-
1
-
-
84962432238
-
Solvent effects on NMR isotropic shielding constants. A comparison between explicit polarizable discrete and continuum approaches
-
Aidas K, Mogelhoj A, Kjaer H, Nielsen CB, Mikkelsen KV, Ruud K, Christiansen O, Kongsted J (2007) Solvent effects on NMR isotropic shielding constants. A comparison between explicit polarizable discrete and continuum approaches. J Phys Chem A 111:4199-4210
-
(2007)
J Phys Chem A
, vol.111
, pp. 4199-4210
-
-
Aidas, K.1
Mogelhoj, A.2
Kjaer, H.3
Nielsen, C.B.4
Mikkelsen, K.V.5
Ruud, K.6
Christiansen, O.7
Kongsted, J.8
-
2
-
-
84961985847
-
Quantum calculation of molecular energies and energy gradients in solution by a conductor solvent model
-
Barone V, Cossi M (1998) Quantum calculation of molecular energies and energy gradients in solution by a conductor solvent model. J Phys Chem A 102:1995-2001
-
(1998)
J Phys Chem A
, vol.102
, pp. 1995-2001
-
-
Barone, V.1
Cossi, M.2
-
3
-
-
4243553426
-
Density-functional exchange-energy approximation with correct asymptotic-behavior
-
Becke AD (1988) Density-functional exchange-energy approximation with correct asymptotic-behavior. Phys Rev A 38:3098-3100
-
(1988)
Phys Rev A
, vol.38
, pp. 3098-3100
-
-
Becke, A.D.1
-
4
-
-
0000189651
-
Density-functional thermochemistry. 3. The role of exact exchange
-
Becke AD (1993) Density-functional thermochemistry. 3. the role of exact exchange. J Chem Phys 98:5648-5652
-
(1993)
J Chem Phys
, vol.98
, pp. 5648-5652
-
-
Becke, A.D.1
-
5
-
-
12344331148
-
Reliable NMR chemical shifts for molecules in solution by methods rooted in density functional theory
-
Benzi C, Crescenzi O, Pavone M, Barone V (2004) Reliable NMR chemical shifts for molecules in solution by methods rooted in density functional theory. Magn Reson Chem 42:S57-S67
-
(2004)
Magn Reson Chem
, vol.42
-
-
Benzi, C.1
Crescenzi, O.2
Pavone, M.3
Barone, V.4
-
7
-
-
0034684181
-
Measurement of proton, nitrogen, and carbonyl chemical shielding anisotropies in a protein dissolved in a dilute liquid crystalline phase
-
Cornilescu G, Bax A (2000) Measurement of proton, nitrogen, and carbonyl chemical shielding anisotropies in a protein dissolved in a dilute liquid crystalline phase. J Am Chem Soc 122:10143-10154
-
(2000)
J Am Chem Soc
, vol.122
, pp. 10143-10154
-
-
Cornilescu, G.1
Bax, A.2
-
8
-
-
0033003335
-
Protein backbone angle restraints from searching a database for chemical shift and sequence homology
-
Cornilescu G, Delaglio F, Bax A (1999) Protein backbone angle restraints from searching a database for chemical shift and sequence homology. J Biomol NMR 13:289-302
-
(1999)
J Biomol NMR
, vol.13
, pp. 289-302
-
-
Cornilescu, G.1
Delaglio, F.2
Bax, A.3
-
9
-
-
84962349001
-
Energies, structures, and electronic properties of molecules in solution with the C-PCM solvation model
-
Cossi M, Rega N, Scalmani G, Barone V (2003) Energies, structures, and electronic properties of molecules in solution with the C-PCM solvation model. J Comput Chem 24:669-681
-
(2003)
J Comput Chem
, vol.24
, pp. 669-681
-
-
Cossi, M.1
Rega, N.2
Scalmani, G.3
Barone, V.4
-
11
-
-
0027308278
-
Secondary and tertiary structural effects on protein nmr chemical-shifts-an abinitio approach
-
de Dios AC, Pearson JG, Oldfield E (1993) Secondary and tertiary structural effects on protein nmr chemical-shifts-an abinitio approach. Science 260:1491-1496
-
(1993)
Science
, vol.260
, pp. 1491-1496
-
-
de Dios, A.C.1
Pearson, J.G.2
Oldfield, E.3
-
12
-
-
0028080176
-
The 3Rd Igg-binding domain from streptococcal protein-G-an analysis by X-ray crystallography of the structure alone and in a complex with fab
-
Derrick JP, Wigley DB (1994) The 3Rd Igg-binding domain from streptococcal protein-G-an analysis by X-ray crystallography of the structure alone and in a complex with fab. J Mol Biol 243:906-918
-
(1994)
J Mol Biol
, vol.243
, pp. 906-918
-
-
Derrick, J.P.1
Wigley, D.B.2
-
13
-
-
40749094858
-
Self-consistent perturbation-theory of diamagnetism. 1. Gauge-invariant lcao method for nmr chemical-shifts
-
Ditchfield R (1974) Self-consistent perturbation-theory of diamagnetism. 1. Gauge-invariant lcao method for nmr chemical-shifts. Mol Phys 27:789-807
-
(1974)
Mol Phys
, vol.27
, pp. 789-807
-
-
Ditchfield, R.1
-
14
-
-
0038626673
-
-
Revision C.02, Gaussian, Inc., Wallingford, CT
-
Frisch MJ, Trucks GW, Schlegel HB, Scuseria GE, Robb MA, Cheeseman JR, Montgomery JA, Vreven T, Kudin KN, Burant JC, Millam JM, Iyengar SS, Tomasi J, Barone V, Mennucci B, Cossi M, Scalmani G, Rega N, Petersson GA, Nakatsuji H, Hada M, Ehara M, Toyota K, Fukuda R, Hasegawa J, Ishida M, Nakajima T, Honda Y, Kitao O, Nakai H, Klene M, Li X, Knox JE, Hratchian HP, Cross JB, Adamo C, Jaramillo J, Gomperts R, Stratmann RE, Yazyev O, Austin AJ, Cammi R, Pomelli C, Ochterski JW, Ayala PY, Morokuma K, Voth GA, Salvador P, Dannenberg JJ, Zakrzewski VG, Dapprich S, Daniels AD, Strain MC, Farkas O, Malick DK, Rabuck AD, Raghavachari K, Foresman JB, Ortiz JV, Cui Q, Baboul AG, Clifford S, Cioslowski J, Stefanov BB, Liu G, Liashenko A, Piskorz P, Komaromi I, Martin RL, Fox DJ, Keith T, Al-Laham MA, Peng CY, Nanayakkara A, Challacombe M, Gill PMW, Johnson B, Chen W, Wong MW, Gonzalez C, Pople JA (2004) Gaussian 03, Revision C.02, Gaussian, Inc., Wallingford, CT
-
(2004)
Gaussian 03
-
-
Frisch, M.J.1
Trucks, G.W.2
Schlegel, H.B.3
Scuseria, G.E.4
Robb, M.A.5
Cheeseman, J.R.6
Montgomery, J.A.7
Vreven, T.8
Kudin, K.N.9
Burant, J.C.10
Millam, J.M.11
Iyengar, S.S.12
Tomasi, J.13
Barone, V.14
Mennucci, B.15
Cossi, M.16
Scalmani, G.17
Rega, N.18
Petersson, G.A.19
Nakatsuji, H.20
Hada, M.21
Ehara, M.22
Toyota, K.23
Fukuda, R.24
Hasegawa, J.25
Ishida, M.26
Nakajima, T.27
Honda, Y.28
Kitao, O.29
Nakai, H.30
Klene, M.31
Li, X.32
Knox, J.E.33
Hratchian, H.P.34
Cross, J.B.35
Adamo, C.36
Jaramillo, J.37
Gomperts, R.38
Stratmann, R.E.39
Yazyev, O.40
Austin, A.J.41
Cammi, R.42
Pomelli, C.43
Ochterski, J.W.44
Ayala, P.Y.45
Morokuma, K.46
Voth, G.A.47
Salvador, P.48
Dannenberg, J.J.49
Zakrzewski, V.G.50
Dapprich, S.51
Daniels, A.D.52
Strain, M.C.53
Farkas, O.54
Malick, D.K.55
Rabuck, A.D.56
Raghavachari, K.57
Foresman, J.B.58
Ortiz, J.V.59
Cui, Q.60
Baboul, A.G.61
Clifford, S.62
Cioslowski, J.63
Stefanov, B.B.64
Liu, G.65
Liashenko, A.66
Piskorz, P.67
Komaromi, I.68
Martin, R.L.69
Fox, D.J.70
Keith, T.71
Al-Laham, M.A.72
Peng, C.Y.73
Nanayakkara, A.74
Challacombe, M.75
Gill, P.M.W.76
Johnson, B.77
Chen, W.78
Wong, M.W.79
Gonzalez, C.80
Pople, J.A.81
more..
-
15
-
-
0032587511
-
The effect of noncollinearity of N-15-H-1 dipolar and N-15 CSA tensors and rotational anisotropy on N-15 relaxation, CSA/dipolar cross-correlation, and TROSY
-
Fushman D, Cowburn D (1999) The effect of noncollinearity of N-15-H-1 dipolar and N-15 CSA tensors and rotational anisotropy on N-15 relaxation, CSA/dipolar cross-correlation, and TROSY. J Biomol NMR 13:139-147
-
(1999)
J Biomol NMR
, vol.13
, pp. 139-147
-
-
Fushman, D.1
Cowburn, D.2
-
16
-
-
0034927324
-
Nuclear magnetic resonance relaxation in determination of residue-specific N-15 chemical shift tensors in proteins in solution: Protein dynamics, structure, and applications of transverse relaxation optimized spectroscopy
-
In: James T, Schmitz U, Doetsch V (eds)
-
Fushman D, Cowburn D (2001) Nuclear magnetic resonance relaxation in determination of residue-specific N-15 chemical shift tensors in proteins in solution: Protein dynamics, structure, and applications of transverse relaxation optimized spectroscopy. In: James T, Schmitz U, Doetsch V (eds) Methods in enzymology. Nuclear magnetic resonance of biological macromolecules, Pt B 339:109-126
-
(2001)
Methods in Enzymology. Nuclear Magnetic Resonance of Biological Macromolecules
, vol.339
, Issue.PART B
, pp. 109-126
-
-
Fushman, D.1
Cowburn, D.2
-
17
-
-
0032576119
-
Direct measurement of N-15 chemical shift anisotropy in solution
-
Fushman D, Tjandra N, Cowburn D (1998) Direct measurement of N-15 chemical shift anisotropy in solution. J Am Chem Soc 120:10947-10952
-
(1998)
J Am Chem Soc
, vol.120
, pp. 10947-10952
-
-
Fushman, D.1
Tjandra, N.2
Cowburn, D.3
-
18
-
-
0033595535
-
15N chemical shift anisotropy and chemical exchange contributions
-
15N chemical shift anisotropy and chemical exchange contributions. J Am Chem Soc 121:8577-8582
-
(1999)
J Am Chem Soc
, vol.121
, pp. 8577-8582
-
-
Fushman, D.1
Tjandra, N.2
Cowburn, D.3
-
19
-
-
33745362452
-
15N relaxation measurements at several fields. Implications for backbone order parameters
-
15N relaxation measurements at several fields. Implications for backbone order parameters. J Am Chem Soc 128:7855-7870
-
(2006)
J Am Chem Soc
, vol.128
, pp. 7855-7870
-
-
Hall, J.B.1
Fushman, D.2
-
23
-
-
0035742784
-
Separating structure and dynamics in CSA/DD cross-correlated relaxation: A case study on trehalase and ubiquitin
-
Kover KE, Batta G (2001) Separating structure and dynamics in CSA/DD cross-correlated relaxation: A case study on trehalase and ubiquitin. J Magn Reson 150:137-146
-
(2001)
J Magn Reson
, vol.150
, pp. 137-146
-
-
Kover, K.E.1
Batta, G.2
-
24
-
-
0033520723
-
15N chemical shift anisotropy in Escherichia coli ribonuclease H in solution
-
15N chemical shift anisotropy in Escherichia coli ribonuclease H in solution. J Am Chem Soc 121:10119-10125
-
(1999)
J Am Chem Soc
, vol.121
, pp. 10119-10125
-
-
Kroenke, C.D.1
Rance, M.2
Palmer, A.G.3
-
25
-
-
0042494538
-
15N chemical shift anisotropy in a protein dissolved in a dilute liquid crystalline medium with the application of magic angle sample spinning
-
15N chemical shift anisotropy in a protein dissolved in a dilute liquid crystalline medium with the application of magic angle sample spinning. J Magn Reson 163:163-173
-
(2003)
J Magn Reson
, vol.163
, pp. 163-173
-
-
Kurita, J.1
Shimahara, H.2
Utsunomiya-Tate, N.3
Tate, S.4
-
26
-
-
0001204696
-
Ab initio studies of amide-N-15 chemical shifts in dipeptides: Applications to protein NMR spectroscopy
-
Le HB, Oldfield E (1996) Ab initio studies of amide-N-15 chemical shifts in dipeptides: Applications to protein NMR spectroscopy. J Phys Chem 100:16423-16428
-
(1996)
J Phys Chem
, vol.100
, pp. 16423-16428
-
-
Le, H.B.1
Oldfield, E.2
-
27
-
-
0345491105
-
Development of the colle-salvetti correlation-energy formula into a functional of the electron-density
-
Lee CT, Yang WT, Parr RG (1988) Development of the colle-salvetti correlation-energy formula into a functional of the electron-density. Phys Rev B 37:785-789
-
(1988)
Phys Rev B
, vol.37
, pp. 785-789
-
-
Lee, C.T.1
Yang, W.T.2
Parr, R.G.3
-
28
-
-
0041466424
-
15N chemical shift anisotropy in protein structure refinement and comparison with NH residual dipolar couplings
-
15N chemical shift anisotropy in protein structure refinement and comparison with NH residual dipolar couplings. J Magn Reson 164:171-176
-
(2003)
J Magn Reson
, vol.164
, pp. 171-176
-
-
Lipsitz, R.S.1
Tjandra, N.2
-
29
-
-
17744366182
-
Chemical shift anisotropy tensors of carbonyl, nitrogen, and amide proton nuclei in proteins through cross-correlated relaxation in NMR spectroscopy
-
Loth K, Pelupessy P, Bodenhausen G (2005) Chemical shift anisotropy tensors of carbonyl, nitrogen, and amide proton nuclei in proteins through cross-correlated relaxation in NMR spectroscopy. J Am Chem Soc 127:6062-6068
-
(2005)
J Am Chem Soc
, vol.127
, pp. 6062-6068
-
-
Loth, K.1
Pelupessy, P.2
Bodenhausen, G.3
-
30
-
-
0027503130
-
Orientational constraints as 3-dimensional structural constraints from chemical-shift anisotropy - The polypeptide backbone of gramicidin-a in a lipid bilayer
-
Mai W, Hu W, Wang C, Cross TA (1993) Orientational constraints as 3-dimensional structural constraints from chemical-shift anisotropy - the polypeptide backbone of gramicidin-a in a lipid bilayer. Protein Sci 2:532-542
-
(1993)
Protein Sci
, vol.2
, pp. 532-542
-
-
Mai, W.1
Hu, W.2
Wang, C.3
Cross, T.A.4
-
31
-
-
0142087939
-
An ab initio study of solvent polarity and hydrogen bonding effects on - The nitrogen NMR shieldings of N, N-dimethylacetamidine
-
Manalo MN, de Dios AC (2002) An ab initio study of solvent polarity and hydrogen bonding effects on - the nitrogen NMR shieldings of N, N-dimethylacetamidine. Magn Reson Chem 40:781-785
-
(2002)
Magn Reson Chem
, vol.40
, pp. 781-785
-
-
Manalo, M.N.1
de Dios, A.C.2
-
32
-
-
84962426744
-
17O nuclear shielding in water and in acetone
-
17O nuclear shielding in water and in acetone. J Phys Chem B 109:9830-9838
-
(2005)
J Phys Chem B
, vol.109
, pp. 9830-9838
-
-
Mennucci, B.1
Martinez, J.M.2
-
33
-
-
0035797751
-
Solvent effects on nuclear shieldings: Continuum or discrete solvation models to treat hydrogen bond and polarity effects?
-
Mennucci B, Martinez JM, Tomasi J (2001) Solvent effects on nuclear shieldings: Continuum or discrete solvation models to treat hydrogen bond and polarity effects? J Phys Chem A 105:7287-7296
-
(2001)
J Phys Chem A
, vol.105
, pp. 7287-7296
-
-
Mennucci, B.1
Martinez, J.M.2
Tomasi, J.3
-
35
-
-
0029283884
-
Chemical-shifts and 3-dimensional protein structures
-
Oldfield E (1995) Chemical-shifts and 3-dimensional protein structures. J Biomol NMR 5:217-225
-
(1995)
J Biomol NMR
, vol.5
, pp. 217-225
-
-
Oldfield, E.1
-
36
-
-
0036025444
-
Chemical shifts in amino acids, peptides, and proteins: From quantum chemistry to drug design
-
Oldfield E (2002) Chemical shifts in amino acids, peptides, and proteins: From quantum chemistry to drug design. Annu Rev Phys Chem 53:349-378
-
(2002)
Annu Rev Phys Chem
, vol.53
, pp. 349-378
-
-
Oldfield, E.1
-
38
-
-
3042524732
-
Molecular modeling of dipeptide and its analogous systems with water
-
Selvarengan P, Kolandaivel PG (2004) Molecular modeling of dipeptide and its analogous systems with water. J Mol Model 10:198-203
-
(2004)
J Mol Model
, vol.10
, pp. 198-203
-
-
Selvarengan, P.1
Kolandaivel, P.G.2
-
39
-
-
34547179849
-
Protein backbone chemical shifts predicted from searching a database for torsion angle and sequence homology
-
Shen Y, Bax A (2007) Protein backbone chemical shifts predicted from searching a database for torsion angle and sequence homology. J Biomol NMR 38:289-302
-
(2007)
J Biomol NMR
, vol.38
, pp. 289-302
-
-
Shen, Y.1
Bax, A.2
-
41
-
-
0029900275
-
15N chemical shift anisotropy from quantitative measurement of relaxation interference effects
-
15N chemical shift anisotropy from quantitative measurement of relaxation interference effects. J Am Chem Soc 118:6986-6991
-
(1996)
J Am Chem Soc
, vol.118
, pp. 6986-6991
-
-
Tjandra, N.1
Szabo, A.2
Bax, A.3
-
42
-
-
84961980477
-
Quantum mechanical continuum solvation models
-
Tomasi J, Mennucci B, Cammi R (2005) Quantum mechanical continuum solvation models. Chem Rev 105:2999-3093
-
(2005)
Chem Rev
, vol.105
, pp. 2999-3093
-
-
Tomasi, J.1
Mennucci, B.2
Cammi, R.3
-
44
-
-
0036129107
-
Probability-based protein secondary structure identification using combined NMR chemical-shift data
-
Wang YJ, Jardetzky O (2002) Probability-based protein secondary structure identification using combined NMR chemical-shift data. Protein Sci 11:852-861
-
(2002)
Protein Sci
, vol.11
, pp. 852-861
-
-
Wang, Y.J.1
Jardetzky, O.2
-
45
-
-
1442281993
-
15N chemical shifts in proteins using the preceding residue-specific individual shielding surfaces from phi, psi(-1), and chi(1) torsion angles
-
15N chemical shifts in proteins using the preceding residue-specific individual shielding surfaces from phi, psi(-1), and chi(1) torsion angles. J Biomol NMR 28:327-340
-
(2004)
J Biomol NMR
, vol.28
, pp. 327-340
-
-
Wang, Y.J.1
Jardetzky, O.2
-
46
-
-
0032454094
-
Protein chemical shift analysis: A practical guide
-
Wishart DS, Nip AM (1998) Protein chemical shift analysis: A practical guide. Biochem Cell Biol 76:153-163
-
(1998)
Biochem Cell Biol
, vol.76
, pp. 153-163
-
-
Wishart, D.S.1
Nip, A.M.2
-
47
-
-
0031302286
-
Automated H-1 and C-13 chemical shift prediction using the BioMagResBank
-
Wishart DS, Watson MS, Boyko RF, Sykes BD (1997) Automated H-1 and C-13 chemical shift prediction using the BioMagResBank. J Biomol NMR 10:329-336
-
(1997)
J Biomol NMR
, vol.10
, pp. 329-336
-
-
Wishart, D.S.1
Watson, M.S.2
Boyko, R.F.3
Sykes, B.D.4
-
48
-
-
11744305193
-
Efficient implementation of the gauge-independent atomic orbital method for NMR chemical-shift calculations
-
Wolinski K, Hinton JF, Pulay P (1990) Efficient implementation of the gauge-independent atomic orbital method for NMR chemical-shift calculations. J Am Chem Soc 112:8251-8260
-
(1990)
J Am Chem Soc
, vol.112
, pp. 8251-8260
-
-
Wolinski, K.1
Hinton, J.F.2
Pulay, P.3
-
49
-
-
0001125152
-
15N chemical-shift interaction tensors in a peptide-bond by 3-dimensional solid-state NMR-spectroscopy
-
15N chemical-shift interaction tensors in a peptide-bond by 3-dimensional solid-state NMR-spectroscopy. J Am Chem Soc 117:6148-6149
-
(1995)
J Am Chem Soc
, vol.117
, pp. 6148-6149
-
-
Wu, C.H.1
Ramamoorthy, A.2
Gierasch, L.M.3
Opella, S.J.4
-
50
-
-
33745465576
-
Determinations of N-15 chemical shift anisotropy magnitudes in a uniformly N-15, C-13-labeled microcrystalline protein by three-dimensional magic-angle spinning nuclear magnetic resonance spectroscopy
-
Wylie BJ, Franks WT, Rienstra CM (2006) Determinations of N-15 chemical shift anisotropy magnitudes in a uniformly N-15, C-13-labeled microcrystalline protein by three-dimensional magic-angle spinning nuclear magnetic resonance spectroscopy. J Phys Chem B 110:10926-10936
-
(2006)
J Phys Chem B
, vol.110
, pp. 10926-10936
-
-
Wylie, B.J.1
Franks, W.T.2
Rienstra, C.M.3
-
51
-
-
41449101270
-
Multidimensional solid state NMR of anisotropic interactions in peptides and proteins
-
Wylie BJ, Rienstra CM (2008) Multidimensional solid state NMR of anisotropic interactions in peptides and proteins. J Chem Phys 128:052207
-
(2008)
J Chem Phys
, vol.128
, pp. 052207
-
-
Wylie, B.J.1
Rienstra, C.M.2
-
52
-
-
0035544152
-
Automated prediction of N-15, C-13(alpha), C-13(beta) and C-13′ chemical shifts in proteins using a density functional database
-
Xu XP, Case DA (2001) Automated prediction of N-15, C-13(alpha), C-13(beta) and C-13′ chemical shifts in proteins using a density functional database. J Biomol NMR 21:321-333
-
(2001)
J Biomol NMR
, vol.21
, pp. 321-333
-
-
Xu, X.P.1
Case, D.A.2
-
53
-
-
0037114648
-
13C′ chemical shifts in peptides using density functional theory
-
13C′ chemical shifts in peptides using density functional theory. Biopolymers 65:408-423
-
(2002)
Biopolymers
, vol.65
, pp. 408-423
-
-
Xu, X.P.1
Case, Da.2
|