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Volumn 153, Issue 7, 2008, Pages 1233-1240

Dynamic analysis of genetic diversity of gag and env regions of HIV-1 CRF07_BC recombinant in intravenous drug users in Xinjiang Uvghur Autonomous Region, China

Author keywords

[No Author keywords available]

Indexed keywords

GAG PROTEIN; VIRUS ENVELOPE PROTEIN; VIRUS RNA;

EID: 45849111805     PISSN: 03048608     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00705-008-0107-9     Document Type: Article
Times cited : (14)

References (58)
  • 1
    • 10244222703 scopus 로고    scopus 로고
    • Global overview of injecting drug use and HIV infection among injecting drug users
    • Aceijas C, Stimson GV, Hickman M, Rhodes T (2004) Global overview of injecting drug use and HIV infection among injecting drug users. AIDS 18:2295-2303
    • (2004) AIDS , vol.18 , pp. 2295-2303
    • Aceijas, C.1    Stimson, G.V.2    Hickman, M.3    Rhodes, T.4
  • 4
    • 0004732896 scopus 로고    scopus 로고
    • Analysis of HIV-1 env gene sequences reveals evidence for a low effective number in the viral population
    • Brown AJ (1997) Analysis of HIV-1 env gene sequences reveals evidence for a low effective number in the viral population. Proc Natl Acad Sci USA 94:1862-1865
    • (1997) Proc Natl Acad Sci USA , vol.94 , pp. 1862-1865
    • Brown, A.J.1
  • 5
    • 33144487829 scopus 로고    scopus 로고
    • Extensive recombination among human immunodeficiency virus type 1 quasispecies makes an important contribution to viral diversity in individual patients
    • Charpentier C, Nora T, Tenaillon O, Clavel F, Hance AJ (2006) Extensive recombination among human immunodeficiency virus type 1 quasispecies makes an important contribution to viral diversity in individual patients. J Virol 80:2472-2482
    • (2006) J Virol , vol.80 , pp. 2472-2482
    • Charpentier, C.1    Nora, T.2    Tenaillon, O.3    Clavel, F.4    Hance, A.J.5
  • 6
    • 0028952146 scopus 로고
    • HIV population dynamics in vivo: Implications for genetic variation, pathogenesis, and therapy
    • Coffin JM (1995) HIV population dynamics in vivo: implications for genetic variation, pathogenesis, and therapy. Science 267:483-489
    • (1995) Science , vol.267 , pp. 483-489
    • Coffin, J.M.1
  • 9
    • 0027980442 scopus 로고
    • Human immunodeficiency virus type 1 evolution in vivo tracked by DNA heteroduplex mobility assays
    • Delwart EL, Sheppard HW, Walker BD, Goudsmit J, Mullins JI (1994) Human immunodeficiency virus type 1 evolution in vivo tracked by DNA heteroduplex mobility assays. J Virol 68:6672-6683
    • (1994) J Virol , vol.68 , pp. 6672-6683
    • Delwart, E.L.1    Sheppard, H.W.2    Walker, B.D.3    Goudsmit, J.4    Mullins, J.I.5
  • 11
    • 1242274541 scopus 로고    scopus 로고
    • Unselected mutations in the human immunodeficiency virus type 1 genome are mostly nonsynonymous and often deleterious
    • Gao F, Chen Y, Levy DN, Conway JA, Kepler TB, Hui H (2004) Unselected mutations in the human immunodeficiency virus type 1 genome are mostly nonsynonymous and often deleterious. J Virol 78:2426-2433
    • (2004) J Virol , vol.78 , pp. 2426-2433
    • Gao, F.1    Chen, Y.2    Levy, D.N.3    Conway, J.A.4    Kepler, T.B.5    Hui, H.6
  • 12
    • 15844412621 scopus 로고    scopus 로고
    • Sex increases the efficacy of natural selection in experimental yeast populations
    • Goddard MR, Godfray HC, Burt A (2005) Sex increases the efficacy of natural selection in experimental yeast populations. Nature 434:636-640
    • (2005) Nature , vol.434 , pp. 636-640
    • Goddard, M.R.1    Godfray, H.C.2    Burt, A.3
  • 13
    • 0028346910 scopus 로고
    • Genetic analysis of human immunodeficiency virus type 1 and 2 (HIV-1 and HIV-2) mixed infections in India reveals a recent spread of HIV-1 and HIV-2 from a single ancestor for each of these viruses
    • Grez M, Dietrich U, Balfe P, von Briesen H, Maniar JK, Mahambre G, Delwart EL, Mullins JI, Rubsamen-Waigmann H (1994) Genetic analysis of human immunodeficiency virus type 1 and 2 (HIV-1 and HIV-2) mixed infections in India reveals a recent spread of HIV-1 and HIV-2 from a single ancestor for each of these viruses. J Virol 68:2161-2168
    • (1994) J Virol , vol.68 , pp. 2161-2168
    • Grez, M.1    Dietrich, U.2    Balfe, P.3    Von Briesen, H.4    Maniar, J.K.5    Mahambre, G.6    Delwart, E.L.7    Mullins, J.I.8    Rubsamen-Waigmann, H.9
  • 15
    • 15244353559 scopus 로고    scopus 로고
    • Wide range of quasispecies diversity during primary hepatitis C virus infection
    • Herring BL, Tsui R, Peddada L, Busch M, Delwart EL (2005) Wide range of quasispecies diversity during primary hepatitis C virus infection. J Virol 79:4340-4346
    • (2005) J Virol , vol.79 , pp. 4340-4346
    • Herring, B.L.1    Tsui, R.2    Peddada, L.3    Busch, M.4    Delwart, E.L.5
  • 18
    • 0026647419 scopus 로고
    • Convergent and divergent sequence evolution in the surface envelope glycoprotein of human immunodeficiency virus type 1 within a single infected patient
    • Holmes EC, Zhang LQ, Simmonds P, Ludlam CA, Brown AJ (1992) Convergent and divergent sequence evolution in the surface envelope glycoprotein of human immunodeficiency virus type 1 within a single infected patient. Proc Natl Acad Sci USA 89:4835-4839
    • (1992) Proc Natl Acad Sci USA , vol.89 , pp. 4835-4839
    • Holmes, E.C.1    Zhang, L.Q.2    Simmonds, P.3    Ludlam, C.A.4    Brown, A.J.5
  • 19
    • 0027175227 scopus 로고
    • Molecular investigation of human immunodeficiency virus (HIV) infection in a patient of an HIV-infected surgeon
    • Holmes EC, Zhang LQ, Simmonds P, Rogers AS, Brown AJ (1993) Molecular investigation of human immunodeficiency virus (HIV) infection in a patient of an HIV-infected surgeon. J Infect Dis 167:1411-1414
    • (1993) J Infect Dis , vol.167 , pp. 1411-1414
    • Holmes, E.C.1    Zhang, L.Q.2    Simmonds, P.3    Rogers, A.S.4    Brown, A.J.5
  • 22
    • 0036888937 scopus 로고    scopus 로고
    • Virus population homogenization following acute human immunodeficiency virus type 1 infection
    • Learn GH, Muthui D, Brodie SJ, Zhu T, Diem K, Mullins JI, Corey L (2002) Virus population homogenization following acute human immunodeficiency virus type 1 infection. J Virol 76:11953-11959
    • (2002) J Virol , vol.76 , pp. 11953-11959
    • Learn, G.H.1    Muthui, D.2    Brodie, S.J.3    Zhu, T.4    Diem, K.5    Mullins, J.I.6    Corey, L.7
  • 23
    • 0031010764 scopus 로고    scopus 로고
    • Tempo and mode of nucleotide substitutions in gag and env gene fragments in human immunodeficiency virus type 1 populations with a known transmission history
    • Leitner T, Kumar S, Albert J (1997) Tempo and mode of nucleotide substitutions in gag and env gene fragments in human immunodeficiency virus type 1 populations with a known transmission history. J Virol 71:4761-4770
    • (1997) J Virol , vol.71 , pp. 4761-4770
    • Leitner, T.1    Kumar, S.2    Albert, J.3
  • 24
    • 0027531918 scopus 로고
    • Pathogenesis of human immunodeficiency virus infection
    • Levy JA (1993) Pathogenesis of human immunodeficiency virus infection. Microbiol Rev 57:183-289
    • (1993) Microbiol Rev , vol.57 , pp. 183-289
    • Levy, J.A.1
  • 27
    • 0030947397 scopus 로고    scopus 로고
    • Divergent patterns of progression to AIDS after infection from the same source: Human immunodeficiency virus type 1 evolution and antiviral responses
    • Liu SL, Schacker T, Musey L, Shriner D, McElrath MJ, Corey L, Mullins JI (1997) Divergent patterns of progression to AIDS after infection from the same source: human immunodeficiency virus type 1 evolution and antiviral responses. J Virol 71:4284-4295
    • (1997) J Virol , vol.71 , pp. 4284-4295
    • Liu, S.L.1    Schacker, T.2    Musey, L.3    Shriner, D.4    McElrath, M.J.5    Corey, L.6    Mullins, J.I.7
  • 29
    • 0035936781 scopus 로고    scopus 로고
    • HIV-1 sequence variation: Drift, shift, and attenuation
    • Malim MH, Emerman M (2001) HIV-1 sequence variation: drift, shift, and attenuation. Cell 104:469-472
    • (2001) Cell , vol.104 , pp. 469-472
    • Malim, M.H.1    Emerman, M.2
  • 30
    • 15544380169 scopus 로고    scopus 로고
    • High mutation rates, bottlenecks, and robustness of RNA viral quasispecies
    • Manrubia SC, Escarmis C, Domingo E, Lazaro E (2005) High mutation rates, bottlenecks, and robustness of RNA viral quasispecies. Gene 347:273-282
    • (2005) Gene , vol.347 , pp. 273-282
    • Manrubia, S.C.1    Escarmis, C.2    Domingo, E.3    Lazaro, E.4
  • 31
    • 0029075130 scopus 로고
    • Lower in vivo mutation rate of human immunodeficiency virus type 1 than that predicted from the fidelity of purified reverse transcriptase
    • Mansky LM, Temin HM (1995) Lower in vivo mutation rate of human immunodeficiency virus type 1 than that predicted from the fidelity of purified reverse transcriptase. J Virol 69:5087-5094
    • (1995) J Virol , vol.69 , pp. 5087-5094
    • Mansky, L.M.1    Temin, H.M.2
  • 32
    • 0028964753 scopus 로고
    • Human immunodeficiency virus type 1 env and p17gag sequence variation in polymerase chain reaction-positive, seronegative injection drug users
    • Markham RB, Yu X, Farzadegan H, Ray SC, Vlahov D (1995) Human immunodeficiency virus type 1 env and p17gag sequence variation in polymerase chain reaction-positive, seronegative injection drug users. J Infect Dis 171:797-804
    • (1995) J Infect Dis , vol.171 , pp. 797-804
    • Markham, R.B.1    Yu, X.2    Farzadegan, H.3    Ray, S.C.4    Vlahov, D.5
  • 37
    • 0028935432 scopus 로고
    • Similarity in env and gag genes between genomic RNAs of human immunodeficiency virus type 1 (HIV-1) from mother and infant is unrelated to time of HIV-1 RNA positivity in the child
    • Mulder-Kampinga GA, Simonon A, Kuiken CL, Dekker J, Scherpbier HJ, van de Perre P, Boer K, Goudsmit J (1995) Similarity in env and gag genes between genomic RNAs of human immunodeficiency virus type 1 (HIV-1) from mother and infant is unrelated to time of HIV-1 RNA positivity in the child. J Virol 69:2285-2296
    • (1995) J Virol , vol.69 , pp. 2285-2296
    • Mulder-Kampinga, G.A.1    Simonon, A.2    Kuiken, C.L.3    Dekker, J.4    Scherpbier, H.J.5    Van De Perre, P.6    Boer, K.7    Goudsmit, J.8
  • 39
    • 0036209507 scopus 로고    scopus 로고
    • Resolving the paradox of sex and recombination
    • Otto SP, Lenormand T (2002) Resolving the paradox of sex and recombination. Nat Rev Genet 3:252-261
    • (2002) Nat Rev Genet , vol.3 , pp. 252-261
    • Otto, S.P.1    Lenormand, T.2
  • 41
    • 0029967721 scopus 로고    scopus 로고
    • HIV-1 dynamics in vivo: Virion clearance rate, infected cell life-span, and viral generation time
    • Perelson AS, Neumann AU, Markowitz M, Leonard JM, Ho DD (1996) HIV-1 dynamics in vivo: virion clearance rate, infected cell life-span, and viral generation time. Science 271:1582-1586
    • (1996) Science , vol.271 , pp. 1582-1586
    • Perelson, A.S.1    Neumann, A.U.2    Markowitz, M.3    Leonard, J.M.4    Ho, D.D.5
  • 43
    • 0034468391 scopus 로고    scopus 로고
    • A recent outbreak of human immunodeficiency virus type 1 infection in southern China was initiated by two highly homogeneous, geographically separated strains, circulating recombinant form AE and a novel BC recombinant
    • Piyasirisilp S, McCutchan FE, Carr JK, Sanders-Buell E, Liu W, Chen J, Wagner R, Wolf H, Shao Y, Lai S, Beyrer C, Yu XF (2000) A recent outbreak of human immunodeficiency virus type 1 infection in southern China was initiated by two highly homogeneous, geographically separated strains, circulating recombinant form AE and a novel BC recombinant. J Virol 74:11286-11295
    • (2000) J Virol , vol.74 , pp. 11286-11295
    • Piyasirisilp, S.1    McCutchan, F.E.2    Carr, J.K.3    Sanders-Buell, E.4    Liu, W.5    Chen, J.6    Wagner, R.7    Wolf, H.8    Shao, Y.9    Lai, S.10    Beyrer, C.11    Yu, X.F.12
  • 45
    • 0023375195 scopus 로고
    • The neighbor-joining method: A new method for reconstructing phylogenetic trees
    • Saitou N, Nei M (1987) The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4:406-425
    • (1987) Mol Biol Evol , vol.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 47
    • 34848893261 scopus 로고    scopus 로고
    • The evolution of subtype C HIV-1 and its recombinant forms among IDUs in China
    • Durban, South Africa, July 9-14
    • Shao Y XH, Pang P, et al. (2000) The evolution of subtype C HIV-1 and its recombinant forms among IDUs in China. XIII international AIDS congress167, Durban, South Africa, July 9-14
    • (2000) XIII International AIDS congress , vol.167
    • Shao, Y.X.H.1    Pang, P.2
  • 48
    • 0025253821 scopus 로고
    • Analysis of sequence diversity in hypervariable regions of the external glycoprotein of human immunodeficiency virus type 1
    • Simmonds P, Balfe P, Ludlam CA, Bishop JO, Brown AJ (1990) Analysis of sequence diversity in hypervariable regions of the external glycoprotein of human immunodeficiency virus type 1. J Virol 64:5840-5850
    • (1990) J Virol , vol.64 , pp. 5840-5850
    • Simmonds, P.1    Balfe, P.2    Ludlam, C.A.3    Bishop, J.O.4    Brown, A.J.5
  • 49
    • 0034469646 scopus 로고    scopus 로고
    • Characterization of a virtually full-length human immunodeficiency virus type 1 genome of a prevalent intersubtype (C/B') recombinant strain in China
    • Su L, Graf M, Zhang Y, von Briesen H, Xing H, Kostler J, Melzl H, Wolf H, Shao Y, Wagner R (2000) Characterization of a virtually full-length human immunodeficiency virus type 1 genome of a prevalent intersubtype (C/B') recombinant strain in China. J Virol 74:11367-11376
    • (2000) J Virol , vol.74 , pp. 11367-11376
    • Su, L.1    Graf, M.2    Zhang, Y.3    Von Briesen, H.4    Xing, H.5    Kostler, J.6    Melzl, H.7    Wolf, H.8    Shao, Y.9    Wagner, R.10
  • 50
    • 0027968068 scopus 로고
    • CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
    • Thompson JD, Higgins DG, Gibson TJ (1994) CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22:4673-4680
    • (1994) Nucleic Acids Res , vol.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 52
    • 0037295402 scopus 로고    scopus 로고
    • Probability of fixation of an advantageous mutant in a viral quasispecies
    • Wilke CO (2003) Probability of fixation of an advantageous mutant in a viral quasispecies. Genetics 163:467-474
    • (2003) Genetics , vol.163 , pp. 467-474
    • Wilke, C.O.1
  • 54
    • 39549112440 scopus 로고    scopus 로고
    • The evolution and rapid spread of B/C recombinant HIV-1 strains in western China
    • TuOrC1191, Barcelona, Spain, July 7-12
    • Xing H CZ, Liang H, et al. (2002) The evolution and rapid spread of B/C recombinant HIV-1 strains in western China. XIV international AIDS congress, TuOrC1191, Barcelona, Spain, July 7-12
    • (2002) XIV International AIDS Congress
    • Xing, H.C.Z.1    Liang, H.2
  • 56
    • 0027229245 scopus 로고
    • Selection for specific sequences in the external envelope protein of human immunodeficiency virus type 1 upon primary infection
    • Zhang LQ, MacKenzie P, Cleland A, Holmes EC, Brown AJ, Simmonds P (1993) Selection for specific sequences in the external envelope protein of human immunodeficiency virus type 1 upon primary infection. J Virol 67:3345-3356
    • (1993) J Virol , vol.67 , pp. 3345-3356
    • Zhang, L.Q.1    MacKenzie, P.2    Cleland, A.3    Holmes, E.C.4    Brown, A.J.5    Simmonds, P.6
  • 58
    • 0027422278 scopus 로고
    • Genotypic and phenotypic characterization of HIV-1 patients with primary infection
    • Zhu T, Mo H, Wang N, Nam DS, Cao Y, Koup RA, Ho DD (1993) Genotypic and phenotypic characterization of HIV-1 patients with primary infection. Science 261:1179-1181
    • (1993) Science , vol.261 , pp. 1179-1181
    • Zhu, T.1    Mo, H.2    Wang, N.3    Nam, D.S.4    Cao, Y.5    Koup, R.A.6    Ho, D.D.7


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.