-
1
-
-
0034604105
-
A surprising simplicity to protein folding
-
Baker D. A surprising simplicity to protein folding. Nature 2000;405:39-42.
-
(2000)
Nature
, vol.405
, pp. 39-42
-
-
Baker, D.1
-
2
-
-
0032502839
-
Contact order, transition state placement and the refolding rates of single domain proteins
-
Plaxco KW, Simons KT, Baker D. Contact order, transition state placement and the refolding rates of single domain proteins. J Mol Biol 1998;277:985-994.
-
(1998)
J Mol Biol
, vol.277
, pp. 985-994
-
-
Plaxco, K.W.1
Simons, K.T.2
Baker, D.3
-
3
-
-
0032506017
-
Limited internal fraction in the rate-limiting step of a two-state protein folding reaction
-
Plaxco KW, Baker D. Limited internal fraction in the rate-limiting step of a two-state protein folding reaction. Proc Natl Acad Sci USA 1998;95:13591-13596.
-
(1998)
Proc Natl Acad Sci USA
, vol.95
, pp. 13591-13596
-
-
Plaxco, K.W.1
Baker, D.2
-
4
-
-
0034687123
-
Topology, stability, sequence, and length: Defining the determinants of two-state folding protein folding kinetics
-
Plaxco KW, Simons KT, Ruczinski I, Baker D. Topology, stability, sequence, and length: defining the determinants of two-state folding protein folding kinetics. Biochemistry 2000;39:11177-11183.
-
(2000)
Biochemistry
, vol.39
, pp. 11177-11183
-
-
Plaxco, K.W.1
Simons, K.T.2
Ruczinski, I.3
Baker, D.4
-
5
-
-
0035967862
-
Comparison between long-range interactions and contact order in determining the folding rate of two-state proteins: Application of long-range order to folding rate prediction
-
Gromiha MM, Selvaraj S. Comparison between long-range interactions and contact order in determining the folding rate of two-state proteins: application of long-range order to folding rate prediction. J Mol Biol 2001;310:27-32.
-
(2001)
J Mol Biol
, vol.310
, pp. 27-32
-
-
Gromiha, M.M.1
Selvaraj, S.2
-
6
-
-
0034984144
-
Protein folding theory: From lattice to all-atom models
-
Mimy L, Shalhnovich E. Protein folding theory: from lattice to all-atom models. Annu Rev Biophys Biomol Strnct 2001;30:361-396.
-
(2001)
Annu Rev Biophys Biomol Strnct
, vol.30
, pp. 361-396
-
-
Mimy, L.1
Shalhnovich, E.2
-
7
-
-
0037133574
-
How the folding rate constant of simple, single-domain proteins depends on the number of native contacts
-
Makarov DE, Keller CA, Plaxco KW, Metiu H. How the folding rate constant of simple, single-domain proteins depends on the number of native contacts. Proc Natl Acad Sci USA 2002;99:3535-3539.
-
(2002)
Proc Natl Acad Sci USA
, vol.99
, pp. 3535-3539
-
-
Makarov, D.E.1
Keller, C.A.2
Plaxco, K.W.3
Metiu, H.4
-
8
-
-
0037432567
-
Local secondary structure content predicts folding rates for simple, two-state folding proteins
-
Gong H, Isom DG, Srinivasan R, Rose GD. Local secondary structure content predicts folding rates for simple, two-state folding proteins. J Mol Biol 2003;327:1149-1154.
-
(2003)
J Mol Biol
, vol.327
, pp. 1149-1154
-
-
Gong, H.1
Isom, D.G.2
Srinivasan, R.3
Rose, G.D.4
-
9
-
-
18344371857
-
A statistical model for predicting protein folding rates from amino acid sequence with structural class information
-
Gromiha MM. A statistical model for predicting protein folding rates from amino acid sequence with structural class information. J Chem Inf Model 2005;45:494-501.
-
(2005)
J Chem Inf Model
, vol.45
, pp. 494-501
-
-
Gromiha, M.M.1
-
10
-
-
33646028225
-
Amino acid sequence predicts folding rate of middle-size two-state proteins
-
Huang JT, Tian J. Amino acid sequence predicts folding rate of middle-size two-state proteins. Proteins 2006;63:551-554.
-
(2006)
Proteins
, vol.63
, pp. 551-554
-
-
Huang, J.T.1
Tian, J.2
-
11
-
-
33749035288
-
Direct correlation between proteins' folding rates and their amino acid compositions: An ab initio folding rate prediction
-
Ma BG, Guo JX, Zhang HY. Direct correlation between proteins' folding rates and their amino acid compositions: An ab initio folding rate prediction. Proteins 2006;65:362-372.
-
(2006)
Proteins
, vol.65
, pp. 362-372
-
-
Ma, B.G.1
Guo, J.X.2
Zhang, H.Y.3
-
12
-
-
0037402639
-
Chain length is the main determinant of the folding rate for proteins with three-state folding kinetics
-
Galzitskaya OV, Garbuzynskiy SO, Ivanlov DN, Finkelstein AV. Chain length is the main determinant of the folding rate for proteins with three-state folding kinetics. Proteins 2003;51:162-166.
-
(2003)
Proteins
, vol.51
, pp. 162-166
-
-
Galzitskaya, O.V.1
Garbuzynskiy, S.O.2
Ivanlov, D.N.3
Finkelstein, A.V.4
-
13
-
-
2942689229
-
Prediction of protein folding rates from the amino acid sequence-predicted secondary structure
-
Ivankov DN, Finkelstein AV. Prediction of protein folding rates from the amino acid sequence-predicted secondary structure. Proc Natl Acad Sci USA 2004;101:8942-8944.
-
(2004)
Proc Natl Acad Sci USA
, vol.101
, pp. 8942-8944
-
-
Ivankov, D.N.1
Finkelstein, A.V.2
-
14
-
-
33847367710
-
Secondary structure length as a determinant of folding rate of proteins with twoand three-state kinetics
-
Huang JT, Cheng JP, Chen H. Secondary structure length as a determinant of folding rate of proteins with twoand three-state kinetics. Proteins 2007;67:12-17.
-
(2007)
Proteins
, vol.67
, pp. 12-17
-
-
Huang, J.T.1
Cheng, J.P.2
Chen, H.3
-
16
-
-
0031815749
-
How do small single-domain proteins folds?
-
Jackson SE. How do small single-domain proteins folds? Fold Design 1998;3:R81-R91.
-
(1998)
Fold Design
, vol.3
-
-
Jackson, S.E.1
-
17
-
-
0021118508
-
Principles that determine the structure of proteins
-
Chothia C. Principles that determine the structure of proteins. Annu Rev Biochem 1984;53:537-572.
-
(1984)
Annu Rev Biochem
, vol.53
, pp. 537-572
-
-
Chothia, C.1
-
18
-
-
0031897962
-
Protein folding in the hydrophobic-hydrophilic (HP) model is NP-complete
-
Berger B, Leighton T. Protein folding in the hydrophobic-hydrophilic (HP) model is NP-complete. J Comput Biol 1998;5:27-40.
-
(1998)
J Comput Biol
, vol.5
, pp. 27-40
-
-
Berger, B.1
Leighton, T.2
-
19
-
-
0029002720
-
The hydrophobic effect in protein folding
-
Lins L, Brasseur R. The hydrophobic effect in protein folding. FASEB J 1995;9:535-540.
-
(1995)
FASEB J
, vol.9
, pp. 535-540
-
-
Lins, L.1
Brasseur, R.2
-
24
-
-
33847255036
-
K-Fold: A tool for the prediction of the protein folding kinetic order and rate
-
Capriotti E, Casadio R. K-Fold: a tool for the prediction of the protein folding kinetic order and rate. Bioinformatics 2007;23:385-386.
-
(2007)
Bioinformatics
, vol.23
, pp. 385-386
-
-
Capriotti, E.1
Casadio, R.2
-
25
-
-
34250194031
-
What determines protein folding type? An investigation of intrinsic structural properties and its implications for understanding folding mechanisms
-
Ma BG, Chen LL, Zhang HY. What determines protein folding type? An investigation of intrinsic structural properties and its implications for understanding folding mechanisms. J Mo Biol 2007;370:439-448.
-
(2007)
J Mo Biol
, vol.370
, pp. 439-448
-
-
Ma, B.G.1
Chen, L.L.2
Zhang, H.Y.3
-
26
-
-
0015859467
-
Principles that govern the folding of protein chains
-
Anfinsen CB. Principles that govern the folding of protein chains. Science 1973;181:223-230.
-
(1973)
Science
, vol.181
, pp. 223-230
-
-
Anfinsen, C.B.1
-
27
-
-
33747822326
-
FOLD-RATE: Prediction of protein folding rates from amino acid sequence
-
Gromiha MM, Thangakani AM, Selvara S. FOLD-RATE: prediction of protein folding rates from amino acid sequence. Nucl Acid Res 2006;34:W70-W74.
-
(2006)
Nucl Acid Res
, vol.34
-
-
Gromiha, M.M.1
Thangakani, A.M.2
Selvara, S.3
-
28
-
-
33846041078
-
The universal protein resource (UniProt)
-
UniProt Consortium
-
UniProt Consortium. The universal protein resource (UniProt). Nucl Acid Res 2007;35:D193-D197.
-
(2007)
Nucl Acid Res
, vol.35
-
-
-
29
-
-
33846036096
-
The worldwide Protein Data Bank (wwPDB): Ensuring a single, uniform archive of PDB data
-
Berman H, Henrick K, Nakamura H, Markley JL. The worldwide Protein Data Bank (wwPDB): ensuring a single, uniform archive of PDB data. Nucl Acid Res 2007;35:D301-D303.
-
(2007)
Nucl Acid Res
, vol.35
-
-
Berman, H.1
Henrick, K.2
Nakamura, H.3
Markley, J.L.4
-
31
-
-
0030305457
-
R: A language for data analysis and graphics
-
Ihaka R, Gentleman R. R: a language for data analysis and graphics. J Comput Graphical Stat 1996;5:299-314.
-
(1996)
J Comput Graphical Stat
, vol.5
, pp. 299-314
-
-
Ihaka, R.1
Gentleman, R.2
|