Interaction of isoquinoline alkaloid palmatine with deoxyribonucleic acids: Binding heterogeneity, and conformational and thermodynamic aspects

Chemistry and Biodiversity

Volumn 5, Issue 4, 2008, Pages 575-590

  Bhadra, Kakali ^a   Maiti, Motilal ^a   Kumar, Gopinatha Suresh ^a  

^a INDIAN INSTITUTE OF CHEMICAL BIOLOGY   (India)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL DNA; DNA; ISOQUINOLINE ALKALOID; PALMATINE; POLY(DEOXYADENYLATE DEOXYTHYMIDYLATE); POLYGLACTIN; POLYMER; PURINE; PYRIMIDINE; BERBERINE DERIVATIVE; CALF THYMUS DNA;

ARTICLE; AT RICH SEQUENCE; BASE PAIRING; BINDING AFFINITY; CIRCULAR DICHROISM; CONFORMATIONAL TRANSITION; COOPERATIVE BINDING; DNA BINDING; DRUG CONFORMATION; DRUG DNA BINDING; DRUG STRUCTURE; ENERGY TRANSFER; ENTHALPY; ENTROPY; GC RICH SEQUENCE; IONIC STRENGTH; ISOTHERM; ISOTHERMAL TITRATION CALORIMETRY; NONCOOPERATIVE BINDING; NONHUMAN; STRUCTURE ANALYSIS; THERMODYNAMICS; THYMUS; CHEMISTRY; CLOSTRIDIUM PERFRINGENS; CONFORMATION; OSMOLARITY;

CLOSTRIDIUM PERFRINGENS; ESCHERICHIA COLI; MICROCOCCUS LUTEUS;

BERBERINE ALKALOIDS; CIRCULAR DICHROISM; CLOSTRIDIUM PERFRINGENS; DNA; NUCLEIC ACID CONFORMATION; OSMOLAR CONCENTRATION; THERMODYNAMICS;

EID: 45549103432     PISSN: 16121872     EISSN: 16121880     Source Type: Journal    
DOI: 10.1002/cbdv.200890054     Document Type: Article

References (35)

1. C. L. Kuo, C. C. Chou, B. Y.-M. Yung, Cancer Lett. 1995, 93, 193.
2. T. Schmeller, B. Latz-Brüning, M. Wink, Phytochemistry 1997, 44, 257.
3. Y. L. Chang, S. Usami, M. T. Hsieh, Life Sci. 1999, 64, 597.
4. H. S. Lee, J. Agric. Food Chem. 2002, 50, 7013.
5. B. X. Li, B. F. Yang, J. Zhou, C. Q. Xu, Y. R. Li, Acta Pharmacol. Sin. 2001, 22, 125.
6. Y. Li, L. Y. Fu, W. X. Yao, G. J. Xia, M. X. Jiang, Acta Pharmacol. Sin. 2002, 23, 612
7. F. Wang, H.-Y. Zhou, L. Cheng, G. Zhao, J. Zhou, L.-Y. Fu, W.-X. Yao, World J. Gastroenterol. 2003, 9, 329.
8. D. S. Pilch, C. Yu, D. Makhey, E. J. LaVoie, A. R. Srinivasan, W. K. Olson, R. R. Sauers, K. J. Breslauer, N. E. Geacintov, L. F. Liu, Biochemistry 1997, 36, 12542.
9. T.-K. Li, E. Bathory, E. J. LaVoie, A. R. Srinivasan, W. K. Olson, R. R. Sauers, L. F. Liu, D. S. Pilch, Biochemistry 2000, 39, 7107.
10. Y. Qin, J. Y. Pang, W. H. Chen, Z. Z. Zhao, L. Liu, Z. H. Jiang, Chem. Biodivers. 2007, 4, 481.
11. M. Maiti, G. Suresh Kumar, Med. Res. Rev. 2007, 27, 649.
12. M. Maiti, G. Suresh Kumar, in 'Bioactive Heterocycles-Topics in Heterocyclic Chemistry', Vol. 10, Ed. M. T. H. Khan, Springer, Heidelberg, 2007, 155.
13. J. Kluza, B. Baldeyrou, P. Colson, P. Rasoanaivo, L. Mambu, F. Frappier, C. Bailly, Eur. J. Pharm. Sci. 2003, 20, 383.
14. K. Bhadra, M. Maiti, G. Suresh Kumar, Biochim. Biophys. Acta 2007, 1770, 1071.
15. J. D. McGhee, P. H. von Hippel, J. Mol. Biol. 1974, 86, 469.
16. P. V. Scaria, R. H. Shafer, J. Biol. Chem. 1991, 266, 5417.
17. W. D. Wilson, Y.-H. Wang, C. R. Krishnamoorthy, J. C. Smith, Biochemistry 1985, 24, 3991.
18. J. B. Chaires, Biochemistry 1983, 22, 4204.
19. D. E. Graves, T. R. Krug, Biochemistry 1983, 22, 3941.
20. R. M. Wadkins, D. E. Graves, Nucleic Acids Res. 1989, 17, 9933.
21. M. Hogan, N. Dattagupta, D. M. Crothers, Nature 1979, 278, 521.
22. L. A. Marky, R. B. Macgregor Jr., Biochemistry 1990, 29, 4805.
23. R. L. Jones, G. Zon, C. R. Krishnamoorthy, W. D. Wilson, Biochemistry 1986, 25, 7431.
24. J. Strum, Biopolymers 1982, 21, 1189.
25. W. Saenger, 'Principles of nucleic acid structures', Springer, New York, 1984.
26. M. T. Record Jr., C. F. Anderson, T. M. Lohman, Q. Rev. Biophys. 1978, 11, 103.
27. K. M. Guthrie, A. D. C. Parenty, L. V. Smith, L. Cromin, A. Cooper, Biophys. Chem. 2007, 126, 117.
28. J. B. Chaires, Biopolymers 1997, 44, 2012.
29. J. Portugal, D. J. Cashman, J. O. Trent, N. Ferrer-Miralles, T. Przewloka, I. Fokt, W. Priebe, J. B. Chaires, J. Med. Chem. 2005, 48, 8209.
30. J. B. Chaires, Anti-Cancer Drug Des. 1996, 11, 569.
31. I. Haq, Arch. Biochem. Biophys. 2002, 403, 1.
32. Md. M. Islam, R. Sinha, G. Suresh Kumar, Biophys. Chem. 2007, 125, 508.
33. F. V. Murphy, M. E. Churchill, Structure 2000, 8, R83.
34. J. Ren, T. C. Jenkins, J. B. Chaires, Biochemistry 2000, 39, 8439.
35. J. H. Ha, R. S. Soplar, M. T. Record Jr., J. Mol. Biol. 1989, 209, 801.