Evolutionary origin of the medaka Y chromosome

Current Biology

Volumn 14, Issue 18, 2004, Pages 1664-1669

  Kondo, Mariko ^a   Nanda, Indrajit ^a   Hornung, Ute ^a   Schmid, Michael ^a   Schartl, Manfred ^a  

^a UNIVERSITY OF WÜRZBURG   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

MAMMALIA; ORYZIAS; ORYZIAS LATIPES; VERTEBRATA;

EID: 4544320384     PISSN: 09609822     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.cub.2004.09.026     Document Type: Article

References (40)

1. Graves J.A. Interactions between SRY and SOX genes in mammalian sex determination. Bioessays. 20:1998;264-269
2. Koopman P. Sry, Sox9 and mammalian sex determination. 91 E.X.S., Scherer G., Schmid M. Genes and Mechanisms in Vertebrate Sex Determination. 2001;25-56 Birkhauser Verlag, Basel
3. Marshall Graves J.A. The rise and fall of SRY. Trends Genet. 18:2002;259-264
4. Morrish B.C., Sinclair A.H. Vertebrate sex determination. Many means to an end Reproduction. 124:2002;447-457
5. Sinclair A.H., Berta P., Palmer M.S., Hawkins J.R., Griffiths B.L., Smith M.J., Foster J.W., Frischauf A.M., Lovell-Badge R., Goodfellow P.N. A gene from the human sex-determining region encodes a protein with homology to a conserved DNA-binding motif. Nature. 346:1990;240-244
6. Nanda I., Kondo M., Hornung U., Asakawa S., Winkler C., Shimizu A., Shan Z., Haaf T., Shimizu N., Shima A., et al. A duplicated copy of DMRT1 in the sex-determining region of the Y chromosome of the medaka, Oryzias latipes. Proc. Natl. Acad. Sci. USA. 99:2002;11778-11783
7. Matsuda M., Nagahama Y., Shinomiya A., Sato T., Matsuda C., Kobayashi T., Morrey C.E., Shibata N., Asakawa S., Shimizu N., et al. DMY is a Y-specific DM-domain gene required for male development in the medaka fish. Nature. 417:2002;559-563
8. Graves J.A. Evolution of the testis-determining gene-the rise and fall of SRY. Novartis Found. Symp. 244:2002;86-97
9. Kondo M., Nanda I., Hornung U., Asakawa S., Shimizu N., Mitani H., Schmid M., Shima A., Schartl M. Absence of the candidate male sex-determining gene dmrt1b(Y) of medaka from other fish species. Curr. Biol. 13:2003;416-420
10. Wittbrodt J., Shima A., Schartl M. Medaka-a model organism from the far East. Nat. Rev. Genet. 3:2002;53-64
11. Brunner B., Hornung U., Shan Z., Nanda I., Kondo M., Zend-Ajusch E., Haaf T., Ropers H.H., Shima A., Schmid M., et al. Genomic organization and expression of the doublesex-related gene cluster in vertebrates and detection of putative regulatory regions for dmrt1. Genomics. 77:2001;8-17
12. Zarkower D. Establishing sexual dimorphism. Conservation amidst diversity? Nat. Rev. Genet. 2:2001;175-185
13. Matsuda M., Sato T., Toyazaki Y., Nagahama Y., Hamaguchi S., Sakaizumi M. Oryzias curvinotus has DMY, a gene that is required for male development in the medaka, O. latipes. Zoolog. Sci. 20:2003;159-161
14. Toyazaki, Y., Sakaizumi, M., and Hamaguchi, S. (2002). Three species closely related to Oryzias latipes have a male-heterogametic (XX-XY) sex-determining system (Abstract of paper presented at the 73rd Annual Meeting of the Zoological Society of Japan). Zoolog Sci, 19, 1496.
15. Nanda I., Hornung U., Kondo M., Schmid M., Schartl M. Common spontaneous sex-reversed XX males of the medaka, Oryzias latipes. Genetics. 163:2003;245-251
16. Shinomiya A., Otake H., Togashi K., Hamaguchi S., Sakaizumi M. Field survey of sex-reversals in the medaka, Oryzias latipes. Genotypic sexing of wild populations Zoolog. Sci. 21:2004;613-619
17. Martin A.P., Palumbi S.R. Body size, metabolic rate, generation time, and the molecular clock. Proc. Natl. Acad. Sci. USA. 90:1993;4087-4091
18. Tajima F. Simple methods for testing the molecular evolutionary clock hypothesis. Genetics. 135:1993;599-607
19. Volff J.N., Kondo M., Schartl M. Medaka dmY/dmrt1Y is not the universal primary sex-determining gene in fish. Trends Genet. 19:2003;196-199
20. Zhang J. Evolution of DMY, a Newly Emergent Male Sex-Determination Gene of Medaka Fish. Genetics. 166:2004;1887-1895
21. Santini F., Tyler J.C. A phylogeny of the families of fossil and extant tetraodontiform fishes (Acanthomorpha, Tetraodontiformes), Upper Cretaceous to recent. Zool. J. Linn. Soc. 139:2003;565-617
22. Kumar S., Subramanian S. Mutation rates in mammalian genomes. Proc. Natl. Acad. Sci. USA. 99:2002;803-808
23. Kondo M., Nagao E., Mitani H., Shima A. Differences in Recombination Frequencies during Female and Male Meioses of the Sex Chromosomes of the Medaka, Oryzias latipes. Genet. Res. 78:2001;23-30
24. Charlesworth B. The evolution of chromosomal sex determination and dosage compensation. Curr. Biol. 6:1996;149-162
25. Ohno S. Sex Chromosomes and Sex Linked Genes. 1967;Springer, New York
26. Charlesworth B. The evolution of sex chromosomes. Science. 251:1991;1030-1033
27. Vallender E.J., Lahn B.T. How mammalian sex chromosomes acquired their peculiar gene content. Bioessays. 26:2004;159-169
28. Marshall Graves J.A., Shetty S. Sex from W to Z. Evolution of vertebrate sex chromosomes and sex determining genes J. Exp. Zool. 290:2001;449-462
29. Liu Z., Moore P.H., Ma H., Ackerman C.M., Ragiba M., Yu Q., Pearl H.M., Kim M.S., Charlton J.W., Stiles J.I., et al. A primitive Y chromosome in papaya marks incipient sex chromosome evolution. Nature. 427:2004;348-352
30. Naruse K., Tanaka M., Mita K., Shima A., Postlethwait J., Mitani H. A medaka gene map. The trace of ancestral vertebrate proto-chromosomes revealed by comparative gene mapping Genome Res. 14:2004;820-828
31. Willhoeft U., Traut W. Molecular differentiation of the homomorphic sex chromosomes in Megaselia scalaris (Diptera) detected by random DNA probes. Chromosoma. 99:1990;237-242
32. Naruse K., Fukamachi S., Mitani H., Kondo M., Matsuoka T., Kondo S., Hanamura N., Morita Y., Hasegawa K., Nishigaki R., et al. A detailed linkage map of medaka, Oryzias latipes. Comparative genomics and genome evolution Genetics. 154:2000;1773-1784
33. Schartl M., Wilde B., Schlupp I., Parzefall J. Evolutionary origin of a parthenoform, the Amazon molly Poecilia formosa, on the basis of a molecular genealogy. Evolution. 49:1995;827-835
34. Altschmied J., Hornung U., Schlupp I., Gadau J., Kolb R., Schartl M. Isolation of DNA suitable for PCR for field and laboratory work. Biotechniques. 23:1997;228-229
35. Thompson J.D., Higgins D.G., Gibson T.J. Clustal w. Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice Nucleic Acids Res. 22:1994;4673-4680
36. Swofford, D.L. (2001). PAUP*. Phylogenetic Analysis Using Parsimony (*and Other Methods). Version 4. Sinauer Associates, Sunderland, Massachusetts.
37. Kumar S., Tamura K., Jakobsen I.B., Nei M. MEGA2. molecular evolutionary genetics analysis software Bioinformatics. 17:2001;1244-1245
38. Kimura M. A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J. Mol. Evol. 16:1980;111-120
39. Kondo M., Froschauer A., Kitano A., Nanda I., Hornung U., Volff J.N., Asakawa S., Mitani H., Naruse K., Tanaka M., et al. Molecular cloning and characterization of DMRT genes from the medaka Oryzias latipes and the platyfish Xiphophorus maculatus. Gene. 295:2002;213-222
40. Naruse K. Classification and phylogeny of fish species of the genus Oryzias and its relatives. Fish Biol. J. Medaka. 8:1996;1-9