-
1
-
-
0027434731
-
Covalently immobilized DNA plate for luminometric DNA - DNA hybridization to identify viridans streptococci in under 2h
-
Adnan S, Li N, Miura H, Hashimoto Y, Yamamoto H, Ezaki T. (1993). Covalently immobilized DNA plate for luminometric DNA - DNA hybridization to identify viridans streptococci in under 2h. FEMS Microbiol Lett 106: 139-142.
-
(1993)
FEMS Microbiol Lett
, vol.106
, pp. 139-142
-
-
Adnan, S.1
Li, N.2
Miura, H.3
Hashimoto, Y.4
Yamamoto, H.5
Ezaki, T.6
-
2
-
-
0026555817
-
Diversity among fibrobacter isolates - towards a phylogenetic classification
-
Amann RI, Lin CH, Key R, Montgomery L, Stahl DA. (1992). Diversity among fibrobacter isolates - towards a phylogenetic classification. Syst Appl Microbiol 15: 23-31.
-
(1992)
Syst Appl Microbiol
, vol.15
, pp. 23-31
-
-
Amann, R.I.1
Lin, C.H.2
Key, R.3
Montgomery, L.4
Stahl, D.A.5
-
3
-
-
0033612136
-
Comparative genomics of BCG vaccines by whole-genome DNA microarray
-
Behr MA, Wilson MA, Gill WP, Salamon H, Schoolnik GK, Rane S et al. (1999). Comparative genomics of BCG vaccines by whole-genome DNA microarray. Science 284: 1520-1523.
-
(1999)
Science
, vol.284
, pp. 1520-1523
-
-
Behr, M.A.1
Wilson, M.A.2
Gill, W.P.3
Salamon, H.4
Schoolnik, G.K.5
Rane, S.6
-
4
-
-
0038302040
-
Development and validation of a diagnostic microbial microarray for methanotrophs
-
Bodrossy L, Stralis-Pavese N, Murrell JC, Radajewski S, Weilharter A, Sessitsch A. (2003). Development and validation of a diagnostic microbial microarray for methanotrophs. Environ Microbiol 5: 566-582.
-
(2003)
Environ Microbiol
, vol.5
, pp. 566-582
-
-
Bodrossy, L.1
Stralis-Pavese, N.2
Murrell, J.C.3
Radajewski, S.4
Weilharter, A.5
Sessitsch, A.6
-
5
-
-
0034016758
-
Nitrite reductase genes (nirK and nirS) as functional markers to investigate diversity of denitrifying bacteria in Pacific northwest marine sediment communities
-
Braker G, Zhou JZ, Wu LY, Devol AH, Tiedje JM. (2000). Nitrite reductase genes (nirK and nirS) as functional markers to investigate diversity of denitrifying bacteria in Pacific northwest marine sediment communities. Appl Environ Microbiol 66: 2096-2104.
-
(2000)
Appl Environ Microbiol
, vol.66
, pp. 2096-2104
-
-
Braker, G.1
Zhou, J.Z.2
Wu, L.Y.3
Devol, A.H.4
Tiedje, J.M.5
-
7
-
-
0032082048
-
Genomics and computational molecular biology
-
Brutlag DL. (1998). Genomics and computational molecular biology. Curr Opin Microbiol 1: 340-345.
-
(1998)
Curr Opin Microbiol
, vol.1
, pp. 340-345
-
-
Brutlag, D.L.1
-
8
-
-
0034106947
-
Non-radioactive dot-blot DNA reassociation for unequivocal yeast identification
-
Cardinali G, Liti G, Martini A. (2000). Non-radioactive dot-blot DNA reassociation for unequivocal yeast identification. Int J Syst Evol Microbiol 50: 931-936.
-
(2000)
Int J Syst Evol Microbiol
, vol.50
, pp. 931-936
-
-
Cardinali, G.1
Liti, G.2
Martini, A.3
-
9
-
-
0035433897
-
Bacterial species determination from DNA - DNA hybridization by using genome fragments and DNA microarrays
-
Cho JC, Tiedje JM. (2001). Bacterial species determination from DNA - DNA hybridization by using genome fragments and DNA microarrays. Appl Environ Microbiol 67: 3677-3682.
-
(2001)
Appl Environ Microbiol
, vol.67
, pp. 3677-3682
-
-
Cho, J.C.1
Tiedje, J.M.2
-
10
-
-
3843102542
-
Comparative genetic diversity of Pseudomonas stutzeri genomovars, clonal structure, and phylogeny of the species
-
Cladera AM, Bennasar A, Barcelo M, Lalucat J, Garcia-Valdes E. (2004). Comparative genetic diversity of Pseudomonas stutzeri genomovars, clonal structure, and phylogeny of the species. J Bacteriol 186: 5239-5248.
-
(2004)
J Bacteriol
, vol.186
, pp. 5239-5248
-
-
Cladera, A.M.1
Bennasar, A.2
Barcelo, M.3
Lalucat, J.4
Garcia-Valdes, E.5
-
11
-
-
0036407157
-
What are bacterial species?
-
Cohan FM. (2002). What are bacterial species? Annu Rev Microbiol 56: 457-487.
-
(2002)
Annu Rev Microbiol
, vol.56
, pp. 457-487
-
-
Cohan, F.M.1
-
12
-
-
0015802672
-
Use of a singlestrand specific nuclease for analysis of bacterial and plasmid deoxyribonucleic acid homoduplexes and heteroduplexes
-
Crosa JH, Brenner DJ, Falkow S. (1973). Use of a singlestrand specific nuclease for analysis of bacterial and plasmid deoxyribonucleic acid homoduplexes and heteroduplexes. J Bacteriol 115: 904-911.
-
(1973)
J Bacteriol
, vol.115
, pp. 904-911
-
-
Crosa, J.H.1
Brenner, D.J.2
Falkow, S.3
-
13
-
-
0014913051
-
Evaluation of membrane filter methods for DNA - DNA hybridization
-
De Lay J, Tijtgat R. (1970). Evaluation of membrane filter methods for DNA - DNA hybridization. Antonie Van Leeuwenhoek J Microbiol 36: 461-474.
-
(1970)
Antonie Van Leeuwenhoek J Microbiol
, vol.36
, pp. 461-474
-
-
De Lay, J.1
Tijtgat, R.2
-
14
-
-
0030669030
-
Exploring the metabolic and genetic control of gene expression on a genomic scale
-
DeRisi JL, Iyer VR, Brown PO. (1997). Exploring the metabolic and genetic control of gene expression on a genomic scale. Science 278: 680-686.
-
(1997)
Science
, vol.278
, pp. 680-686
-
-
DeRisi, J.L.1
Iyer, V.R.2
Brown, P.O.3
-
15
-
-
0035318378
-
Genomic interspecies microarray hybridization: Rapid discovery of three thousand genes in the maize endophyte, Klebsiella pneumoniae 342, by microarray hybridization with Escherichia coli K-12 open reading frames
-
Dong YM, Glasner JD, Blattner FR, Triplett EW. (2001). Genomic interspecies microarray hybridization: rapid discovery of three thousand genes in the maize endophyte, Klebsiella pneumoniae 342, by microarray hybridization with Escherichia coli K-12 open reading frames. Appl Environ Microbiol 67: 1911-1921.
-
(2001)
Appl Environ Microbiol
, vol.67
, pp. 1911-1921
-
-
Dong, Y.M.1
Glasner, J.D.2
Blattner, F.R.3
Triplett, E.W.4
-
17
-
-
0024358339
-
Fluorometric deoxyribonucleic acid deoxyribonucleic acid hybridization in microdilution wells as an alternative to membrane-filter hybridization in which radioisotopes are used to determine genetic relatedness among bacterial strains
-
Ezaki T, Hashimoto Y, Yabuuchi E. (1989). Fluorometric deoxyribonucleic acid deoxyribonucleic acid hybridization in microdilution wells as an alternative to membrane-filter hybridization in which radioisotopes are used to determine genetic relatedness among bacterial strains. Int J Syst Bacteriol 39: 224-229.
-
(1989)
Int J Syst Bacteriol
, vol.39
, pp. 224-229
-
-
Ezaki, T.1
Hashimoto, Y.2
Yabuuchi, E.3
-
18
-
-
2942681172
-
Identification of planctomycetes with order-, genus-, and strain-specific 16S rRNAtargeted probes
-
Gade D, Schlesner H, Glockner FO, Amann R, Pfeiffer S, Thomm A. (2004). Identification of planctomycetes with order-, genus-, and strain-specific 16S rRNAtargeted probes. Microb Ecol 47: 243-251.
-
(2004)
Microb Ecol
, vol.47
, pp. 243-251
-
-
Gade, D.1
Schlesner, H.2
Glockner, F.O.3
Amann, R.4
Pfeiffer, S.5
Thomm, A.6
-
19
-
-
7744230895
-
Global transcriptome analysis of the heat shock response of Shewanella oneidensis
-
Gao HC, Wang Y, Liu XD, Yan TF, Wu LY, Alm E et al. (2004). Global transcriptome analysis of the heat shock response of Shewanella oneidensis. J Bacteriol 186: 7796-7803.
-
(2004)
J Bacteriol
, vol.186
, pp. 7796-7803
-
-
Gao, H.C.1
Wang, Y.2
Liu, X.D.3
Yan, T.F.4
Wu, L.Y.5
Alm, E.6
-
20
-
-
19544377552
-
Taxonomic outline of the Prokaryotes
-
Boone DR, Castenholz RW, Garrity GM eds, Springer: Berlin, Heidelberg, New York, pp
-
Garrity GM, Bell JA, Lilburn TG. (2004). Taxonomic outline of the Prokaryotes. In: Boone DR, Castenholz RW, Garrity GM (eds). Bergey's Manual of Systematic Bacteriology. Springer: Berlin, Heidelberg, New York, pp 163-164.
-
(2004)
Bergey's Manual of Systematic Bacteriology
, pp. 163-164
-
-
Garrity, G.M.1
Bell, J.A.2
Lilburn, T.G.3
-
21
-
-
0032434673
-
Evaluation of a microplate DNA - DNA hybridization method compared with the initial renaturation method
-
Goris J, Suzuki K, De Vos P, Nakase T, Kersters K. (1998). Evaluation of a microplate DNA - DNA hybridization method compared with the initial renaturation method. Can J Microbiol 44: 1148-1153.
-
(1998)
Can J Microbiol
, vol.44
, pp. 1148-1153
-
-
Goris, J.1
Suzuki, K.2
De Vos, P.3
Nakase, T.4
Kersters, K.5
-
22
-
-
84900223105
-
Bacterial phylogeny reconstruction from molecular sequences
-
Stackebrandt E ed, Springer: New York, pp
-
Harayama S, Kasai H. (2006). Bacterial phylogeny reconstruction from molecular sequences. In: Stackebrandt E (ed). Molecular Identification, Systematics, and Population Structure of Prokaryotes. Springer: New York, pp 105-140.
-
(2006)
Molecular Identification, Systematics, and Population Structure of Prokaryotes
, pp. 105-140
-
-
Harayama, S.1
Kasai, H.2
-
23
-
-
5444244948
-
Comparison of 16S rRNA, nifD, recA, gyrB, rpoB and fusA genes within the family Geobacteraceae fam
-
Holmes DE, Nevin KP, Lovley DR. (2004). Comparison of 16S rRNA, nifD, recA, gyrB, rpoB and fusA genes within the family Geobacteraceae fam. nov. Int J Syst Evol Microbiol 54: 1591-1599.
-
(2004)
Int J Syst Evol Microbiol
, vol.54
, pp. 1591-1599
-
-
Holmes, D.E.1
Nevin, K.P.2
Lovley, D.R.3
-
24
-
-
0035053858
-
Comparing genomes within the species Mycobacterium tuberculosis
-
Kato-Maeda M, Rhee JT, Gingeras TR, Salamon H, Drenkow J, Smittipat N et al. (2001). Comparing genomes within the species Mycobacterium tuberculosis. Genome Res 11: 547-554.
-
(2001)
Genome Res
, vol.11
, pp. 547-554
-
-
Kato-Maeda, M.1
Rhee, J.T.2
Gingeras, T.R.3
Salamon, H.4
Drenkow, J.5
Smittipat, N.6
-
25
-
-
0000068374
-
A method of colorimetric DNA - DNA hybridization in microplates with covalently immobilized DNA for identification of Aeromonas spp
-
Kaznowski A. (1995). A method of colorimetric DNA - DNA hybridization in microplates with covalently immobilized DNA for identification of Aeromonas spp. Med Microbiol Lett 4: 362-369.
-
(1995)
Med Microbiol Lett
, vol.4
, pp. 362-369
-
-
Kaznowski, A.1
-
26
-
-
1542327668
-
Trends between gene content and genome size in prokaryotic species with larger genomes
-
Konstantinidis KT, Tiedje JM. (2004). Trends between gene content and genome size in prokaryotic species with larger genomes. Proc Natl Acad Sci USA 101: 3160-3165.
-
(2004)
Proc Natl Acad Sci USA
, vol.101
, pp. 3160-3165
-
-
Konstantinidis, K.T.1
Tiedje, J.M.2
-
27
-
-
35748954014
-
Prokaryotic taxonomy and phylogeny in the genomic era: Advancements and challenges ahead
-
Konstantinidis KT, Tiedje JM. (2007). Prokaryotic taxonomy and phylogeny in the genomic era: advancements and challenges ahead. Curr Opin Microbiol 10: 504-509.
-
(2007)
Curr Opin Microbiol
, vol.10
, pp. 504-509
-
-
Konstantinidis, K.T.1
Tiedje, J.M.2
-
28
-
-
33750982618
-
MEGA3: An integrated software for molecular evolutionary genetic analysis and sequence alignment
-
Kumar S, Tamura K, Nei M. (2003). MEGA3: an integrated software for molecular evolutionary genetic analysis and sequence alignment. Integr Comp Biol 43: 947.
-
(2003)
Integr Comp Biol
, vol.43
, pp. 947
-
-
Kumar, S.1
Tamura, K.2
Nei, M.3
-
29
-
-
0037388447
-
Transcriptome dynamics of Deinococcus radiodurans recovering from ionizing radiation
-
Liu YQ, Zhou JZ, Omelchenko MV, Beliaev AS, Venkateswaran A, Stair J et al. (2003). Transcriptome dynamics of Deinococcus radiodurans recovering from ionizing radiation. Proc Natl Acad Sci USA 100: 4191-4196.
-
(2003)
Proc Natl Acad Sci USA
, vol.100
, pp. 4191-4196
-
-
Liu, Y.Q.1
Zhou, J.Z.2
Omelchenko, M.V.3
Beliaev, A.S.4
Venkateswaran, A.5
Stair, J.6
-
30
-
-
10544256600
-
Expression monitoring by hybridization to high-density oligonucleotide arrays
-
Lockhart DJ, Dong HL, Byrne MC, Follettie MT, Gallo MV, Chee MS et al. (1996). Expression monitoring by hybridization to high-density oligonucleotide arrays. Nat Biotechnol 14: 1675-1680.
-
(1996)
Nat Biotechnol
, vol.14
, pp. 1675-1680
-
-
Lockhart, D.J.1
Dong, H.L.2
Byrne, M.C.3
Follettie, M.T.4
Gallo, M.V.5
Chee, M.S.6
-
31
-
-
0036795787
-
Oligonucleotide microarray for 16S rRNA gene-based detection of all recognized lineages of sulfate-reducing prokaryotes in the environment
-
Loy A, Lehner A, Lee N, Adamczyk J, Meier H, Ernst J et al. (2002). Oligonucleotide microarray for 16S rRNA gene-based detection of all recognized lineages of sulfate-reducing prokaryotes in the environment. Appl Environ Microbiol 68: 5064-5081.
-
(2002)
Appl Environ Microbiol
, vol.68
, pp. 5064-5081
-
-
Loy, A.1
Lehner, A.2
Lee, N.3
Adamczyk, J.4
Meier, H.5
Ernst, J.6
-
32
-
-
33744775938
-
Phylogenetic study and multiplex PCR-based detection of Burkholderia plantarii, Burkholderia glumae and Burkholderia gladioli using gyrB and rpoD sequences
-
Maeda Y, Shinohara H, Kiba A, Ohnishi K, Furuya N, Kawamura Y et al. (2006). Phylogenetic study and multiplex PCR-based detection of Burkholderia plantarii, Burkholderia glumae and Burkholderia gladioli using gyrB and rpoD sequences. Int J Syst Evol Microbiol 56: 1031-1038.
-
(2006)
Int J Syst Evol Microbiol
, vol.56
, pp. 1031-1038
-
-
Maeda, Y.1
Shinohara, H.2
Kiba, A.3
Ohnishi, K.4
Furuya, N.5
Kawamura, Y.6
-
33
-
-
9944235795
-
Development of a fast DNA - DNA hybridization method based on melting profiles in microplates
-
Mehlen A, Goeldner M, Ried S, Stindl S, Ludwig W, Schleifer KH. (2004). Development of a fast DNA - DNA hybridization method based on melting profiles in microplates. Syst Appl Microbiol 27: 689-695.
-
(2004)
Syst Appl Microbiol
, vol.27
, pp. 689-695
-
-
Mehlen, A.1
Goeldner, M.2
Ried, S.3
Stindl, S.4
Ludwig, W.5
Schleifer, K.H.6
-
34
-
-
0035859896
-
DNA/DNA hybridization to microarrays reveals gene-specific differences between closely related microbial genomes
-
Murray AE, Lies D, Li G, Nealson K, Zhou J, Tiedje JM. (2001). DNA/DNA hybridization to microarrays reveals gene-specific differences between closely related microbial genomes. Proc Natl Acad Sci USA 98: 9853-9858.
-
(2001)
Proc Natl Acad Sci USA
, vol.98
, pp. 9853-9858
-
-
Murray, A.E.1
Lies, D.2
Li, G.3
Nealson, K.4
Zhou, J.5
Tiedje, J.M.6
-
35
-
-
0014731063
-
Taxonomy of aerobic pseudomonads-properties of Pseudomonas-stutzeri group
-
Palleron NJ, Doudorof M, Stanier RY, Solanes RE, Mandel M. (1970). Taxonomy of aerobic pseudomonads-properties of Pseudomonas-stutzeri group. J Gen Microbiol 60: 215-231.
-
(1970)
J Gen Microbiol
, vol.60
, pp. 215-231
-
-
Palleron, N.J.1
Doudorof, M.2
Stanier, R.Y.3
Solanes, R.E.4
Mandel, M.5
-
36
-
-
0018867150
-
Use of deae-cellulose filters in the sl nuclease method for bacterial deoxyribonucleic-acid hybridization
-
Popoff M, Coynault C. (1980). Use of deae-cellulose filters in the sl nuclease method for bacterial deoxyribonucleic-acid hybridization. Ann Microbiol A 131: 151-155.
-
(1980)
Ann Microbiol A
, vol.131
, pp. 151-155
-
-
Popoff, M.1
Coynault, C.2
-
37
-
-
0034068106
-
Comparison of AFLP and rep-PCR genomic fingerprinting with DNA - DNA homology studies: Xanthomonas as a model system
-
Rademaker JLW, Hoste B, Louws FJ, Kersters K, Swings J, Vauterin L et al. (2000). Comparison of AFLP and rep-PCR genomic fingerprinting with DNA - DNA homology studies: Xanthomonas as a model system. Int J Syst Evol Microbiol 50: 665-677.
-
(2000)
Int J Syst Evol Microbiol
, vol.50
, pp. 665-677
-
-
Rademaker, J.L.W.1
Hoste, B.2
Louws, F.J.3
Kersters, K.4
Swings, J.5
Vauterin, L.6
-
38
-
-
3242773890
-
Detection of genes involved in biodegradation and biotransformation in microbial communities by using 50-mer oligonucleotide microarrays
-
Rhee SK, Liu XD, Wu LY, Chong SC, Wan XF, Zhou JZ. (2004). Detection of genes involved in biodegradation and biotransformation in microbial communities by using 50-mer oligonucleotide microarrays. Appl Environ Microbiol 70: 4303-4317.
-
(2004)
Appl Environ Microbiol
, vol.70
, pp. 4303-4317
-
-
Rhee, S.K.1
Liu, X.D.2
Wu, L.Y.3
Chong, S.C.4
Wan, X.F.5
Zhou, J.Z.6
-
39
-
-
0038154070
-
Detection and diversity assessment of Xylella fastidiosa in field-collected plant and insect samples by using 16S rRNA and gyrB sequences
-
Rodrigues JLM, Silva-Stenico ME, Gomes JE, Lopes JRS, Tsai SM. (2003). Detection and diversity assessment of Xylella fastidiosa in field-collected plant and insect samples by using 16S rRNA and gyrB sequences. Appl Environ Microbiol 69: 4249-4255.
-
(2003)
Appl Environ Microbiol
, vol.69
, pp. 4249-4255
-
-
Rodrigues, J.L.M.1
Silva-Stenico, M.E.2
Gomes, J.E.3
Lopes, J.R.S.4
Tsai, S.M.5
-
41
-
-
84900241743
-
DNA - DNA reassociation methods applied to microbial taxonomy and their critical evaluation
-
Stackebrandt E ed, Springer Verlag: Berlin, Heidelberg, New York, pp
-
Rossello-Mora R. (2006). DNA - DNA reassociation methods applied to microbial taxonomy and their critical evaluation. In: Stackebrandt E (ed). Molecular Identification, Systematics, and Population Structure of Prokaryotes. Springer Verlag: Berlin, Heidelberg, New York, pp 23-50.
-
(2006)
Molecular Identification, Systematics, and Population Structure of Prokaryotes
, pp. 23-50
-
-
Rossello-Mora, R.1
-
43
-
-
0034687702
-
A whole-genome microarray reveals genetic diversity among Helicobacter pylori strains
-
Salama N, Guillemin K, McDaniel TK, Sherlock G, Tompkins L, Falkow S. (2000). A whole-genome microarray reveals genetic diversity among Helicobacter pylori strains. Proc Natl Acad Sci USA 97: 14668-14673.
-
(2000)
Proc Natl Acad Sci USA
, vol.97
, pp. 14668-14673
-
-
Salama, N.1
Guillemin, K.2
McDaniel, T.K.3
Sherlock, G.4
Tompkins, L.5
Falkow, S.6
-
44
-
-
36148940946
-
Design and use of functional gene microarrays (FGAs) for the characterization of microbial communities
-
Savidge T, Pothulakis C eds, Elsevier Academic Press: Amsterdam, pp
-
Schadt CW, Liebich J, Chong SC, Gentry TJ, He ZL, Pan HB et al. (2005). Design and use of functional gene microarrays (FGAs) for the characterization of microbial communities. In: Savidge T, Pothulakis C (eds). Microbial Imaging. Elsevier Academic Press: Amsterdam, pp 331-368.
-
(2005)
Microbial Imaging
, pp. 331-368
-
-
Schadt, C.W.1
Liebich, J.2
Chong, S.C.3
Gentry, T.J.4
He, Z.L.5
Pan, H.B.6
-
45
-
-
0001774143
-
Technology standards for microarray research
-
Schena M ed, Eaton Publishing: Natick, pp
-
Schena M, Davis RW. (2000). Technology standards for microarray research. In: Schena M (ed). Microarray Biochip Technology. Eaton Publishing: Natick, pp 301-306.
-
(2000)
Microarray Biochip Technology
, pp. 301-306
-
-
Schena, M.1
Davis, R.W.2
-
46
-
-
0028806048
-
Quantitative monitoring of gene-expression patterns with a complementary-DNA Microarray
-
Schena M, Shalon D, Davis RW, Brown PO. (1995). Quantitative monitoring of gene-expression patterns with a complementary-DNA Microarray. Science 270: 467-470.
-
(1995)
Science
, vol.270
, pp. 467-470
-
-
Schena, M.1
Shalon, D.2
Davis, R.W.3
Brown, P.O.4
-
47
-
-
0029748326
-
Parallel human genome analysis: Microarray-based expression monitoring of 1000 genes
-
Schena M, Shalon D, Heller R, Chai A, Brown PO, Davis RW. (1996). Parallel human genome analysis: microarray-based expression monitoring of 1000 genes. Proc Natl Acad Sci USA 93: 10614-10619.
-
(1996)
Proc Natl Acad Sci USA
, vol.93
, pp. 10614-10619
-
-
Schena, M.1
Shalon, D.2
Heller, R.3
Chai, A.4
Brown, P.O.5
Davis, R.W.6
-
48
-
-
0035200605
-
Pseudomonas sp strain KC represents a new genomovar within Pseudomonas stutzeri
-
Sepulveda-Torres LD, Zhou JZ, Guasp C, Lalucat J, Knaebel D, Plank JL et al. (2001). Pseudomonas sp strain KC represents a new genomovar within Pseudomonas stutzeri. Int J Syst Evol Microbiol 51: 2013-2019.
-
(2001)
Int J Syst Evol Microbiol
, vol.51
, pp. 2013-2019
-
-
Sepulveda-Torres, L.D.1
Zhou, J.Z.2
Guasp, C.3
Lalucat, J.4
Knaebel, D.5
Plank, J.L.6
-
49
-
-
0032989234
-
Taxonomic characterization of denitrifying bacteria that degrade aromatic compounds and description of Azoarcus toluvorans sp nov and Azoarcus toluclasticus sp nov
-
Song B, Haggblom MM, Zhou JZ, Tiedje JM, Palleroni NJ. (1999). Taxonomic characterization of denitrifying bacteria that degrade aromatic compounds and description of Azoarcus toluvorans sp nov and Azoarcus toluclasticus sp nov. Int J Syst Bacteriol 49: 1129-1140.
-
(1999)
Int J Syst Bacteriol
, vol.49
, pp. 1129-1140
-
-
Song, B.1
Haggblom, M.M.2
Zhou, J.Z.3
Tiedje, J.M.4
Palleroni, N.J.5
-
51
-
-
0035989633
-
Report of the ad hoc committee for the re-evaluation of the species definition in bacteriology
-
Stackebrandt E, Frederiksen W, Garrity GM, Grimont PAD, Kampfer P, Maiden MCJ et al. (2002). Report of the ad hoc committee for the re-evaluation of the species definition in bacteriology. Int J Syst Evol Microbiol 52: 1043-1047.
-
(2002)
Int J Syst Evol Microbiol
, vol.52
, pp. 1043-1047
-
-
Stackebrandt, E.1
Frederiksen, W.2
Garrity, G.M.3
Grimont, P.A.D.4
Kampfer, P.5
Maiden, M.C.J.6
-
52
-
-
0028028182
-
A Place for DNA - DNA reassociation and 16 s ribosomal-RNA sequence-analysis in the present species definition in bacteriology
-
Stackebrandt E, Goebel BM. (1994). A Place for DNA - DNA reassociation and 16 s ribosomal-RNA sequence-analysis in the present species definition in bacteriology. Int J Syst Bacteriol 44: 846-849.
-
(1994)
Int J Syst Bacteriol
, vol.44
, pp. 846-849
-
-
Stackebrandt, E.1
Goebel, B.M.2
-
53
-
-
13944281014
-
Metal reduction at cold temperatures by Shewanella isolates from various marine environments
-
Stapleton RD, Sabree ZL, Palumbo AV, Moyer CL, Devol AH, Roh Y et al. (2005). Metal reduction at cold temperatures by Shewanella isolates from various marine environments. Aquat Microb Ecol 38: 81-91.
-
(2005)
Aquat Microb Ecol
, vol.38
, pp. 81-91
-
-
Stapleton, R.D.1
Sabree, Z.L.2
Palumbo, A.V.3
Moyer, C.L.4
Devol, A.H.5
Roh, Y.6
-
54
-
-
0027968068
-
ClustalW - improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
-
Thompson JD, Higgins DG, Gibson TJ. (1994). ClustalW - improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res 22: 4673-4680.
-
(1994)
Nucleic Acids Res
, vol.22
, pp. 4673-4680
-
-
Thompson, J.D.1
Higgins, D.G.2
Gibson, T.J.3
-
55
-
-
1842579620
-
Evaluation of 50-mer oligonucleotide arrays for detecting microbial populations in environmental samples
-
Tiquia SM, Wu LY, Chong SC, Passovets S, Xu D, Xu Y et al. (2004). Evaluation of 50-mer oligonucleotide arrays for detecting microbial populations in environmental samples. Biotechniques 36: 664-670.
-
(2004)
Biotechniques
, vol.36
, pp. 664-670
-
-
Tiquia, S.M.1
Wu, L.Y.2
Chong, S.C.3
Passovets, S.4
Xu, D.5
Xu, Y.6
-
56
-
-
27644474315
-
The role of DNA - DNA hybridization and 16S rRNA gene sequencing in solving taxonomic problems by the example of the order Haloanaerobiales
-
Tourova TP. (2000). The role of DNA - DNA hybridization and 16S rRNA gene sequencing in solving taxonomic problems by the example of the order Haloanaerobiales. Microbiology 69: 623-634.
-
(2000)
Microbiology
, vol.69
, pp. 623-634
-
-
Tourova, T.P.1
-
57
-
-
0032947007
-
Polyphasic taxonomy of the genus Shewanella and description of Shewanella oneidensis sp. nov
-
Venkateswaran K, Moser DP, Dollhopf ME, Lies DP, Saffarini DA, MacGregor BJ et al. (1999). Polyphasic taxonomy of the genus Shewanella and description of Shewanella oneidensis sp. nov. Int J Syst Bacteriol 49: 705-724.
-
(1999)
Int J Syst Bacteriol
, vol.49
, pp. 705-724
-
-
Venkateswaran, K.1
Moser, D.P.2
Dollhopf, M.E.3
Lies, D.P.4
Saffarini, D.A.5
MacGregor, B.J.6
-
58
-
-
11144354360
-
Environmental genome shotgun sequencing of the Sargasso Sea
-
Venter JC, Remington K, Heidelberg JF, Halpern AL, Rusch D, Eisen JA et al. (2004). Environmental genome shotgun sequencing of the Sargasso Sea. Science 304: 66-74.
-
(2004)
Science
, vol.304
, pp. 66-74
-
-
Venter, J.C.1
Remington, K.2
Heidelberg, J.F.3
Halpern, A.L.4
Rusch, D.5
Eisen, J.A.6
-
59
-
-
1842494853
-
Key considerations for accurate microarray scanning and image analysis
-
ed, DNA Press: Eagleville, PA, pp
-
Verdnik D, Handran S, Pickett S. (2002). Key considerations for accurate microarray scanning and image analysis. In: Shah GKaS (ed). DNA Array Image Analysis Nuts and Bolts. DNA Press: Eagleville, PA, pp 83-98.
-
(2002)
DNA Array Image Analysis Nuts and Bolts
, pp. 83-98
-
-
Verdnik, D.1
Handran, S.2
Pickett, S.3
-
60
-
-
0027992990
-
Genomic fingerprinting of bacteria using repetitive sequence-based polymerase chain reaction
-
Versalovic J, Schneider M, de Bruijn FJ, Lupski JR. (1994). Genomic fingerprinting of bacteria using repetitive sequence-based polymerase chain reaction. Methods Mol Cell Biol 5: 25-40.
-
(1994)
Methods Mol Cell Biol
, vol.5
, pp. 25-40
-
-
Versalovic, J.1
Schneider, M.2
de Bruijn, F.J.3
Lupski, J.R.4
-
61
-
-
0000770675
-
Report of the ad hoc committee on reconciliation of approaches to bacterial systematics
-
Wayne LG, Brenner DJ, Colwell RR, Grimont PAD, Kandler O, Krichevsky MI et al. (1987). Report of the ad hoc committee on reconciliation of approaches to bacterial systematics. Int J Syst Bacteriol 37: 463-464.
-
(1987)
Int J Syst Bacteriol
, vol.37
, pp. 463-464
-
-
Wayne, L.G.1
Brenner, D.J.2
Colwell, R.R.3
Grimont, P.A.D.4
Kandler, O.5
Krichevsky, M.I.6
-
63
-
-
0035656126
-
Development and evaluation of functional gene arrays for detection of selected genes in the environment
-
Wu LY, Thompson DK, Li GS, Hurt RA, Tiedje JM, Zhou JZ. (2001). Development and evaluation of functional gene arrays for detection of selected genes in the environment. Appl Environ Microbiol 67: 5780-5790.
-
(2001)
Appl Environ Microbiol
, vol.67
, pp. 5780-5790
-
-
Wu, L.Y.1
Thompson, D.K.2
Li, G.S.3
Hurt, R.A.4
Tiedje, J.M.5
Zhou, J.Z.6
-
64
-
-
10644242777
-
Development and evaluation of microarray-based whole-genome hybridization for detection of microorganisms within the context of environmental applications
-
Wu LY, Thompson DK, Liu XD, Fields MW, Bagwell CE, Tiedje JM et al. (2004). Development and evaluation of microarray-based whole-genome hybridization for detection of microorganisms within the context of environmental applications. Environ Sci Technol 38: 6775-6782.
-
(2004)
Environ Sci Technol
, vol.38
, pp. 6775-6782
-
-
Wu, L.Y.1
Thompson, D.K.2
Liu, X.D.3
Fields, M.W.4
Bagwell, C.E.5
Tiedje, J.M.6
-
65
-
-
0032931780
-
Phylogenetic structures of the genus Acinetobacter based on gyrB sequences: Comparison with the grouping by DNA - DNA hybridization
-
Yamamoto S, Bouvet PJM, Harayama S. (1999). Phylogenetic structures of the genus Acinetobacter based on gyrB sequences: comparison with the grouping by DNA - DNA hybridization. Int J Syst Bacteriol 49: 87-95.
-
(1999)
Int J Syst Bacteriol
, vol.49
, pp. 87-95
-
-
Yamamoto, S.1
Bouvet, P.J.M.2
Harayama, S.3
-
66
-
-
0028948030
-
PCR amplification and direct sequencing of gyrB genes with universal primers and their application to the detection and taxonomic analysis of pseudomonas-putida strains
-
Yamamoto S, Harayama S. (1995). PCR amplification and direct sequencing of gyrB genes with universal primers and their application to the detection and taxonomic analysis of pseudomonas-putida strains. Appl Environ Microbiol 61: 1104-1109.
-
(1995)
Appl Environ Microbiol
, vol.61
, pp. 1104-1109
-
-
Yamamoto, S.1
Harayama, S.2
-
67
-
-
0029863154
-
Phylogenetic analysis of Acinetobacter strains based on the nucleotide sequences of gyrB genes and on the amino acid sequences of their products
-
Yamamoto S, Harayama S. (1996). Phylogenetic analysis of Acinetobacter strains based on the nucleotide sequences of gyrB genes and on the amino acid sequences of their products. Int J Syst Bacteriol 46: 506-511.
-
(1996)
Int J Syst Bacteriol
, vol.46
, pp. 506-511
-
-
Yamamoto, S.1
Harayama, S.2
-
68
-
-
0031827993
-
Phylogenetic relationships of Pseudomonas putida strains deduced from the nucleotide sequences of gyrB, ropD and 16S rRNA genes
-
Yamamoto S, Harayama S. (1998). Phylogenetic relationships of Pseudomonas putida strains deduced from the nucleotide sequences of gyrB, ropD and 16S rRNA genes. Int J Syst Bacteriol 48: 813-819.
-
(1998)
Int J Syst Bacteriol
, vol.48
, pp. 813-819
-
-
Yamamoto, S.1
Harayama, S.2
-
69
-
-
0037229896
-
Molecular diversity and characterization of nitrite reductase gene fragments (nirK and nirS) from nitrate- and uranium-contaminated groundwater
-
Yan TF, Fields MW, Wu LY, Zu YG, Tiedje JM, Zhou JZ. (2003). Molecular diversity and characterization of nitrite reductase gene fragments (nirK and nirS) from nitrate- and uranium-contaminated groundwater. Environ Microbiol 5: 13-24.
-
(2003)
Environ Microbiol
, vol.5
, pp. 13-24
-
-
Yan, T.F.1
Fields, M.W.2
Wu, L.Y.3
Zu, Y.G.4
Tiedje, J.M.5
Zhou, J.Z.6
-
70
-
-
0033891425
-
Global gene expression profiles of Bacillus subtilis grown under anaerobic conditions
-
Ye RW, Tao W, Bedzyk L, Young T, Chen M, Li L. (2000). Global gene expression profiles of Bacillus subtilis grown under anaerobic conditions. J Bacteriol 182: 4458-4465.
-
(2000)
J Bacteriol
, vol.182
, pp. 4458-4465
-
-
Ye, R.W.1
Tao, W.2
Bedzyk, L.3
Young, T.4
Chen, M.5
Li, L.6
-
71
-
-
34248172325
-
A nifH-based oligonucleotide microarray for functional diagnostics of nitrogen-fixing microorganisms
-
Zhang L, Hurek T, Reinhold-Hurek B. (2007). A nifH-based oligonucleotide microarray for functional diagnostics of nitrogen-fixing microorganisms. Microb Ecol 53: 456-470.
-
(2007)
Microb Ecol
, vol.53
, pp. 456-470
-
-
Zhang, L.1
Hurek, T.2
Reinhold-Hurek, B.3
-
72
-
-
0037772204
-
Microarrays for bacterial detection and microbial community analysis
-
Zhou JH. (2003). Microarrays for bacterial detection and microbial community analysis. Curr Opin Microbiol 6: 288-294.
-
(2003)
Curr Opin Microbiol
, vol.6
, pp. 288-294
-
-
Zhou, J.H.1
-
73
-
-
0029031784
-
Phylogenetic analyses of a new group of denitrifiers capable of anaerobic growth on toluene and description of Azoarcus tolulyticus sp. nov
-
Zhou JZ, Fries MR, Cheesanford JC, Tiedje JM. (1995). Phylogenetic analyses of a new group of denitrifiers capable of anaerobic growth on toluene and description of Azoarcus tolulyticus sp. nov.. Int J Syst Bacteriol 45: 500-506.
-
(1995)
Int J Syst Bacteriol
, vol.45
, pp. 500-506
-
-
Zhou, J.Z.1
Fries, M.R.2
Cheesanford, J.C.3
Tiedje, J.M.4
-
74
-
-
0345628032
-
Reclassification of Shewanella putrefaciens Owen's genomic group II as Shewanella baltica sp. nov
-
Ziemke F, Hofle MG, Lalucat J, Rossello-Mora R. (1998). Reclassification of Shewanella putrefaciens Owen's genomic group II as Shewanella baltica sp. nov. Int J Syst Bacteriol 48: 179-186.
-
(1998)
Int J Syst Bacteriol
, vol.48
, pp. 179-186
-
-
Ziemke, F.1
Hofle, M.G.2
Lalucat, J.3
Rossello-Mora, R.4
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