Simulation methods in systems biology

Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics)

Volumn 5016 LNCS, Issue , 2008, Pages 125-167

  Gillespie, Daniel T ^a  

^a Dan T Gillespie Consulting   (United States)

Author keywords

Enzyme substrate reaction; Fokker Planck equation; Langevin equation; Master equation; Michaelis Menten; Multiscale; Slow scale stochastic simulation algorithm; Stiff systems; Stochastic chemical kinetics; Stochastic simulation algorithm; Tau leaping

Indexed keywords

ADDITION REACTIONS; ALGORITHMS; ARCHITECTURAL DESIGN; BOOLEAN FUNCTIONS; CHEMICAL ELEMENTS; COMMUNICATION SYSTEMS; COMPUTATIONAL METHODS; COMPUTER NETWORKS; COMPUTERS; EVOLUTIONARY ALGORITHMS; FOKKER PLANCK EQUATION; FOOD ADDITIVES; FORMAL METHODS; NUMERICAL METHODS; PIGMENTS; RATE CONSTANTS; REACTION KINETICS; REACTION RATES; SCHEDULING ALGORITHMS; SET THEORY; SOFTWARE DESIGN; STOCHASTIC CONTROL SYSTEMS; STOCHASTIC PROGRAMMING; SYSTEMS ENGINEERING;

(E ,2E) THEORY; APPROXIMATE SIMULATION; CELLULAR SYSTEMS; CHEMICAL KINETICS; CHEMICAL LANGEVIN EQUATION (CLE); CHEMICAL MASTER EQUATION (CME); COMPUTATIONAL SYSTEMS BIOLOGY; FOKKER PLANCK EQUATION (FPE); HEIDELBERG (CO); INTERNATIONAL (CO); LOGICAL CONNECTIONS; MAJOR ELEMENTS; MICHAELIS-MENTEN; MULTI SCALING; RATE EQUATIONS; SIMULATION EFFICIENCY; SIMULATION METHODS; SOFTWARE SYSTEMS; SPRINGER (CO); STOCHASTIC SIMULATIONS; SYSTEMS BIOLOGY; WIDE-RANGE;

COMPUTER SOFTWARE;

EID: 45749115012     PISSN: 03029743     EISSN: 16113349     Source Type: Book Series    
DOI: 10.1007/978-3-540-68894-5_5     Document Type: Conference Paper

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