Application of time series analysis on molecular dynamics simulations of proteins: A study of different conformational spaces by principal component analysis

Journal of Chemical Physics

Volumn 121, Issue 10, 2004, Pages 4759-4769

  Alakent, Burak ^a   Doruker, Pemra ^a   Camurdan, Mehmet C ^a  

^a BOGAZICI UNIVERSITY   (Turkey)

Author keywords

[No Author keywords available]

Indexed keywords

COMPUTER SIMULATION; CONFORMATIONS; DIFFUSION; EIGENVALUES AND EIGENFUNCTIONS; ENZYME INHIBITION; LEAST SQUARES APPROXIMATIONS; MATHEMATICAL MODELS; MATHEMATICAL OPERATORS; MOLECULAR DYNAMICS; PRINCIPAL COMPONENT ANALYSIS; STOCHASTIC PROGRAMMING; TIME SERIES ANALYSIS;

CONFORMATIONAL SPACES; ENERGY BARRIERS; NORMAL MODE ANALYSIS; STOCHASTIC MODELS;

PROTEINS;

PROTEIN;

AMINO ACID SEQUENCE; ARTICLE; CHEMICAL MODEL; CHEMICAL STRUCTURE; CHEMISTRY; COMPUTER SIMULATION; METHODOLOGY; MOLECULAR GENETICS; MOTION; PRINCIPAL COMPONENT ANALYSIS; PROTEIN CONFORMATION; SEQUENCE ANALYSIS; STRUCTURE ACTIVITY RELATION; TIME;

AMINO ACID SEQUENCE; COMPUTER SIMULATION; MODELS, CHEMICAL; MODELS, MOLECULAR; MOLECULAR SEQUENCE DATA; MOTION; PRINCIPAL COMPONENT ANALYSIS; PROTEIN CONFORMATION; PROTEINS; SEQUENCE ANALYSIS, PROTEIN; STRUCTURE-ACTIVITY RELATIONSHIP; TIME FACTORS;

EID: 4544353149     PISSN: 00219606     EISSN: None     Source Type: Journal    
DOI: 10.1063/1.1778377     Document Type: Article

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