. 8619-8627
    • Lum, R.C.1    Grabowski, J.J.2
  • 39
    • 0000063911 scopus 로고
    • First Steps Towards an "Effective Gas-Phase Acidity" Ladder for Derivatized Fullerene Dications
    • Petrie S., Javahery G., and Bohme D.K. First Steps Towards an "Effective Gas-Phase Acidity" Ladder for Derivatized Fullerene Dications. Int. J. Mass Spectrom. Ion Processes 124 (1993) 145-456
    • (1993) Int. J. Mass Spectrom. Ion Processes , vol.124 , pp. 145-456
    • Petrie, S.1    Javahery, G.2    Bohme, D.K.3
  • 41
    • 0034582320 scopus 로고    scopus 로고
    • Mononucleotide Gas-Phase Proton Affinities Determined by the Kinetic Method
    • Green-Church K.B., and Limbach P.A. Mononucleotide Gas-Phase Proton Affinities Determined by the Kinetic Method. J. Am. Soc. Mass Spectrom. 11 (2000) 24-32
    • (2000) J. Am. Soc. Mass Spectrom. , vol.11 , pp. 24-32
    • Green-Church, K.B.1    Limbach, P.A.2
  • 42
    • 26944474415 scopus 로고    scopus 로고
    • Investigation of the Initial Fragmentation of Oligodeoxynucleotides in a Quadrupole Ion Trap: Charge Level-Related Base Loss
    • Pan S., Verhoeven K., and Lee J.K. Investigation of the Initial Fragmentation of Oligodeoxynucleotides in a Quadrupole Ion Trap: Charge Level-Related Base Loss. J. Am. Soc. Mass Spectrom. 16 (2005) 1853-1865
    • (2005) J. Am. Soc. Mass Spectrom. , vol.16 , pp. 1853-1865
    • Pan, S.1    Verhoeven, K.2    Lee, J.K.3
  • 43
    • 0031081662 scopus 로고    scopus 로고
    • Counting Basic Sites in Oligopeptides via Gas-Phase Ion Chemistry
    • Stephenson J.L., and McLuckey S.A. Counting Basic Sites in Oligopeptides via Gas-Phase Ion Chemistry. Anal. Chem. 69 (1997) 281-285
    • (1997) Anal. Chem. , vol.69 , pp. 281-285
    • Stephenson, J.L.1    McLuckey, S.A.2
  • 44
    • 0030991143 scopus 로고    scopus 로고
    • Gaseous Protein Cations are Amphoteric
    • Stephenson J.L., and McLuckey S.A. Gaseous Protein Cations are Amphoteric. J. Am. Chem. Soc. 119 (1997) 1688-1696
    • (1997) J. Am. Chem. Soc. , vol.119 , pp. 1688-1696
    • Stephenson, J.L.1    McLuckey, S.A.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.