Automated 3D phenotype analysis using data mining

PLoS ONE

Volumn 3, Issue 3, 2008, Pages

  Plyusnin, Ilya ^a   Evans, Alistair R ^a   Karme, Aleksis ^b   Gionis, Aristides ^c   Jernvall, Jukka ^a  

^a UNIVERSITY OF HELSINKI   (Finland)

^b UNIVERSITY OF HELSINKI   (Finland)

^c YAHOO RESEARCH   (Spain)

Author keywords

[No Author keywords available]

Indexed keywords

ACCURACY; ARTICLE; AUTOMATION; CLASSIFICATION; CONTROLLED STUDY; DATA MINING; DIETARY INTAKE; GENOTYPE PHENOTYPE CORRELATION; GEOGRAPHIC INFORMATION SYSTEM; INTERMETHOD COMPARISON; K NEAREST NEIGHBOR; MAMMAL; MATHEMATICAL COMPUTING; MORPHOLOGY; NONHUMAN; PHENOTYPIC VARIATION; SEQUENCE ANALYSIS; THREE DIMENSIONAL IMAGING; TOOTH; ALGORITHM; AUTOMATED PATTERN RECOGNITION; BIOLOGY; COMPUTER SIMULATION; DATA BASE; DIET; HISTOLOGY; INFORMATION PROCESSING; PHENOTYPE; PHYSIOLOGY;

MAMMALIA;

ALGORITHMS; AUTOMATIC DATA PROCESSING; COMPUTATIONAL BIOLOGY; COMPUTER SIMULATION; DATABASE MANAGEMENT SYSTEMS; DIET; PATTERN RECOGNITION, AUTOMATED; PHENOTYPE; TOOTH;

EID: 45849091540     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0001742     Document Type: Article

References (32)

1. Funkhouser T, Kazhdan M, Min P, Shilane P (2005) Shape-based retrieval and analysis of 3D models. Communications of the ACM 48: 58-64.
2. Levoy M, Pulli K, Curless B, Rusinkiewicz S, Koller D, et al. (2000) The Digital Michelangelo Project: 3D scanning of large statues. Proc Siggraph 2000: 131-144.
3. Regli WC, Cicirello VA (2000) Managing digital libraries for computer-aided design. Computer-Aided Design 32: 119-132.
4. Berman HM, Westbrook J, Feng Z, Gilliland G, Bhat TN, et al. (2000) The Protein Data Bank. Nucleic Acids Research 28: 235-242.
5. Tangelder JWH, Veltkamp RC (2004) A survey of content based 3D shape retrieval methods. Proc Shape Modeling International 2004: 145-156.
6. Kay RF (1975) The functional adaptations of primate molar teeth. Am J Phys Anthropol 43: 195-215.
7. Butler PM (1983) Evolution and mammalian dental morphology. Journal De Biologie Buccale 11: 285-302.
8. Lucas PW (2004) Dental Functional Morphology. Cambridge: Cambridge University Press.
9. Jernvall J, Hunter JP, Fortelius M (1996) Molar tooth diversity, disparity, and ecology in Cenozoic ungulate radiations. Science 274: 1489-1492.
10. Hillson S (2005) Teeth. Cambridge: Cambridge University Press.
11. Osborn HF (1907) Evolution of mammalian teeth, to and from the triangular type. New York: Macmillan.
12. Kay HF (1985) Dental evidence for the diet of Australopithecus. Ann Rev Anthropol 14: 315-341.
13. Strait SG (1993) Molar morphology and food texture among small-bodied insectivorous mammals. J Mammal 74: 391-402.
14. Adams DC, Rohlf FJ, Slice DE (2002) Geometric morphometrics: ten years of progress following the 'revolution'. Ital J Zool 71: 5-16.
15. Evans AR, Harper IS, Sanson GD (2001) Confocal imaging, visualization and 3-D surface measurement of small mammalian teeth. J Microsc 204: 108-118.
16. Jernvall J, Selänne L (1999) Laser confocal microscopy and geographic information systems in the study of dental morphology. Palaeontologia Electronica 2.
17. Reed DNO (1997) Contour mapping as a new method for interpreting diet from tooth morphology, Am J Plays Anthropol Suppl 24: 113-124.
18. Zuccotti LF, Williamson MD, Limp WF, Ungar PS (1998) Modeling primate occlusal topography using geographic information systems technology. Am J Phys Anthropol 107: 137-142.
19. Evans AR, Wilson GP, Fortelius M, Jernvall J (2007) High-level similarity of dentitions in carnivorans and rodents. Nature 445: 78-81.
20. Ungar P (2004) Dental topography and diets of Australopithecus afarensis and early Homo. J Human Evol 46: 605-622.
21. Hand D, Mannila H, Smyth P (2001) Principles of Data Mining. Cambridge: MIT Press.
22. Strait S, Smith N (2006). PaleoView3D: an interactive database of mammals from the Paleocene/Eocene boundary. J Vert Paleontol 26: 129A.
23. Evans G, Fortelius M, Jernvall J, Pljusnin I, Evans A (2006) Shape-searching in dental morphology using the MorphoBrowser. J Vert Paleontol 26: 59A.
24. Evans G, Evans AR, Pljusnin I, Fortelius M, Jernvall J (2005) MorphoBrowser - a new database for surfing the dental morphospace. Integrative and Comparative Biology 45: 1129-1129.
25. Nowak MR (1999) Walker's Mammals of the World. Baltimore: Johns Hopkins University Press.
26. Osada R, Funkhouser T, Chazelle, B, Dobkin D (2002) Shape distributions. ACM Transactions on Graphics 21: 807-832.
27. Witten IH, Frank E (2005) Data Mining: Practical machine learning tools and San Francisco: Morgan Kaufmann.
28. John HG, Langley P (1995) Estimating Continuous Distributions in Bayesian Classifiers. In:.Eleventh Conference on Uncertainty in Artificial Intelligence. San Mateo: Morgan Kaufmann. pp 338-345.
29. Aha DW, Kibler D, Albert MK (1991) Instance-based learning algorithms Machine Learning 6: 37-66.
30. Quinlam R (1993) C4.5: Programs for Machine Learning. San Mateo: Morgan Kaufmann.
31. Raup DM (1966) Geometric analysis of shell coiling: general problems. J Paleontol 40: 1178-1190.
32. Salazar-Ciudad I, Jernvall J (2004) How different types of pattern formation mechanism affect the evolution of form and development. Evolution and Development 6: 6-16.