Enhanced pClustering and its applications to gene expression data

Proceedings - Fourth IEEE Symposium on Bioinformatics and Bioengineering, BIBE 2004

Volumn , Issue , 2004, Pages 275-282

  Yoon, Sungroh ^a   Nardini, Christine ^b   Benini, Luca ^b   De Micheli, Giovanni ^a  

^a STANFORD UNIVERSITY   (United States)

^b UNIVERSITY OF BOLOGNA   (Italy)

Author keywords

[No Author keywords available]

Indexed keywords

ALGORITHMS; ARRAYS; COMPUTATIONAL COMPLEXITY; DATA REDUCTION; DNA; GENES;

CLUSTERING STRATEGIES; GENE EXPRESSION DATA ANALYSIS; PCLUSTERING;

GENETIC ENGINEERING;

EID: 4544381431     PISSN: None     EISSN: None     Source Type: Conference Proceeding    
DOI: None     Document Type: Conference Paper

References (14)

1. A. V. Aho, J. E. Hopcroft, and J. D. Ullman. Data Structures and Algorithms. McGraw-Hill, Addison-Wesley, 1983.
2. A. Alizadeh and et all. Distinct types of diffuse large b-cell lymphoma identified by gene-expression profiling. Nature, 4051:503-511, 2000.
3. A. Ben-Dor, B. Chor, R. Karp, and Z. Yakhini. Discovering local structure in gene expression data: The order-preserving submatrix problem. In Proceedings of RECOMB, 2002.
4. P. Berkhin. Survey of clustering data mining techniques. Technical report, Accrue Software, San Jose, CA, 2002.
5. Y. Cheng and G. M. Church. Biclustering of expression data. In Proceedings of ISMB, pages 93-103, 2000.
6. G. Getz, E. Levine, and E. Domany. Coupled two-way clustering analysis of gene microarray data. Proc. Natl. Acad. Sci USA, 94:12079-12084, 2000.
7. I. S. Kohane, A. T. Kho, and A. J. Butte. Microarrays for an Integrative Genomics. The MIT Press, Cambridge, Massachusetts, 2003.
8. S. Raychaundhuri, P. D. Sutphin, J.T. Chang, and R. B. Altman. Basic microarray analysis: grouping and feature reduction. Trends in Biotechnology, 19(5):189-193, May 2001.
9. B. Rosner. Fundamentals of Biostatistics. Duxbury, Pacific Grove, California, fifth edition, 2000.
10. E. Segal, B. Taskar, A. Gasch, N. Friedman, and D. Koller. Rich probabilistic models for gene expression. Bioinformatics, 17(Suppl 1):S243-52, 2001.
11. A. Tanay, R. Sharan, and R. Shamir. Discovering statistically significant biclusters in gene expression data. In Proceedings of ISMB, 2002.
12. S. Tavazoie, J. D. Hughes, M. J. Campbell, R. J. Cho, and G. M. Church. Systematic determination of genetic network architecture. Nature Genetics, 22:281-285, 1999.
13. S. Volinia and M. Negrini. (personal communication). Univerity of Ferrara - International Cancer Center, Rovigo, Italy.
14. H. Wang, W. Wang, J. Yang, and P. S. Yu. Clustering by pattern similarity in large data sets. In Proceedings of ACM SIGMOD, pages 394-405, 2002.