Sequence evolution and the mechanism of protein folding

Biophysical Journal

Volumn 79, Issue 4, 2000, Pages 1787-1799

  Ortiz, Angel R ^a,b   Skolnick, Jeffrey ^a  

^a SCRIPPS RESEARCH INSTITUTE   (United States)

^b MOUNT SINAI SCHOOL OF MEDICINE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

PROTEIN;

AMINO ACID SEQUENCE; ARTICLE; MODULATION; MOLECULAR DYNAMICS; MOLECULAR INTERACTION; MUTATION; PRESSURE; PROTEIN FOLDING; PROTEIN STRUCTURE; THERMODYNAMICS;

EID: 0033807252     PISSN: 00063495     EISSN: None     Source Type: Journal    
DOI: 10.1016/S0006-3495(00)76430-7     Document Type: Article

References (11)

1. Alm, E., and D. Baker. 1999. Prediction of protein-folding mechanisms from free-energy landscapes derived from native structures. Proc. Natl. Acad. Sci. USA. 96:11305-11310.
2. Bahar, I., A. R. Atilgan, and B. Erman. 1997. Direct evaluation of thermal fluctuations in proteins using a single-parameter harmonic potential. Fold Des. 2:173-181.
3. Bernstein, F. C., T. F. Koetzle, G. J. Williams, E. E. Meyer, Jr., M. D. Brice, J. R. Rodgers, O. Kennard, T. Shimanouchi, and M. Tasumi. 1977. The Protein Data Bank: a computer-based archival file for macromolecular structures. J. Mol. Biol. 112:535-542.
4. Demirel, M. C., A. R. Atilgan, R. L. Jernigan, B. Erman, and I. Bahar. 1998. Identification of kinetically hot residues in proteins [In Process Citation]. Protein Sci. 7:2522-2532.
5. Dinner, A. R., S. S. So, and M. Karplus. 1998. Use of quantitative structure-property relationships to predict the folding ability of model proteins. Proteins. 33:177-203.
6. Galzitskaya, O. V., and A. V. Finkelstein. 1999. A theoretical search for folding/unfolding nuclei in three-dimensional protein structures. Proc. Natl. Acad. Sci. USA. 96:11299-11304.
7. Hardle, W., and J. S. Marron. 1995. Fast and simple scatterplot smoothing. Comput. Stat. Data Analysis. 20:1-17.
8. Johnson, R. A., and D. W. Wichern. 1992. Applied Multivariate Statistical Analysis. 3rd ed. Prentice Hall, Upper Saddler River, NJ.
9. Shakhnovich, E. I. 1996. Modeling protein folding: the beauty and power of simplicity. Fold. Design. 1:R50-R54.
10. Shakhnovich, E. 1997. Theoretical studies of protein folding thermodynamics and kinetics. Curr. Opin. Struct. Biol. 7:29-40.
11. Shakhnovich, E., V. Abkevich, and O. Ptitsyn. 1996. Conserved residues and the mechanism of protein folding. Nature. 379:96-98.