-
1
-
-
0038102259
-
Sequence-Based Cancer Genomics: Progress, Lessons and Opportunities
-
10.1038/nrg1085 12776211
-
Strausberg RL Simpson AJG Wooster R Sequence-Based Cancer Genomics: Progress, Lessons and Opportunities Nature Reviews Genetics 2003, 4(6):409-418. 10.1038/nrg1085 12776211
-
(2003)
Nature Reviews Genetics
, vol.4
, Issue.6
, pp. 409-418
-
-
Strausberg, R.L.1
Simpson, A.J.G.2
Wooster, R.3
-
2
-
-
10744230697
-
A Pilot Study of High-Throughput, Sequence-Based Mutational Profiling of Primary Human Acute Myeloid Leukemia Cell Genomes
-
10.1073/pnas.2335924100
-
Ley TJ Minx PJ Walter MJ Ries RE Sun H McLellan M DiPersio JF Link DC Tomasson MH Graubert TA McLeod H Khoury H Watson M Shannon W Trinkaus K Heath S Vardiman JW Caligiuri MA Bloomfield CD Milbrandt JD Mardis ER Wilson RK A Pilot Study of High-Throughput, Sequence-Based Mutational Profiling of Primary Human Acute Myeloid Leukemia Cell Genomes Proceedings of the National Academy of Sciences 2003, 100(24):14275-14280. 10.1073/pnas.2335924100
-
(2003)
Proceedings of the National Academy of Sciences
, vol.100
, Issue.24
, pp. 14275-14280
-
-
Ley, T.J.1
Minx, P.J.2
Walter, M.J.3
Ries, R.E.4
Sun, H.5
McLellan, M.6
DiPersio, J.F.7
Link, D.C.8
Tomasson, M.H.9
Graubert, T.A.10
McLeod, H.11
Khoury, H.12
Watson, M.13
Shannon, W.14
Trinkaus, K.15
Heath, S.16
Vardiman, J.W.17
Caligiuri, M.A.18
Bloomfield, C.D.19
Milbrandt, J.D.20
Mardis, E.R.21
Wilson, R.K.22
more..
-
3
-
-
3242696821
-
Mutational Profiling in the Human Genome
-
10.1101/sqb.2003.68.23 15338599
-
Wilson RK Ley TJ Cole FS Milbrandt JD Clifton S Fulton L Fewell G Minx P Sun H McLellan M Pohl C Mardis ER Mutational Profiling in the Human Genome Cold Spring Harbor Symposia on Quantitative Biology 2003, 68:23-29. 10.1101/sqb.2003.68.23 15338599
-
(2003)
Cold Spring Harbor Symposia on Quantitative Biology
, vol.68
, pp. 23-29
-
-
Wilson, R.K.1
Ley, T.J.2
Cole, F.S.3
Milbrandt, J.D.4
Clifton, S.5
Fulton, L.6
Fewell, G.7
Minx, P.8
Sun, H.9
McLellan, M.10
Pohl, C.11
Mardis, E.R.12
-
4
-
-
26444481568
-
Sequence Survey of Receptor Tyrosine Kinases Reveals Mutations in Glioblastomas
-
10.1073/pnas.0507200102
-
Rand V Huang J Stockwell T Ferriera S Buzko O Levy S Busam D Li K Edwards JB Eberhart C Murphy KM Tsiamouri A Beeson K Simpson AJG Venter JC Riggins GJ Strausberg RL Sequence Survey of Receptor Tyrosine Kinases Reveals Mutations in Glioblastomas Proceedings of the National Academy of Sciences 2005, 102(40):14344-14349. 10.1073/pnas.0507200102
-
(2005)
Proceedings of the National Academy of Sciences
, vol.102
, Issue.40
, pp. 14344-14349
-
-
Rand, V.1
Huang, J.2
Stockwell, T.3
Ferriera, S.4
Buzko, O.5
Levy, S.6
Busam, D.7
Li, K.8
Edwards, J.B.9
Eberhart, C.10
Murphy, K.M.11
Tsiamouri, A.12
Beeson, K.13
Simpson, A.J.G.14
Venter, J.C.15
Riggins, G.J.16
Strausberg, R.L.17
-
5
-
-
33745170363
-
High-Throughput Mutational Analysis of the Human Cancer Genome
-
10.2217/14622416.7.4.597 16753007
-
Ma PC Zhang X Wang ZJ High-Throughput Mutational Analysis of the Human Cancer Genome Pharmacogenomics 2006, 7(4):597-612. 10.2217/ 14622416.7.4.597 16753007
-
(2006)
Pharmacogenomics
, vol.7
, Issue.4
, pp. 597-612
-
-
Ma, P.C.1
Zhang, X.2
Wang, Z.J.3
-
6
-
-
33749993417
-
The Consensus Coding Sequences of Human Breast and Colorectal Cancers
-
10.1126/science.1133427 16959974
-
Sjöblom T Jones S Wood LD Parsons DW Lin J Barber TD Mandelker D Leary RJ Ptak J Silliman N Szabo S Buckhaults P Farrell C Meeh P Markowitz SD Willis J Dawson D Willson JKV Gazdar AF Hartigan J Wu L Liu CS Parmigiani G Park BH Bachman KE Papadopoulos N Vogelstein B Kinzler KW Velculescu VE The Consensus Coding Sequences of Human Breast and Colorectal Cancers Science 2006, 314(5797):268-274. 10.1126/ science.1133427 16959974
-
(2006)
Science
, vol.314
, Issue.5797
, pp. 268-274
-
-
Sjöblom, T.1
Jones, S.2
Wood, L.D.3
Parsons, D.W.4
Lin, J.5
Barber, T.D.6
Mandelker, D.7
Leary, R.J.8
Ptak, J.9
Silliman, N.10
Szabo, S.11
Buckhaults, P.12
Farrell, C.13
Meeh, P.14
Markowitz, S.D.15
Willis, J.16
Dawson, D.17
Willson, J.K.V.18
Gazdar, A.F.19
Hartigan, J.20
Wu, L.21
Liu, C.S.22
Parmigiani, G.23
Park, B.H.24
Bachman, K.E.25
Papadopoulos, N.26
Vogelstein, B.27
Kinzler, K.W.28
Velculescu, V.E.29
more..
-
7
-
-
27944437078
-
The Search for a Sequencing Thoroughbred
-
10.1038/nbt1105-1333 16273050
-
Kling J The Search for a Sequencing Thoroughbred Nature Biotechnology 2005, 23(11):1333-1335. 10.1038/nbt1105-1333 16273050
-
(2005)
Nature Biotechnology
, vol.23
, Issue.11
, pp. 1333-1335
-
-
Kling, J.1
-
8
-
-
39649117755
-
The Impact of Next-Generation Sequencing Technology on Genetics
-
18262675
-
Mardis ER The Impact of Next-Generation Sequencing Technology on Genetics Trends in Genetics 2008, 24(3):133-141. 18262675
-
(2008)
Trends in Genetics
, vol.24
, Issue.3
, pp. 133-141
-
-
Mardis, E.R.1
-
9
-
-
33645072440
-
The Race for the $ 1000 Genome
-
10.1126/science.311.5767.1544 16543431
-
Service RF The Race for the $ 1000 Genome Science 2006, 311(5767):1544-1546. 10.1126/science.311.5767.1544 16543431
-
(2006)
Science
, vol.311
, Issue.5767
, pp. 1544-1546
-
-
Service, R.F.1
-
10
-
-
33750953227
-
Whole-Genome Re-Sequencing
-
10.1016/j.gde.2006.10.009 17055251
-
Bentley DR Whole-Genome Re-Sequencing Current Opinion in Genetics & Development 2006, 16(6):545-552. 10.1016/j.gde.2006.10.009 17055251
-
(2006)
Current Opinion in Genetics & Development
, vol.16
, Issue.6
, pp. 545-552
-
-
Bentley, D.R.1
-
11
-
-
34447118976
-
Faster Still and Faster
-
10.1038/448010b 17611510
-
Check E Faster Still and Faster Nature 2007, 448(7149):10-11. 10.1038/ 448010b 17611510
-
(2007)
Nature
, vol.448
, Issue.7149
, pp. 10-11
-
-
Check, E.1
-
12
-
-
35648976118
-
The Diploid Genome Sequence of an Individual Human
-
article no. e254 10.1371/journal.pbio.0050254
-
Levy S Sutton G Ng PC Feuk L Halpern AL Walenz BP Axelrod N Huang J Kirkness EF Denisov G Lin Y MacDonald JR Pang AWC Shago M Stockwell TB Tsiamouri A Bafna V Bansal V Kravitz SA Busam DA Beeson KY McIntosh TC Remington KA Abril JF Gill J Borman J Rogers YH Frazier ME Scherer SW Strausberg RL Venter JC The Diploid Genome Sequence of an Individual Human PLoS Biology 2007, 5:10. article no. e254 10.1371/ journal.pbio.0050254
-
(2007)
PLoS Biology
, vol.5
, Issue.10
-
-
Levy, S.1
Sutton, G.2
Ng, P.C.3
Feuk, L.4
Halpern, A.L.5
Walenz, B.P.6
Axelrod, N.7
Huang, J.8
Kirkness, E.F.9
Denisov, G.10
Lin, Y.11
MacDonald, J.R.12
Pang, A.W.C.13
Shago, M.14
Stockwell, T.B.15
Tsiamouri, A.16
Bafna, V.17
Bansal, V.18
Kravitz, S.A.19
Busam, D.A.20
Beeson, K.Y.21
McIntosh, T.C.22
Remington, K.A.23
Abril, J.F.24
Gill, J.25
Borman, J.26
Rogers, Y.H.27
Frazier, M.E.28
Scherer, S.W.29
Strausberg, R.L.30
Venter, J.C.31
more..
-
13
-
-
42249087308
-
The Complete Genome of an Individual by Massively Parallel DNA Sequencing
-
10.1038/nature06884 18421352
-
Wheeler DA Srinivasan M Egholm M Shen Y Chen L McGuire A He W Chen YJ Makhijani V Roth GT Gomes X Tartaro K Niazi F Turcotte CL Irzyk GP Lupski JR Chinault C Song XZ Liu Y Yuan Y Nazareth L Qin X Muzny DM Margulies M Weinstock GM Gibbs RA Rothberg JM The Complete Genome of an Individual by Massively Parallel DNA Sequencing Nature 2008, 452(7189):872-876. 10.1038/nature06884 18421352
-
(2008)
Nature
, vol.452
, Issue.7189
, pp. 872-876
-
-
Wheeler, D.A.1
Srinivasan, M.2
Egholm, M.3
Shen, Y.4
Chen, L.5
McGuire, A.6
He, W.7
Chen, Y.J.8
Makhijani, V.9
Roth, G.T.10
Gomes, X.11
Tartaro, K.12
Niazi, F.13
Turcotte, C.L.14
Irzyk, G.P.15
Lupski, J.R.16
Chinault, C.17
Song, X.Z.18
Liu, Y.19
Yuan, Y.20
Nazareth, L.21
Qin, X.22
Muzny, D.M.23
Margulies, M.24
Weinstock, G.M.25
Gibbs, R.A.26
Rothberg, J.M.27
more..
-
14
-
-
2042437650
-
Initial Sequencing and Analysis of the Human Genome
-
International Human Genome Sequencing Consortium 10.1038/35057062 11237011
-
International Human Genome Sequencing Consortium Initial Sequencing and Analysis of the Human Genome Nature 2001, 409(6822):860-921. 10.1038/ 35057062 11237011
-
(2001)
Nature
, vol.409
, Issue.6822
, pp. 860-921
-
-
-
15
-
-
0003065632
-
On the Measure of a Random Set
-
10.1214/aoms/1177731315
-
Robbins HE On the Measure of a Random Set Annals of Mathematical Statistics 1944, 15(1):70-74. 10.1214/aoms/1177731315
-
(1944)
Annals of Mathematical Statistics
, vol.15
, Issue.1
, pp. 70-74
-
-
Robbins, H.E.1
-
16
-
-
0017085802
-
A Colony Bank Containing Synthetic Col El Hybrid Plasmids Representative of the Entire E. coli Genome
-
10.1016/0092-8674(76)90055-6 788919
-
Clarke L Carbon J A Colony Bank Containing Synthetic Col El Hybrid Plasmids Representative of the Entire E. coli Genome Cell 1976, 9(1):91-99. 10.1016/0092-8674(76)90055-6 788919
-
(1976)
Cell
, vol.9
, Issue.1
, pp. 91-99
-
-
Clarke, L.1
Carbon, J.2
-
17
-
-
0023988195
-
Genomic Mapping by Fingerprinting Random Clones: A Mathematical Analysis
-
10.1016/0888-7543(88)90007-9 3294162
-
Lander ES Waterman MS Genomic Mapping by Fingerprinting Random Clones: A Mathematical Analysis Genomics 1988, 2(3):231-239. 10.1016/ 0888-7543(88)90007-9 3294162
-
(1988)
Genomics
, vol.2
, Issue.3
, pp. 231-239
-
-
Lander, E.S.1
Waterman, M.S.2
-
18
-
-
45749151246
-
Multiple Coverage of the Line
-
10.1214/aop/1176994951
-
Glaz J Naus J Multiple Coverage of the Line Annals of Probability 1979, 7(5):900-906. 10.1214/aop/1176994951
-
(1979)
Annals of Probability
, vol.7
, Issue.5
, pp. 900-906
-
-
Glaz, J.1
Naus, J.2
-
19
-
-
0040849194
-
On Multiple Covering of a Circle with Random Arcs
-
10.2307/3212948
-
Holst L On Multiple Covering of a Circle with Random Arcs Journal of Applied Probability 1980, 17(1):284-290. 10.2307/3212948
-
(1980)
Journal of Applied Probability
, vol.17
, Issue.1
, pp. 284-290
-
-
Holst, L.1
-
22
-
-
33847307402
-
Assembling Millions of Short DNA Sequences Using SSAKE
-
10.1093/bioinformatics/btl629 17158514
-
Warren RL Sutton GG Jones SJM Holt RA Assembling Millions of Short DNA Sequences Using SSAKE Bioinformatics 2007, 23(4):500-501. 10.1093/ bioinformatics/btl629 17158514
-
(2007)
Bioinformatics
, vol.23
, Issue.4
, pp. 500-501
-
-
Warren, R.L.1
Sutton, G.G.2
Jones, S.J.M.3
Holt, R.A.4
-
23
-
-
0036907035
-
Generalized Gap Model for Bacterial Artificial Chromosome Clone Fingerprint Mapping and Shotgun Sequencing
-
187573 12466299 10.1101/gr.655102
-
Wendl MC Waterston RH Generalized Gap Model for Bacterial Artificial Chromosome Clone Fingerprint Mapping and Shotgun Sequencing Genome Research 2002, 12(12):1943-1949. 187573 12466299 10.1101/gr.655102
-
(2002)
Genome Research
, vol.12
, Issue.12
, pp. 1943-1949
-
-
Wendl, M.C.1
Waterston, R.H.2
-
24
-
-
33746590339
-
Occupancy Modeling of Coverage Distribution for Whole Genome Shotgun DNA Sequencing
-
10.1007/s11538-005-9021-4 16794926
-
Wendl MC Occupancy Modeling of Coverage Distribution for Whole Genome Shotgun DNA Sequencing Bulletin of Mathematical Biology 2006, 68(1):179-196. 10.1007/s11538-005-9021-4 16794926
-
(2006)
Bulletin of Mathematical Biology
, vol.68
, Issue.1
, pp. 179-196
-
-
Wendl, M.C.1
-
25
-
-
0028295681
-
2.2 Mb of Contiguous Nucleotide Sequence from Chromosome III of C. elegans
-
10.1038/368032a0 7906398
-
Wilson R Ainscough R Anderson K Baynes C Berks M Burton J Connell M Bonfield J Copsey T Cooper J Coulson A Craxton M Dear S Du Z Durbin R Favello A Fraser A Fulton L Gardner A Green P Hawkins T Hillier L Jier M Johnston L Jones M Kershaw J Kirsten J Laisster N Latreille P Lloyd C Mortimore B Ocallaghan M Parsons J Percy C Rifken L Roopra A Saunders D Shownkeen R Sims M Smaldon N Smith A Smith M Sonnhammer E Staden R Sulston J Thierry-Mieg J Thomas K Vaudin M Vaughan K Waterston R Watson A Weinstock L Wilkinson-Sproat J Wohldman P 2.2 Mb of Contiguous Nucleotide Sequence from Chromosome III of C. elegans Nature 1994, 368(6466):32-38. 10.1038/368032a0 7906398
-
(1994)
Nature
, vol.368
, pp. 32-38
-
-
Wilson, R.1
Ainscough, R.2
Anderson, K.3
Baynes, C.4
Berks, M.5
Burton, J.6
Connell, M.7
Bonfield, J.8
Copsey, T.9
Cooper, J.10
Coulson, A.11
Craxton, M.12
Dear, S.13
Du, Z.14
Durbin, R.15
Favello, A.16
Fraser, A.17
Fulton, L.18
Gardner, A.19
Green, P.20
Hawkins, T.21
Hillier, L.22
Jier, M.23
Johnston, L.24
Jones, M.25
Kershaw, J.26
Kirsten, J.27
Laisster, N.28
Latreille, P.29
Lloyd, C.30
Mortimore, B.31
Ocallaghan, M.32
Parsons, J.33
Percy, C.34
Rifken, L.35
Roopra, A.36
Saunders, D.37
Shownkeen, R.38
Sims, M.39
Smaldon, N.40
Smith, A.41
Smith, M.42
Sonnhammer, E.43
Staden, R.44
Sulston, J.45
Thierry-Mieg, J.46
Thomas, K.47
Vaudin, M.48
Vaughan, K.49
Waterston, R.50
Watson, A.51
Weinstock, L.52
Wilkinson-Sproat, J.53
Wohldman, P.54
more..
-
27
-
-
0021316934
-
Extra-Poisson Variation in Log-Linear Models
-
10.2307/2347661
-
Breslow NE Extra-Poisson Variation in Log-Linear Models Applied Statistics 1984, 33(1):38-44. 10.2307/2347661
-
(1984)
Applied Statistics
, vol.33
, Issue.1
, pp. 38-44
-
-
Breslow, N.E.1
-
28
-
-
38749149152
-
Whole-Genome Sequencing and Variant Discovery in C. elegans
-
10.1038/nmeth.1179 18204455
-
Hillier LW Marth GT Quinlan AR Dooling D Fewell G Barnett D Fox P Glasscock JI Hickenbotham M Huang W Magrini VJ Richt RJ Sander SN Stewart DA Stromberg M Tsung EF Wylie T Schedl T Wilson RK Mardis ER Whole-Genome Sequencing and Variant Discovery in C. elegans Nature Methods 2008, 9(2):183-188. 10.1038/nmeth.1179 18204455
-
(2008)
Nature Methods
, vol.5
, Issue.2
, pp. 183-188
-
-
Hillier, L.W.1
Marth, G.T.2
Quinlan, A.R.3
Dooling, D.4
Fewell, G.5
Barnett, D.6
Fox, P.7
Glasscock, J.I.8
Hickenbotham, M.9
Huang, W.10
Magrini, V.J.11
Richt, R.J.12
Sander, S.N.13
Stewart, D.A.14
Stromberg, M.15
Tsung, E.F.16
Wylie, T.17
Schedl, T.18
Wilson, R.K.19
Mardis, E.R.20
more..
-
29
-
-
27644520539
-
Extension of Lander-Waterman Theory for Sequencing Filtered DNA Libraries
-
article no. 245 10.1186/1471-2105-6-245
-
Wendl MC Barbazuk WB Extension of Lander-Waterman Theory for Sequencing Filtered DNA Libraries BMC Bioinformatics 2005, 6: Article no. 245. 10.1186/1471-2105-6-245
-
(2005)
BMC Bioinformatics
, vol.6
, Issue.245
-
-
Wendl, M.C.1
Barbazuk, W.B.2
-
31
-
-
33749242769
-
A General Coverage Theory for Shotgun DNA Sequencing
-
10.1089/cmb.2006.13.1177 16901236
-
Wendl MC A General Coverage Theory for Shotgun DNA Sequencing Journal of Computational Biology 2006, 13(6):1177-1196. 10.1089/cmb.2006.13.1177 16901236
-
(2006)
Journal of Computational Biology
, vol.13
, Issue.6
, pp. 1177-1196
-
-
Wendl, M.C.1
-
32
-
-
0031890840
-
Origin and Mechanisms of Non-Disjunction in Human Autosomal Trisomies
-
10.1093/humrep/13.2.313 9557829
-
Nicolaidis P Petersen MB Origin and Mechanisms of Non-Disjunction in Human Autosomal Trisomies Human Reproduction 1998, 13(2):313-319. 10.1093/humrep/13.2.313 9557829
-
(1998)
Human Reproduction
, vol.13
, Issue.2
, pp. 313-319
-
-
Nicolaidis, P.1
Petersen, M.B.2
-
33
-
-
0033516619
-
Rare Sex Chromosome Aneuploidies in Humans: Report of Six Patients with 48, XXYY, 49, XXXXY, and 48, XXXX Karyotypes
-
10.1002/(SICI)1096-8628(19990702)85:1<86::AID-AJMG16>3.0.CO;2-M 10377019
-
Cammarata M DiSimone P Graziano L Giuffrè M Corsello G Garofalo G Rare Sex Chromosome Aneuploidies in Humans: Report of Six Patients with 48, XXYY, 49, XXXXY, and 48, XXXX Karyotypes American Journal of Medical Genetics 1999, 85(1):86- 87. 10.1002/ (SICI)1096-8628(19990702)85:1<86::AID-AJMG16>3.0.CO;2-M 10377019
-
(1999)
American Journal of Medical Genetics
, vol.85
, Issue.1
, pp. 86-87
-
-
Cammarata, M.1
DiSimone, P.2
Graziano, L.3
Giuffrè, M.4
Corsello, G.5
Garofalo, G.6
-
34
-
-
0035970039
-
Expression Profiling Reveals Fundamental Biological Differences in Acute Myeloid Leukemia with Isolated Trisomy 8 and Normal Cytogenetics
-
10.1073/pnas.98.3.1124
-
Virtaneva K Wright FA Tanner SM Yuan B Lemon WJ Caligiuri MA Bloomfield CD de la Chapelle A Krahe R Expression Profiling Reveals Fundamental Biological Differences in Acute Myeloid Leukemia with Isolated Trisomy 8 and Normal Cytogenetics Proceedings of the National Academy of Sciences 2001, 98(3):1124-1129. 10.1073/pnas.98.3.1124
-
(2001)
Proceedings of the National Academy of Sciences
, vol.98
, Issue.3
, pp. 1124-1129
-
-
Virtaneva, K.1
Wright, F.A.2
Tanner, S.M.3
Yuan, B.4
Lemon, W.J.5
Caligiuri, M.A.6
Bloomfield, C.D.7
de la Chapelle, A.8
Krahe, R.9
-
35
-
-
28544440749
-
An Analysis of the Feasibility of Short Read Sequencing
-
article no. e171 10.1093/nar/gni170
-
Whiteford N Haslam N Weber G Prügel-Bennett A Essex JW Roach PL Bradley M Neylon C An Analysis of the Feasibility of Short Read Sequencing Nucleic Acids Research 2005, 33:19. article no. e171 10.1093/ nar/gni170
-
(2005)
Nucleic Acids Research
, vol.33
-
-
Whiteford, N.1
Haslam, N.2
Weber, G.3
Prügel-Bennett, A.4
Essex, J.W.5
Roach, P.L.6
Bradley, M.7
Neylon, C.8
-
36
-
-
34248170222
-
PolyScan: An Automatic Indel and SNP Detection Approach to the Analysis of Human Resequencing Data
-
1855178 17416743 10.1101/gr.6151507
-
Chen K McLellan MD Ding L Wendl MC Kasai Y Wilson RK Mardis ER PolyScan: An Automatic Indel and SNP Detection Approach to the Analysis of Human Resequencing Data Genome Research 2007, 17(5):659-666. 1855178 17416743 10.1101/gr.6151507
-
(2007)
Genome Research
, vol.17
, Issue.5
, pp. 659-666
-
-
Chen, K.1
McLellan, M.D.2
Ding, L.3
Wendl, M.C.4
Kasai, Y.5
Wilson, R.K.6
Mardis, E.R.7
-
38
-
-
0032509302
-
Genome Sequence of the Nematode C. elegans: A Platform for Investigating Biology
-
C elegans Sequencing Consortium 2018 10.1126/science.282.5396.2012 9851916
-
C elegans Sequencing Consortium Genome Sequence of the Nematode C. elegans: A Platform for Investigating Biology Science 1998, 282(5396):2012-2018. 10.1126/science.282.5396.2012 9851916
-
(1998)
Science
, vol.282
, pp. 2012-2018
-
-
|