Accelerated stochastic simulation of the stiff enzyme-substrate reaction

Journal of Chemical Physics

Volumn 123, Issue 14, 2005, Pages

  Cao, Yang ^a   Gillespie, Daniel T ^b   Petzold, Linda R ^a  

^a University of California   (United States)

^b Dan T Gillespie Consulting   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

CELLULAR CHEMICAL SYSTEMS; ENZYME-SUBSTRATE COMPLEX; REACTION MOTIF; STOCHASTIC SIMULATION ALGORITHMS (SSA);

ALGORITHMS; CATALYSIS; CHEMICAL REACTIONS; SIMULATION; STOCHASTIC CONTROL SYSTEMS;

ENZYMES;

ENZYME;

ALGORITHM; ARTICLE; COMPUTER SIMULATION; ENZYME SPECIFICITY; METABOLISM; STATISTICS; THEORETICAL MODEL;

ALGORITHMS; COMPUTER SIMULATION; ENZYMES; MODELS, THEORETICAL; STOCHASTIC PROCESSES; SUBSTRATE SPECIFICITY;

EID: 33846185710     PISSN: 00219606     EISSN: None     Source Type: Journal    
DOI: 10.1063/1.2052596     Document Type: Article

References (12)

1. D. T. Gillespie, J. Comput. Phys. 0021-9991 10.1016/0021-9991(76)90041-3 22, 403 (1976); D. T. Gillespie, J. Phys. Chem. 0022-3654 10.1021/j100540a008 81, 2340 (1977); D. T. Gillespie, Physica A 188, 404 (1992).
2. D. T. Gillespie, J. Comput. Phys. 0021-9991 10.1016/0021-9991(76)90041-3 22, 403 (1976); D. T. Gillespie, J. Phys. Chem. 0022-3654 10.1021/j100540a008 81, 2340 (1977); D. T. Gillespie, Physica A 188, 404 (1992).
3. D. T. Gillespie, J. Comput. Phys. 0021-9991 10.1016/0021-9991(76)90041-3 22, 403 (1976); D. T. Gillespie, J. Phys. Chem. 0022-3654 10.1021/j100540a008 81, 2340 (1977); D. T. Gillespie, Physica A 188, 404 (1992).
4. Y. Cao, D. T. Gillespie, and L. R. Petzold, J. Chem. Phys. 122, 014116 (2005).
5. C. V. Rao and A. P. Arkin, J. Chem. Phys. 118, 4999 (2003).
6. D. T. Gillespie, Markov Processes: An Introduction for Physical Scientists (Academic, San Diego, 1992). See especially Chap. and Appendix D.
7. D. T. Gillespie, Markov Processes: An Introduction for Physical Scientists (Academic, San Diego, 1992). See especially Chap. and Appendix D.
8. I. G. Darvey, B. W. Ninham, and P. J. Staff, J. Chem. Phys. 45, 2145 (1966).
9. L. Michaelis and M. L. Menten, Biochem. Z. 49, 333 (1913); K. M. Plowman, Enzyme Kinetics (McGraw-Hill, New York, 1971).
10. L. Michaelis and M. L. Menten, Biochem. Z. 49, 333 (1913); K. M. Plowman, Enzyme Kinetics (McGraw-Hill, New York, 1971).
11. D. T. Gillespie, J. Chem. Phys. 0021-9606 10.1063/1.1378322 115, 1716 (2001);
12. D. T. Gillespie and L. R. Petzold, J. Chem. Phys. 119, 8229 (2003).