Analysis of Arabidopsis arginase gene transcription patterns indicates specific biological functions for recently diverged paralogs

Plant Molecular Biology

Volumn 67, Issue 4, 2008, Pages 429-440

  Brownfield, Disa L ^a   Todd, Christopher D ^b   Deyholos, Michael K ^a  

^a UNIVERSITY OF ALBERTA   (Canada)

^b UNIVERSITY OF SASKATCHEWAN   (Canada)

Author keywords

Arginase; Defense; Jasmonate; Jasmonic acid; Nitrogen; Pollen

Indexed keywords

ARGINASE; PRIMER DNA;

ARABIDOPSIS; ARTICLE; DNA MICROARRAY; ENZYMOLOGY; GENE; GENE EXPRESSION; GENETIC TRANSCRIPTION; GENETICS; NUCLEOTIDE SEQUENCE; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION;

ARABIDOPSIS; ARGINASE; BASE SEQUENCE; DNA PRIMERS; GENE EXPRESSION; GENES, PLANT; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION; TRANSCRIPTION, GENETIC;

ARABIDOPSIS; MAGNOLIOPHYTA;

EID: 44749084355     PISSN: 01674412     EISSN: None     Source Type: Journal    
DOI: 10.1007/s11103-008-9336-2     Document Type: Article

References (38)

1. Alabadi D, Aguero MS, Perez-Amador MA et al (1996) Arginase, arginine decarboxylase, ornithine decarboxylase and polyamines in tomato ovaries-changes in unpollinated ovaries and parthenocarpic fruits induced by auxin or gibberellin. Plant Physiol 112:1237-1244
2. Bate N, Twell D (1998) Functional architecture of a late pollen promoter: pollen-specific transcription is developmentally regulated by multiple stage-specific and co-dependent activator elements. Plant Mol Biol 37:859-869
3. Boter M, Ruiz-Rivero O, Abdeen A et al (2004) Conserved myc transcription factors play a key role in jasmonate signaling both in tomato and arabidopsis. Gene Dev 18:1577-1591
4. Buchanan BB, Gruissem W, Jones RS (eds) (2000) Biochemistry and molecular biology of plants. American Society of Plant Biology, Rockville, MD
5. Chen H, McCaig BC, Melotto M et al (2004) Regulation of plant arginase by wounding, jasmonate, and the phytotoxin coronatine. J Biol Chem 279:45998-46007
6. Cooke JEK, Brown KA, Wu R et al (2003) Gene expression associated with n-induced shifts in resource allocation in poplar. Plant Cell Environ 26:757-770
7. Corpas FJ, Barroso JB, Carreras A et al (2006) Constitutive arginine-dependent nitric oxide synthase activity in different organs of pea seedlings during plant development. Planta 224:246-254
8. Devoto A, Turner JG (2005) Jasmonate-regulated arabidopsis stress signalling network. Physiol Plant 123:161-172
9. Devoto A, Ellis C, Magusin A et al (2005) Expression profiling reveals coi1 to be a key regulator of genes involved in wound- and methyl jasmonate-induced secondary metabolism, defence, and hormone interactions. Plant Mol Biol 58:497-513
10. Doyle JJ, Doyle JL (1987) A rapid DNA isolation procedure from small quantities of fresh leaf tissues. Phytochem Bull 19:11-15
11. Filichkin SA, Leonard JM, Monteros A et al (2004) A novel endo-beta-mannanase associated with anther and gene in tomato leman5 is pollen development. Plant Physiol 134:1080-1087
12. Goldraij A, Polacco JC (1999) Arginase is inoperative in developing soybean embryos. Plant Physiol 119:297-303
13. Higo K, Ugawa Y, Iwamoto M et al (1999) Plant cis-acting regulatory DNA elements (place) database: 1999. Nucleic Acids Res 27:297-300
14. Hong-Qi Z, Croes AF, Linskens HF (1982) Protein synthesis in germinating pollen of petunia: role of proline. Planta 154:199-203
15. Honys D, Twell D (2003) Comparative analysis of the arabidopsis pollen transcriptome. Plant Physiol 132:640-652
16. Jenkinson CP, Grody WW, Cederbaum SD (1996) Comparative properties of arginases. Comp Biochem Physiol 114B:107-132
17. Jiang YQ, Deyholos MK (2006) Comprehensive transcriptional profiling of NaCl-stressed Arabidopsis roots reveals novel classes of responsive genes. BMC Plant Biol 6:25
18. King JE, Gifford DJ (1997) Amino acid utilization in seeds of loblolly pine during germination and early seedling growth. Plant Physiol 113:1125-1135
19. Klessig DF, Malamy J (1994) The salicylic-acid signal in plants. Plant Mol Biol 26:1439-1458
20. Krumpelman PM, Freyermuth SK, Cannon JF et al (1995) Nucleotide-sequence of arabidopsis-thaliana arginase expressed in yeast. Plant Physiol 107:1479-1480
21. Lebel E, Heifetz P, Thorne L et al (1998) Functional analysis of regulatory sequences controlling PR-1 gene expression in arabidopsis. Plant J16:223-233
22. Lescot M, DehaisP, Thijs G et al (2002) Plantcare, a database of plant cis-acting regulatory elements and a portal to tools for in silico analysis of promoter sequences. Nucleic Acids Res 30:325-327
23. Livak KJ, Schmittgen TD (2001) Analysis of relative gene expression data using real-time quantitative pcr and the 2(t)(-delta delta c) method. Methods 25:402-408
24. Micallef BJ, Shelp BJ (1989a) Arginine metabolism in developing soybean cotyledons. 3. Utilization. Plant Physiol 91:170-174
25. Micallef BJ, Shelp BJ (1989b) Arginine metabolism in developing soybean cotyledons. 1. Relationship to nitrogen nutrition. Plant Physiol 90:624-630
26. Palmieri L, Todd CD, Arrigoni R et al (2006) Arabidopsis mitochondria have two basic amino acid transporters with partially overlapping specificities and differential expression in seedling development. Bioenergetics 1757:1277-1283
27. Perez-Amador MA, Lidder P, Johnson MA et al (2001) New molecular phenotypes in the dst mutants of arabidopsis revealed by DNA microarray analysis. Plant Cell 13:2703-2717
28. Prestridge DS (1991) Signal scan-a computer-program that scans DNA-sequences for eukaryotic transcriptional elements. Comput Appl Biosci 7:203-206
29. Rogers HJ, Bate N, Combe J et al (2001) Functional analysis of cis-regulatory elements within the promoter of the tobacco late pollen gene g10. Plant Mol Biol 45:577-585
30. Rouster J, van Mechelen J, Cameron-Mills V (1998) The untranslated leader sequence of the barley lipoxygenase 1 (lox1) gene confers embryo-specific expression. Plant J 15:435-440
31. Saeed AI, Sharov V, White J et al (2003) TM4: a free, open-source system for microarray data management and analysis. Biotechniques 34:374-384
32. Schwacke R, Grallath S, Breitkreuz KE et al (1999) Leprot1, a transporter for proline, glycine betaine, and gamma-amino butyric acid in tomato pollen. Plant Cell 11:377-391
33. Todd CD, Cooke JEK, Mullen RT et al (2001) Regulation of loblolly pine (Pinus taeda L.) arginase in developing seedling tissue during germination and post-germinative growth. Plant Mol Biol 45:555-565
34. Tusher VG, Tibshirani R, Chu G (2001) Significance analysis of microarrays applied to the ionizing radiation response. Proc Natl Acad Sci USA 98:5116-5121
35. Twell D, Yamaguchi J, Wing RA et al (1991) Promoter analysis of genes that are coordinately expressed during pollen development reveals pollen-specific enhancer sequences and shared regulatory elements. Gene Dev 5:496-507
36. Ward ER, Uknes SJ, Williams SC et al (1991) Coordinate gene activity in response to agents that induce systemic acquired-resistance. Plant Cell 3:1085-1094
37. Weigel D, Glazebrook J (2002) How to transform Arabidopsis. In: Arabidopsis: A laboratory manual. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY
38. Zonia LE, Stebbins NE, Polacco JC (1995) Essential role of urease in germination of nitrogen-limited Arabidopsis thaliana seeds. Plant Physiol 107:1097-1103