Evolution and potential function of fibrinogen-like domains across twelve Drosophila species

BMC Genomics

Volumn 9, Issue , 2008, Pages

  Middha, Sumit ^a,b   Wang, Xinguo ^a  

^a INDIANA UNIVERSITY   (United States)

^b MAYO CLINIC   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

CARBOHYDRATE; FIBRINOGEN; FIBRINOGEN RELATED PROTEIN; INSECT PROTEIN;

ARTICLE; CONTROLLED STUDY; DROSOPHILA; DROSOPHILA MELANOGASTER; GENE NUMBER; GENE SEQUENCE; GENE STRUCTURE; GENETIC CONSERVATION; GENOME; INNATE IMMUNITY; MULTIGENE FAMILY; NONHUMAN; NUCLEOTIDE SEQUENCE; PREDICTION; PROTEIN DOMAIN; PROTEIN FAMILY; PROTEIN FUNCTION; SEQUENCE HOMOLOGY; AMINO ACID SEQUENCE; ANIMAL; CHEMISTRY; CHROMOSOME; CLASSIFICATION; GENETICS; GENOMICS; METABOLISM; MOLECULAR EVOLUTION; MOLECULAR GENETICS; PHYLOGENY; PROTEIN TERTIARY STRUCTURE; SEQUENCE ALIGNMENT;

DROSOPHILA MELANOGASTER; INVERTEBRATA; VERTEBRATA;

AMINO ACID SEQUENCE; ANIMALS; CHROMOSOMES; CONSERVED SEQUENCE; DROSOPHILA; EVOLUTION, MOLECULAR; FIBRINOGEN; GENOME, INSECT; GENOMICS; INSECT PROTEINS; MOLECULAR SEQUENCE DATA; PHYLOGENY; PROTEIN STRUCTURE, TERTIARY; SEQUENCE ALIGNMENT;

EID: 45249111774     PISSN: None     EISSN: 14712164     Source Type: Journal    
DOI: 10.1186/1471-2164-9-260     Document Type: Article

References (38)

1. Gorkun OV Veklich YI Weisel JW Lord ST The conversion of fibrinogen to fibrin: Recombinant fibrinogen typifies plasma fibrinogen Blood 1997 89 4407-14 9192765
2. Gokudan S Muta T Tsuda R Koori K Kawahara T Seki N Mizunoe Y Wai SN Iwanaga S Kawabata S Horseshoe crab acetyl grouprecognizing lectins involved in innate immunity are structurally related to fibrinogen Proc Natl Acad Sci USA 1999 96 10086-10091 17846 10468566 10.1073/ pnas.96.18.10086
3. Wang X Zhao Q Christensen BM Identification and characterization of the fibrinogen-like domain of fibrinogen-related proteins in the mosquito, Anopheles gambiae, and the fruitfly, Drosophila melanogaster, genomes BMC Genomics 2005 6 114 1242226 16150145 10.1186/1471-2164-6-114
4. Matsushita M Fujita T The role of ficolins in innate immunity Immunobiology 2002 205 490-497 10.1078/0171-2985-00149 12396010
5. Erickson HP Tenascin-C, tenascin-R and tenascin-X: A family of talented proteins in search of functions Curr Opin Cell Biol 1993 5 869-76 10.1016/0955-0674(93)90037-Q 7694605
6. Kobayashi R Mizutani A Hidaka H Isolation and characterization of a 36-kDa microfibril-associated glycoprotein by the newly synthesized isoquinolinesulfonamide affinity chromatography Biochem Biophys Res Commun 1994 198 1262-6 10.1006/bbrc.1994.1178 8117283
7. Endo Y Matsushita M Fujita T Role of ficolin in innate immunity and its molecular basis Immunobiology 2007 212 371-9 10.1016/j.imbio.2006.11.014 17544822
8. Lu J Teh C Kishore U Reid KB Collectins and ficolins: Sugar pattern recognition molecules of the mammalian innate immune system Biochim Biophys Acta 2002 1572 387-400 12223281
9. Lu J Le Y Ficolins and the fibrinogen-like domain Immunobiology 1998 199 190-199 9777405
10. Teh C Le Y Lee SH Lu J M-ficolin is expressed on monocytes and is a lectin binding to N-acetyl-D-glucosamine and mediates monocyte adhesion and phagocytosis of Escherichia coli Immunology 2000 101 225-32 2327072 11012776 10.1046/j.1365-2567.2000.00099.x
11. Adema CM Hertel LA Miller RD Loker ES A family of fibrinogen-related proteins that precipitates parasite-derived molecules is produced by an invertebrate after infection Proc Natl Acad Sci USA 1997 94 8691-8696 23082 9238039 10.1073/pnas.94.16.8691
12. Kenjo A Takahashi M Matsushita M Endo Y Nakata M Mizuochi T Fujita T Cloning and characterization of novel ficolins from the solitary ascidian, Halocynthia roretzi J Biol Chem 2001 276 19959-19965 10.1074/ jbc.M011723200 11259430
13. Schroder HC Ushijima H Krasko A Gamulin V Thakur NL Diehl-Seifert B Muller IM Muller WE Emergence and disappearance of an immune molecule, an antimicrobial lectin, in basal metazoa. A tachylectin-related protein in the sponge Suberites domuncula J Biol Chem 2003 278 32810-7 10.1074/ jbc.M304116200 12805362
14. Wang X Rocheleau TA Fuchs JF Hillyer JF Chen CC Christensen BM A novel lectin with a fibrinogen-like domain and its potential involvement in the innate immune response of Armigeres subalbatus against bacteria Insect Mol Biol 2004 13 273-82 10.1111/j.0962-1075.2004.00484.x 15157228
15. Waterhouse RM Kriventseva EV Meister S Xi Z Alvarez KS Bartholomay LC Barillas-Mury C Bian G Blandin S Christensen BM Dong Y Jiang H Kanost MR Koutsos AC Levashina EA Li J Ligoxygakis P Maccallum RM Mayhew GF Mendes A Michel K Osta MA Paskewitz S Shin SW Vlachou D Wang L Wei W Zheng L Zou Z Severson DW Raikhel AS Kafatos FC Dimopoulos G Zdobnov EM Christophides GK Evolutionary dynamics of immune-related genes and pathways in disease-vector mosquitoes Science 2007 316 5832 1738-43 2042107 17588928 10.1126/science.1139862
16. Rubin GM Yandell MD Wortman JR Gabor Miklos GL Nelson CR Hariharan IK Fortini ME Li PW Apweiler R Fleischmann W Cherry JM Henikoff S Skupski MP Misra S Ashburner M Birney E Boguski MS Brody T Brokstein P Celniker SE Chervitz SA Coates D Cravchik A Gabrielian A Galle RF Gelbart WM George RA Goldstein LS Gong F Guan P Harris NL Hay BA Hoskins RA Li J Li Z Hynes RO Jones SJ Kuehl PM Lemaitre B Littleton JT Morrison DK Mungall C O'Farrell PH Pickeral OK Shue C Vosshall LB Zhang J Zhao Q Zheng XH Lewis S Comparative genomics of the eukaryotes Science 2000 287 5461 2204-15 10.1126/science.287.5461.2204 10731134
17. Kellis M Patterson N Endrizzi M Birren B Lander ES Sequencing and comparison of yeast species to identify genes and regulatory elements Nature 2003 423 6937 241-54 10.1038/nature01644 12748633
18. McClelland M Florea L Sanderson K Clifton SW Parkhill J Churcher C Dougan G Wilson RK Miller W Comparison of the Escherichia coli K-12 genome with sampled genomes of a Klebsiella pneumoniae and three salmonella enterica serovars, Typhimurium, Typhi and Paratyphi Nucleic Acids Res 2000 28 24 4974-86 115240 11121489 10.1093/nar/28.24.4974
19. Drosophila 12 Genomes Consortium Evolution of genes and genomes on the drosophila phylogeny Nature 2007 450 203-218 10.1038/nature06341 17994087
20. Kairies N Beisel HG Fuentes-Prior P Tsuda R Muta T Iwanaga S Bode W Huber R Kawabata S The 2.0-A crystal structure of tachylectin 5A provides evidence for the common origin of the innate immunity and the blood coagulation systems Proc Natl Acad Sci USA 2001 98 13519-24 61073 11707569 10.1073/pnas.201523798
21. Nozawa M Nei M Evolutionary dynamics of olfactory receptor genes in Drosophila species Proc Natl Acad Sci USA 2007 104 17 7122-7 1855360 17438280 10.1073/pnas.0702133104
22. Chukkapalli G Guda C Subramaniam S SledgeHMMER: A web server for batch searching the Pfam database Nucleic Acids Res 2004 32 Web Server W542-4 441533 15215445 10.1093/nar/gkh395
23. SledgeHMMER http://bioapps.rit.albany.edu/sledgeHMMER/
24. AAA database http://rana.lbl.gov/drosophila
25. Notredame C Higgins D Heringa J T-Coffee: A novel method for multiple sequence alignments Journal of Molecular Biology 2000 302 205-217 10.1006/jmbi.2000.4042 10964570
26. T-Coffee http://tcoffee.vital-it.ch/cgi-bin/Tcoffee/tcoffee_cgi/index.cgi
27. PHD program http://www.predictprotein.org/
28. Tanio M Kondo S Sugio S Kohno T Trivalent recognition unit of innate immunity system; crystal structure of trimeric human m-ficolin fibrinogen-like domain J Biol Chem 2007 282 3889-3895 10.1074/ jbc.M608627200 17148457
29. GEO profile http://www.ncbi.nlm.nih.gov/geo/
30. Vodovar N Vinals M Liehl P Basset A Degrouard J Spellman P Boccard F Lemaitre B Drosophila host defense after oral infection by an entomopathogenic Pseudomonas species Proc Natl Acad Sci USA 2005 102 32 11414-9 1183552 16061818 10.1073/pnas.0502240102
31. Johansson KC Metzendorf C Soderhall K Microarray analysis of immune challenged Drosophila hemocytes Exp Cell Res 2005 305 1 145-55 10.1016/ j.yexcr.2004.12.018 15777795
32. King-Jones K Horner MA Lam G Thummel CS The DHR96 nuclear receptor regulates xenobiotic responses in Drosophila Cell Metab 2006 4 1 37-48 10.1016/j.cmet.2006.06.006 16814731
33. Flybse http://flybase.org/
34. Comparative Annotation Freeze 1 (CAF1) http://insects.eugenes.org/ species/data/
35. Clustalw http://www.ebi.ac.uk/Tools/clustalw/
36. Gouet P Courcelle E Stuart DI Metoz F ESPript: Multiple sequence alignments in PostScript Bioinformatics 1999 15 305-8 10.1093/ bioinformatics/15.4.305 10320398
37. Phylip http://evolution.genetics.washington.edu/phylip.html
38. Guex N Peitsch MC SWISS-MODEL and the Swiss-Pdb-Viewer: An environment for comparative protein modeling Electrophoresis 1997 18 2714-23 10.1002/ elps.1150181505 9504803