Different protein profiles in inferior colliculus and cerebellum: A comparative proteomic study

Neuroscience

Volumn 154, Issue 1, 2008, Pages 233-244

  Becker, M ^a   Nothwang, H G ^a   Friauf, E ^a  

^a Rheinland Pfälzische Technische Universität Kaiserslautern Landau   (Germany)

Author keywords

brain proteomics; gel image analysis; mass spectrometry; region specific differences; two dimensional gel electrophoresis

Indexed keywords

BRAIN PROTEIN; CALBINDIN; CALCIUM BINDING PROTEIN; CALRETININ; COFILIN 1; DYNAMIN I; PROTEIN 14 3 3;

ANIMAL CELL; ANIMAL TISSUE; ARTICLE; BRAIN METABOLISM; CELL FRACTIONATION; CELL HETEROGENEITY; CELL METABOLISM; CEREBELLUM; CHEMICAL ANALYSIS; CONTROLLED STUDY; CYTOPLASM; INFERIOR COLLICULUS; MALE; MATRIX ASSISTED LASER DESORPTION IONIZATION TIME OF FLIGHT MASS SPECTROMETRY; NEUROANATOMY; NEUROCHEMISTRY; NEUROPHYSIOLOGY; NONHUMAN; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN EXPRESSION; PROTEOMICS; QUANTITATIVE ANALYSIS; RAT; SENSORIMOTOR INTEGRATION; STATISTICAL SIGNIFICANCE; TWO DIMENSIONAL GEL ELECTROPHORESIS;

ANIMALS; CEREBELLUM; DATABASES, PROTEIN; ELECTROPHORESIS, GEL, TWO-DIMENSIONAL; INFERIOR COLLICULI; MALE; NERVE TISSUE PROTEINS; PROTEOMICS; RATS; RATS, SPRAGUE-DAWLEY; SPECTROMETRY, MASS, MATRIX-ASSISTED LASER DESORPTION-IONIZATION;

EID: 44749095039     PISSN: 03064522     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.neuroscience.2008.02.017     Document Type: Article

References (60)

1. Airaksinen M., Eilers J., Garaschuk O., Thoenen H., Konnerth A., and Meyer M. Ataxia and altered dendritic calcium signaling in mice carrying a targeted null mutation of the calbindin D28k gene. Proc Natl Acad Sci U S A 94 (1997) 1488-1493
2. Bastianelli E. Distribution of calcium-binding proteins in the cerebellum. Cerebellum 2 (2003) 242-262
3. Bearzatto B., Servais L., Roussel C., Gall D., Baba-Aissa F., Schurmans S., d'Exaerde A.D., Cheron G., and Schiffmann S.N. Targeted calretinin expression in granule cells of calretinin-null mice restores normal cerebellar functions. FASEB J 19 (2005) 380-382
4. Becker M., Schindler J., and Nothwang H.G. Neuroproteomics: the tasks lying ahead. Electrophoresis 27 (2006) 2819-2829
5. Berggren K., Chernokalskaya E., Steinberg T.H., Kemper C., Lopez M.F., Diwu Z., Haugland R.P., and Patton W.F. Background-free, high sensitivity staining of proteins in one- and two-dimensional sodium dodecyl sulfate-polyacrylamide gels using a luminescent ruthenium complex. Electrophoresis 21 (2000) 2509-2521
6. Blaesse P., Guillemin I., Schindler J., Schweizer M., Delpire E., Khiroug L., Friauf E., and Nothwang H.G. Oligomerization of KCC2 correlates with development of inhibitory neurotransmission. J Neurosci 26 (2006) 10407-10419
7. Campostrini N., Areces L.B., Rappsilber J., Pietrogrande M.C., Dondi F., Pastorino F., Ponzoni M., and Righetti P.G. Spot overlapping in two-dimensional maps: A serious problem ignored for much too long. Proteomics 5 (2005) 2385-2395
8. Cao H., Garcia F., and McNiven M.A. Differential distribution of dynamin isoforms in mammalian cells. Mol Biol Cell 9 (1998) 2595-2609
9. Casseday J.H., and Covey E. A neuroethological theory of the operation of the inferior colliculus. Brain Behav Evol 47 (1996) 311-336
10. Celio M.R. Calbindin-D-28K and parvalbumin in the rat nervous system. Neuroscience 35 (1990) 375-475
11. Chen H.K., Fernandez-Funez P., Acevedo S.F., Lam Y.C., Kaytor M.D., Fernandez M.H., Aitken A., Skoulakis E.M.C., Orr H.T., Botas J., and Zoghbi H.Y. Interaction of Akt-phosphorylated ataxin-1 with 14-3-3 mediates neurodegeneration in spinocerebellar ataxia type 1. Cell 113 (2003) 457-468
12. Chen W., Ji J.G., Xu X.M., He S.Z., and Ru B.G. Proteomic comparison between human young and old brains by two-dimensional gel electrophoresis and identification of proteins. Int J Dev Neurosci 21 (2003) 209-216
13. Cheon M.S., Fountoulakis M., Dierssen M., Ferreres J.C., and Lubec G. Expression profiles of proteins in fetal brain with Down syndrome. J Neural Transm Suppl 61 (2001) 311-319
14. Davis K.A., Ramachandran R., and May B.J. Auditory processing of spectral cues for sound localization in the inferior colliculus. J Assoc Res Otolaryngol 4 (2003) 148-163
15. Denslow N., Michel M.E., Temple M.D., Hsu C.Y., Saatman K., and Hayes R.L. Application of proteomics technology to the field of neurotrauma. J Neurotrauma 20 (2003) 401-407
16. Fortin M., Marchand R., and Parent A. Calcium-binding proteins in primate cerebellum. Neurosci Res 30 (1998) 155-168
17. Fountoulakis M. Application of proteomics technologies in the investigation of the brain. Mass Spectrom Rev 23 (2004) 231-258
18. Fountoulakis M., Cairns N., and Lubec G. Increased levels of 14-3-3 gamma and epsilon proteins in brain of patients with Alzheimer's disease and Down syndrome. J Neural Transm Suppl 57 (1999) 323-335
19. Friauf E. Distribution of calcium-binding protein calbindin-d-28K in the auditory system of adult and developing rats. J Comp Neurol 349 (1994) 193-211
20. Gevaert K., Van Damme P., Ghesquière B., Impens F., Martens L., Hensens K., and Vandekerckhove J. A la carte proteomics with an emphasis on gel-free techniques. Proteomics 7 (2007) 2698-2718
21. Gilman S. The spinocerebellar ataxias. Clin Neuropharmacol 23 (2000) 296-303
22. Guillemin I., Becker M., Ociepka K., Friauf E., and Nothwang H.G. A subcellular prefractionation protocol for minute amounts of mammalian cell cultures and tissue. Proteomics 5 (2005) 35-45
23. Gurniak C.B., Perlas E., and Witke W. The actin depolymerizing factor n-cofilin is essential for neural tube morphogenesis and neural crest cell migration. Dev Biol 278 (2005) 231-241
24. Hinshaw J.E. Dynamin and its role in membrane fission. Annu Rev Cell Dev Biol 16 (2000) 483-519
25. Huynh H., Bottini N., Williams S., Cherepanov V., Musumeci L., Saito K., Bruckner S., Vachon E., Wang X.D., Kruger J., Chow C.W., Pellecchia M., Monosov E., Greer P.A., Trimble W., Downey G.P., and Mustelin T. Control of vesicle fusion by a tyrosine phosphatase. Nat Cell Biol 6 (2004) 831-839
26. Ito M. Bases and implications of learning in the cerebellum: adaptive control and internal model mechanism. Prog Brain Res 148 (2005) 95-109
27. Kawamoto Y., Akiguchi I., Nakamura S., Honjyo Y., Shibasaki H., and Budka H. 14-3-3 Proteins in Lewy bodies in Parkinson disease and diffuse Lewy body disease brains. J Neuropathol Exp Neurol 61 (2002) 245-253
28. Kim S.I., Voshol H., van Oostrum J., Hastings T.G., Cascio M., and Glucksman M.J. Neuroproteomics: Expression profiling of the brain's proteomes in health and disease. Neurochem Res 29 (2004) 1317-1331
29. Kretzschmar H.A., Ironside J.W., DeArmond S.J., and Tateishi J. Diagnostic criteria for sporadic Creutzfeldt-Jakob disease. Arch Neurol 53 (1996) 913-920
30. Lamanda A., Zahn A., Roder D., and Langen H. Improved ruthenium II tris (bathophenantroline disulfonate) staining and destaining protocol for a better signal-to-background ratio and improved baseline resolution. Proteomics 4 (2004) 599-608
31. Li K.W., Hornshaw M., van der Schors R.C., Watson R., Tate S., Casetta B., Jiminez C.R., Gouwenberg Y., Gundelfinger E.D., Smalla K.H., and Smit A.B. Proteomics analysis of rat brain postsynaptic density. J Biol Chem 279 (2004) 987-1002
32. 2+-sensitive phospholipid-binding protein with very high affinity for protein kinase C. J Biol Chem 269 (1994) 21043-21050
33. Lohmann C., and Friauf E. Distribution of the calcium-binding proteins parvalbumin and calretinin in the auditory brainstem of adult and developing rats. J Comp Neurol 367 (1996) 90-109
34. Marini A.M., Strauss K.I., and Jacobowitz D.M. Calretinin-containing neurons in rat cerebellar granule cell cultures. Brain Res Bull 42 (1997) 279-288
35. Martin P.R., McCool B.A., and Singleton C.K. Molecular genetics of transketolase in the pathogenesis of the Wernicke-Korsakoff syndrome. Metab Brain Dis 10 (1995) 45-55
36. Muller J.M.M., Rabouille C., Newman R., Shorter J., Freemont P., Schiavo G., Warren G., and Shima D.T. An NSF function distinct from ATPase-dependent SNARE disassembly is essential for Golgi membrane fusion. Nat Cell Biol 1 (1999) 335-340
37. Nakano K., Kanai-Azuma M., Kanai Y., Moriyama K., Yazaki K., Hayashi Y., and Kitamura N. Cofilin phosphorylation and actin polymerization by NRK/NESK, a member of the germinal center kinase family. Exp Cell Res 287 (2003) 219-227
38. Paoletti F., Mocali A., and Tombaccini D. Cysteine proteinases are responsible for characteristic transketolase alterations in Alzheimer fibroblasts. J Cell Physiol 172 (1997) 63-68
39. Pavlov D., Muhlrad A., Cooper J., Wear M., and Reisler E. Actin filament severing by cofilin. J Mol Biol 365 (2007) 1350-1358
40. Pietrogrande M.C., Marchetti N., Dondi F., and Righetti P.G. Spot overlapping in two-dimensional polyacrylamide gel electrophoresis maps: Relevance to proteomics. Electrophoresis 24 (2003) 217-224
41. Pollak D., Weitzdoerfer R., Yang Y.W., Prast H., Hoeger H., and Lubec G. Cerebellar protein expression in three different mouse strains and their relevance for motor performance. Neurochem Int 46 (2005) 19-29
42. Resibois A., and Rogers J.H. Calretinin in rat brain: an immunohistochemical study. Neuroscience 46 (1992) 101-134
43. Schindler J., Lewandrowski U., Sickmann A., Friauf E., and Nothwang H.G. Proteomic analysis of brain plasma membranes isolated by affinity two-phase partitioning. Mol Cell Proteomics 5 (2006) 390-400
44. Schindler J., Lewandrowski U., Sickmann A., and Friauf E. Aqueous polymer two-phase systems for the proteomic analysis of plasma membranes from minute brain samples. J Proteome Res 7 (2008) 432-442
45. Shin J.B., Streijger F., Beynon A., Peters T., Gadzala L., McMillen D., Bystrom C., Van der Zee C.E.E.M., Wallimann T., and Gillespie P.G. Hair bundles are specialized for ATP delivery via creatine kinase. Neuron 53 (2007) 371-386
46. Steinacker P., Schwarz P., Reim K., Brechlin P., Jahn O., Kratzin H., Aitken A., Wiltfang J., Aguzzi A., Bahn E., Baxter H.C., Brose N., and Otto M. Unchanged survival rates of 14-3-3 gamma knockout mice after inoculation with pathological prion protein. Mol Cell Biol 25 (2005) 1339-1346
47. Tardif E., Chiry O., Probst A., Magistretti P.J., and Clarke S. Patterns of calcium-binding proteins in human inferior colliculus: Identification of subdivisions and evidence for putative parallel systems. Neuroscience 116 (2003) 1111-1121
48. Thach W.T., and Bastian A.J. Role of the cerebellum in the control and adaptation of gait in health and disease. Prog Brain Res 143 (2004) 353-366
49. Tonge R., Shaw J., Middleton B., Rowlinson R., Rayner S., Young J., Pognan F., Hawkins E., Currie I., and Davison M. Validation and development of fluorescence two-dimensional differential gel electrophoresis proteomics technology. Proteomics 1 (2001) 377-396
50. Unlu M., Morgan M.E., and Minden J.S. Difference gel electrophoresis: a single-gel method for detecting changes in protein extracts. Electrophoresis 18 (1997) 2071-2077
51. Van den Bergh G., and Arckens L. Fluorescent two-dimensional difference gel electrophoresis unveils the potential of gel-based proteomics. Curr Opin Biotechnol 15 (2004) 38-43
52. Van den Bergh G., Clerens S., Firestein B.L., Burnat K., and Arckens L. Development and plasticity-related changes in protein expression patterns in cat visual cortex: a fluorescent two-dimensional difference gel electrophoresis approach. Proteomics 6 (2006) 3821-3832
53. van Heusden G.P.H. 14-3-3 Proteins: Regulators of numerous eukaryotic proteins. IUBMB Life 57 (2005) 623-629
54. Whiteheart S.W., Schraw T., and Matveeva E.A. N-ethylmaleimide sensitive factor [NSF] structure and function. Int Rev Cytol 207 (2001) 71-112
55. Wiltfang J., Otto M., Baxter H.C., Bodemer M., Steinacker P., Bahn E., Zerr I., Kornhuber J., Kretzschmar H.A., Poser S., Ruther E., and Aitken A. Isoform pattern of 14-3-3 proteins in the cerebrospinal fluid of patients with Creutzfeldt-Jakob disease. J Neurochem 73 (1999) 2485-2490
56. Xu J., Kao S.Y., Lee F.J.S., Song W.H., Jin L.W., and Yankner B.A. Dopamine-dependent neurotoxicity of alpha-synuclein: A mechanism for selective neurodegeneration in Parkinson disease. Nat Med 8 (2002) 600-606
57. Xu Z.P., Wawrousek E.F., and Piatigorsky J. Transketolase haploinsufficiency reduces adipose tissue and female fertility in mice. Mol Cell Biol 22 (2002) 6142-6147
58. Zettel M.L., Frisina R.D., Haider S.E.A., and Oneill W.E. Age-related changes in calbindin D-28k and calretinin immunoreactivity in the inferior colliculus of CBA/CaJ and C57Bl/6 mice. J Comp Neurol 386 (1997) 92-110
59. Zheng P.P., Luider T.M., Pieters R., Avezaat C.J.J., Van Den Bent M.J., Smitt P.A.E.S., and Kros J.M. Identification of tumor-related proteins by proteomic analysis of cerebrospinal fluid from patients with primary brain tumors. J Neuropathol Exp Neurol 62 (2003) 855-862
60. Zhu H.P., Enaw J.O.E., Ma C., Shaw G.M., Lammer E.J., and Finnell R.H. Association between CFLI gene polymorphisms and spina bifida risk in a California population. BMC Med Genet 8 (2007) 12