Exchangeability of mammalian DNA ligases between base excision repair pathways

Biochemistry

Volumn 43, Issue 40, 2004, Pages 12924-12930

  Sleeth, Kate M ^a,b   Robson, Robert L ^b   Dianov, Grigory L ^a  

^a MEDICAL RESEARCH COUNCIL   (United Kingdom)

^b UNIVERSITY OF READING   (United Kingdom)

Author keywords

[No Author keywords available]

Indexed keywords

ASSAYS; CELLS; ENZYMES; GENES; SUBSTRATES; X RAY ANALYSIS;

CELL EXTRACTS; DNA LIGASE; IN VITRO REPAIR;

DNA;

CELL EXTRACT; DNA LIGASE I; DNA LIGASE IIIALPHA; POLYDEOXYRIBONUCLEOTIDE SYNTHASE; UNCLASSIFIED DRUG;

ANIMAL CELL; ARTICLE; DNA REPAIR; EXCISION REPAIR; GENETIC COMPLEMENTATION; MAMMAL; NONHUMAN; PRIORITY JOURNAL; X RAY;

ANIMALS; BASE SEQUENCE; CELL LINE; CHO CELLS; CRICETINAE; DNA; DNA DAMAGE; DNA LIGASES; DNA REPAIR; DNA-BINDING PROTEINS; HUMANS; MOLECULAR SEQUENCE DATA; TIME FACTORS;

ANIMALIA; MAMMALIA;

EID: 4944235161     PISSN: 00062960     EISSN: None     Source Type: Journal    
DOI: 10.1021/bi0492612     Document Type: Article

References (35)

1. Aspinwall, R., Rothwell, D. G., Roldan-Arjona, T., Anselmino, C., Ward, C. J., Cheadle, J. P., Sampson, J. R., Lindahl, T., Harris, P. C., and Hickson, I. D. (1997) Cloning and characterization of a functional human homologue of Escherichia coli endonuclease III, Proc. Natl. Acad. Sci. U.S.A. 94, 109-114.
2. Lindahl, T., and Wood, R. D. (1999) Quality control by DNA repair, Science 286, 1897-1905.
3. Tomkinson, A. E., and Mackey, Z. B. (1998) Structure and function of mammalian DNA ligases, Mutat. Res. 407, 1-9.
4. Mackey, Z. B., Ramos, W., Levin, D. S., Walter, C. A., McCarrey, J. R., and Tomkinson, A. E. (1997) An alternative splicing event which occurs in mouse pachytene spermatocytes generates a form of DNA ligase III with distinct biochemical properties that may function in meiotic recombination, Mol. Cell. Biol. 17, 989-998.
5. Caldecott, K. W., McKeown, C. K., Tucker, J. D., Ljungquist, S., and Thompson, L. H. (1994) An interaction between the mammalian DNA repair protein XRCC1 and DNA ligase III, Mol. Cell. Biol. 14, 68-76.
6. Moore, D. J., Taylor, R. M., Clements, P., and Caldecott, K. W. (2000) Mutation of a BRCT domain selectively disrupts DNA single-strand break repair in noncycling Chinese hamster ovary cells, Proc. Natl. Acad. Sci. U.S.A. 97, 13649-13654.
7. Cappelli, E., Taylor, R., Cevasco, M., Abbondandolo, A., Caldecott, K., and Frosina, G. (1997) Involvement of XRCC1 and DNA ligase III gene products in DNA base excision repair, J. Biol. Chem. 272, 23970-23975.
8. Waga, S., and Stillman, B. (1998) DNA replication fork in eukaryotic cells, Annu. Rev. Biochem. 67, 721-751.
9. Aboussekhra, A., Biggerstaff, M., Shivji, M. K., Vilpo, J. A., Moncollin, V., Podust, V. N., Protic, M., Hubscher, U., Egly, J. M., and Wood, R. D. (1995) Mammalian DNA nucleotide excision repair reconstituted with purified protein components, Cell 80, 859-868.
10. Prasad, R., Singhal, R. K., Srivastava, D. K., Molina, J. T., Tomkinson, A. E., and Wilson, S. H. (1996) Specific interaction of DNA polymerase β and DNA ligase I in a multiprotein base excision repair complex from bovine testis, J. Biol. Chem. 271, 16000-16007.
11. Levin, D. S., Bai, W., Yao, N., O'Donnell, M., and Tomkinson, A. E. (1997) An interaction between DNA ligase I and proliferating cell nuclear antigen: Implication for Okazaki fragment synthesis and joining, Proc. Natl. Acad. Sci. U.S.A. 94, 12863-12868.
12. Barnes, D. E., Tomkinson, A. E., Lehmann, A. R., Webster, H. D. B., and Lindahl, T. (1992) Mutations in the DNA ligase I gene of an individual with immunodeficiencies and cellular hypersensitivity, Cell 69, 495-504.
13. Levin, D. S., McKenna, A. E., Motycka, T. A., Matsumoto, Y., and Tomkinson, A. E. (2000) Interaction between PCNA and DNA ligase 1 is critical for joining of Okazaki fragments and long-patch base-excision repair, Curr. Biol. 10, 919-922.
14. Ranalli, T. A., DeMott, M. S., and Bambara, R. A. (2002) Mechanism underlying replication protein A stimulation of DNA ligase I, J. Biol. Chem. 277, 1719-1727.
15. Dianov, G. L., Jensen, B. R., Kenny, M. K., and Bohr, V. A. (1999) Replication protein A stimulates proliferating cell nuclear antigen-dependent repair of abasic sites in DNA by human cell extracts, Biochemistry 38, 11021-11025.
16. DeMott, M. S., Zigman, S., and Bambara, R. A. (1998) Replication protein A stimulates long patch DNA base excision repair, J. Biol. Chem. 273, 27492-27498.
17. Dianova, I. I., Bohr, V. A., and Dianov, G. L. (2001) Interaction of human AP endonuclease 1 with flap endonuclease 1 and proliferating cell nuclear antigen involved in long-patch base excision repair, Biochemistry 40, 12639-12644.
18. Dianov, G., Bischoff, C., Piotrowski, J., and Bohr, V. A. (1998) Repair pathways for processing of 8-oxoguanine in DNA by mammalian cell extracts, J. Biol. Chem. 273, 33811-33816.
19. Allinson, S. L., Dianova, I. I., and Dianov, G. L. (2001) DNA polymerase β is the major dRP lyase involved in repair of oxidative base lesions in DNA by mammalian cell extracts, EMBO J. 20, 6919-6926.
20. Tanaka, M., Lai, J. S., and Herr, W. (1992) Promoter-selective activation domains in Oct-1 and Oct-2 direct differential activation of an SNRNA and messenger-RNA promoter, Cell 68, 755-767.
21. Vodenicharov, M. D., Sallmann, F. R., Satoh, M. S., and Poirier, G. G. (2000) Base excision repair is efficient in cells lacking poly-(ADP-ribose) polymerase 1, Nucleic Acids Res. 28, 3887-3896.
22. Dianov, G., Price, A., and Lindahl, T. (1992) Generation of singlenucleotide repair patches following excision of uracil residues from DNA, Mol. Cell. Biol. 12, 1605-1612.
23. Klungland, A., and Lindahl, T. (1997) Second pathway for completion of human DNA base excision-repair: Reconstitution with purified proteins and requirement for DNase IV (FEN1), EMBO J. 16, 3341-3348.
24. Dianov, G. L. (2003) Monitoring base excision repair by in vitro assays, Toxicology 193, 35-41.
25. Pascucci, B., Stucki, M., Jonsson, Z. O., Dogliotti, E., and Hubsher, U. (1999) Long patch base excision repair with purified proteins, J. Biol. Chem. 274, 33696-33702.
26. Whitehouse, C. J., Taylor, R. M., Thistlethwaite, A., Zhang, H., Karimi-Busheri, F., Lasko, D. D., Weinfeld, M., and Caldecott, K. W. (2001) XRCC1 stimulates human polynucleotide kinase activity at damaged DNA termini and accelerates DNA single-strand break repair, Cell 104, 107-117.
27. Nealon, K., Nicholl, I. D., and Kenny, M. K. (1996) Characterization of the DNA polymerase requirement of human base excision repair, Nucl. Acids Res. 24, 3763-3770.
28. Satoh, M. S., and Lindahl, T. (1992) Role of poly(ADP-ribose) formation in DNA repair, Nature 356, 356-358.
29. Matsumoto, Y., and Kim, K. (1995) Excision of deoxyribose phosphate residues by DNA polymerase β during DNA repair, Science 269, 699-702.
30. Leppard, J. B., Dong, Z., Mackey, Z. B., and Tomkinson, A. E. (2003) Physical and functional interaction between DNA ligase IIIα and poly(ADP-ribose) polymerase 1 in DNA single-strand break repair, Mol. Cell Biol. 23, 5919-5927.
31. Masson, M., Niedergang, C., Schreiber, V., Muller, S., Menissierde Murcia, J., and de Murcia, G. (1998) XRCC1 is specifically associated with poly(ADP-ribose) polymerase and negatively regulates its activity following DNA damage, Mol. Cell. Biol. 18, 3563-3571.
32. Ho, E. L., and Satoh, M. S. (2003) Repair of single-strand DNA interruptions by redundant pathways and its implication in cellular sensitivity to DNA-damaging agents, Nucleic Acids Res. 31, 7032-7040.
33. Dimitriadis, E. K., Prasad, R., Vaske, M. K., Chen, L., Tomkinson, A. E., Lewis, M. S., and Wilson, S. H. (1998) Thermodynamics of human DNA ligase I trimerization and association with DNA polymerase β, J. Biol. Chem. 273, 20540-20550.
34. Tebbs, R. S., Flannery, M. L., Meneses, J. J., Hartmann, A., Tucker, J. D., Thompson, L. H., Cleaver, J. E., and Pedersen, R. A. (1999) Requirement for the Xrcc1 DNA base excision repair gene during early mouse development, Dev. Biol. 208, 513-529.
35. Fan, J., Otterlei, M., Wong, H. K., Tomkinson, A. E., and Wilson, D. M., III (2004) XRCC1 co-localizes and physically interacts with PCNA, Nucleic Acids Res. 32, 2193-2201.