Dinoflagellate phylogeny revisited: Reconciling morphological and molecular based phylogenies

Grana

Volumn 38, Issue 2-3, 1999, Pages 66-80

  Fensome, Robert A ^a   Saldarriaga, Juan F ^b   Taylor, Max F J R ^c  

^a GEOLOGICAL SURVEY OF CANADA   (Canada)

^b Department of Botany ^*  (Canada)

^c UNIVERSITY OF BRITISH COLUMBIA   (Canada)

Author keywords

[No Author keywords available]

Indexed keywords

DINOFLAGELLATE; MORPHOLOGY; PHYLOGENY;

EID: 0033506095     PISSN: 00173134     EISSN: 16512049     Source Type: Journal    
DOI: 10.1080/00173139908559216     Document Type: Article

References (66)

1. Baldauf, S. 1999. Who's who in the eukaryotic crown: a search for the origins of animals and fungi. American Naturalist 154 (4, suppl.): 5178-5188.
2. Below, R. 1987. Evolution und Systematik von Dinoflagellaten-Zysten aus der Ordnung Peridiniales I. Allgemeine Grundlagen und Subfamilie Rhaetogonyaulacoideae (Familie Peridiniaceae). Palaeontographica Abteilung B 205: 1-164.
3. Below, R. 1987. Evolution und Systematik von Dinoflagellaten-Zysten aus der Ordnung Peridiniales II. Cladopyxiaceae und Valvaeodiniaceae. Palaeontographica Abteilung B 206: 1-115.
4. Below, R. 1990. Evolution und Systematik von Dinoflagellaten-Zysten aus der Ordnung Peridiniales III. Familie Pareodinia-ceae. Palaeontographica Abteilung B 220 (14): 1-96.
5. Bujak, J. P. & Williams, G. L. 1981. The evolution of dinoflagellates. Canadian Journal of Botany 59: 2077-2087.
6. Burkholder, J. M. & Glasgow, H. B., Jr. 1995. Interactions of a toxic estuarine dinoflagellate with microbial predators and prey. Archiv für Protistenkunde 145: 177-188.
7. Butterfield, N. J. & Rainbird, R. H. 1998. Diverse organic-walled fossils, including "possible dinoflagellates", from the early Neoproterozoic of arctic Canada. Geology 26: 963-966.
8. Calandra, F. 1964. Micropaléontologie: Sur un présumé dinoflagellé Ârpylorus nov. gen. du Gothlandien de Tunisie. Comptes rendus hebdomadaires des séances de l'Académie des sciences D.258: 4112-4114.
9. Cavalier-Smith, T. 1991. Cell diversification in heterotrophic flagellates. In: The biology of free-living heterotrophic flagellates (ed. D. J. Patterson and J. Larsen). Systematics Association Special Volume 45. Clarendon Press, Oxford.
10. Cavalier-Smith, T. 1993. Kingdom Protozoa and its 18 phyla. Microbiological Reviews 57 (4): 953-994.
11. Dodge, J. D. 1983. Dinoflagellates: investigation and phylogenetic speculation. British Phycological Journal 18: 335-336.
12. Dodge, J. D. 1987. General ultrastructure, Chapter 3. In: The biology of dinoflagellates (ed. F. J. R. Taylor), pp. 93-119. Blackwell, Oxford.
13. Dodge, J. D. 1989. Phylogenetic relationships of dinoflagellates and their plastids. In: The chromophyte algae: problems and perspectives (ed. J. C. Green, B. S. C. Leadbeater & W. L. Diver), pp. 207-227. Systematics Association Special Volume 38. Clarendon Press, Oxford.
14. Downie, C. 1973. Observations on the nature of acritarchs. Palaeontology 16 (2): 239-259.
15. Evitt, W. R. 1981. The difference it makes that dinoflagellates did it differently. International Commission for Palynology Newsletter 4 (1): 6-7.
16. Evitt, W. R. 1985. Sporopollenin dinoflagellate cysts: their morphology and interpretation. American Association of Stratigraphie Palynologists, Dallas.
17. Fensome, R. A., Taylor, F. J. R., Norris, G., Sarjeant, W. A. S., Wharton, D. I. & Williams, G. L. 1993. A classification of fossil and living dinoflagellates. Micropaleontology Press Special Publication 7: 351.
18. Fensome, R. A., MacRae, R. A., Moldowan, J. M., Taylor, F. J. R. & Williams, G. L. 1996. The early Mesozoic radiation of dinoflagellates. Paleobiology 22: 329-338.
19. Gajadhar, A. A., Marquardt, W. C., Hall, R., Gunderson, J., Aritzia-Carmona, E. V. & Sogin, M. L. 1991. Ribosomal RNA sequences of Sarcocystis muris, Theileria annulata and Crypthe-codinium cohnii reveal evolutionary relationships among api-complexans, dinoflagellates and ciliates. Molec. Biochem. Parasit 45: 147-154.
20. Goodman, D. E. 1987. Dinoflagellate cysts in ancient and modern sediments. In: The biology of dinoflagellates. Chapter 15. (ed. F. J. R. Taylor), pp. 649-722. Blackwell, Oxford.
21. Gray, M. W., Lang, B. F., Cedergren, R., Golding, G. B., Lemieux, C., Sankoff, D., Turmel, M., Brossard, N., Delage, E., Littlejohn, T. G., Plante, I., Rioux, P., Saint-Louis, D., Zhu, Y. & Burger, G. 1998. Genome structure and gene content in protist mitochondrial DNAs. Nucleic Acids Research 26 (4): 865-878.
22. Grzebyk, D., Sako, Y. & Borland, B. 1998. Phylogenetic analysis of nine species of Prorocentrum (Dinophyceae) inferred from 18S ribosomal DNA sequences, morphological comparisons, and a description of Prorocentrum panamensis, sp. nov. Journal of Phycology 34: 1055-1068.
23. Gunderson, J. H., Elwood, H., Ingold, A., Kindle, K. & Sogin, M. L. 1987. Phylogenetic relationships between chlorophytes, chrysophytes and oomycetes. Proceedings of the National Academy of Science of the USA 84: 5823-5827.
24. Gunderson, J. H., Goss, S. H. & Coats, D. W. 1999. The phylogenetic position of Amoebophrya sp. from Gymnodinium sanguineum. Journal of Eukaryotic Microbioliology 46: 194-197.
25. Hansen, G. & Moestrup, O. 1998. Fine-structural characterization of Alexandrium catenella (Dinophyceae) with special emphasis on the flagellar apparatus. European Journal of Phycology 33: 281-291.
26. Harland, R. 1981. Cysts of the colonial dinoflagellate Polykrikos schwartzii Bütschli 1873, (Gymnodiniales), from Recent sediments, Firth of Forth, Scotland. Palynology 5: 65-79.
27. Head, M. J. 1996. Chapter 30. Modern dinoflagellate cysts and their biological affinities. In: Palynology: Principles and Applications Vol. 3 (ed. J. Jansonius & D. C. McGregor), pp. 1197-1248. American Association of Stratigraphie Palynologists Foundation, Dallas.
28. Hillis, D. M. & Dixon, M. T. 1991. Ribosomal DNA: molecular evolution and phylogcnctic inference. Quarterly Reviews of Biology 66: 411-453.
29. Hinnebusch, A. G., Klotz, L. C., Blanken, R. L. & Loeblich, A. R., III. 1981. An evaluation of the phylogenetic position of the dinoflagellate Crypthecodinium cohnii based on 5S rRNA characterization. Journal of Molecular Evolution 17: 334-347.
30. Landsberg, J. H., Steidinger, K. A., Blakesley, B. A. & Zondervan, R. L. 1994. Scanning electron microscope study of dinospores of Amyloodinium cf. ocellatum, a pathogenic dinoflagellate parasite of marine lish, and comments on its relationship to the Peridiniales. Dis. Aquat. Org (20): 23-32.
31. Lee, R. E. & Kugrens, P. 1992. Relationship between the flagellates and ciliates. Microbiological Reviews 56 (4): 529-542.
32. Le Hérissé, A., Masure, E. & Massa, D. 1995. Revision d'Arpylorus antiquus du Silurien: la fin d'un mythe. Colloque du GDR 88 du CNRS (biologistes et micropaléontologistes), Paris, 1995. Evolution et environnement des organismes microscopiques, Abstracts.
33. Lenaers, G., Maroteaux, L., Michot, B. & Herzog, M. 1989. Dinoflagellates in evolution: a molecular phylogenetic analysis of large subunit ribosomal RNA. Journal of Molecular Evolution 29: 40-51.
34. Lenaers, G., Scholin, C., Bhaud, Y., Saint-Hilaire, D. & Herzog, M. 1989. A molecular phylogeny of dinoflagellate protists (Pyr-rhophyta) inferred from the sequence of 24S rRNA divergent domains D1 and D8. Journal of Molecular Evolution 32: 53-63.
35. Loeblich, A. R., III. 1976. Dinoflagellate evolution: speculation and evidence. Journal of Protozoology 23: 13-28.
36. Loeblich, A. R., III. 1984. Dinoflagellate evolution. In: Dinoflagellates (ed. D. L. Spector), pp. 481-522. Academic Press, Orlando.
37. Lister, T. R. 1970. The acritarchs and chitinozoa from the Wenlock and Ludlow Series of the Ludlow and Millichope areas, Shropshire. Palaeontographical Society Monographs 124(1): (publication 528): 1-100.
38. MacRae, R. A., Fensome, R. A. & Williams, G. L. 1996. Fossil dinoflagellate diversity, originations, and extinctions and their significance. Canadian Journal of Botany 74 (11): 1687-1694.
39. Michot, B., Hassouna, N. & Bachellerie, J.-P. 1984. Secondary structure of mouse 28S rRNA and general model for folding of the large rRNA in eukaryotes. Nucleic Acids Research 12: 4259-4279.
40. Moldowan, J. M. & Talyzina, N. M. 1998. Biogeochemical evidence for dinoflagellate ancestors in the Early Cambrian. Science 281: 1168-1170.
41. Moldowan, J. M., Dahl, J., Jacobson, S. R., Huizinga, B. J., Fago, F. J., Shelly, R., Watt, D. S. & Peters, K. E. 1996. Chemostratigraphic reconstruction of biofacies: molecular evidence linking cyst-forming dinoflagellates with pre-Triassic ancestors. Geology 24: 159-162.
42. Montresor, M., Procaccini, G. & Sloecker, D. K. 1999. Polarella glacialis gen. nov., sp. nov. (Dinophyceae): Suessiaceae are still alive. Journal of Phycology 35: 186-197.
43. Philippe, H. & Adouttc, A. 1998. The molecular phylogeny of Eukaryota: solid facts and uncertainties. In: Evolutionary relationships among protozoa (ed. G. H. Coombs, K. Vicker-man, M. A. Sleigh & A. Warren), pp. 25-56 Syst. Assoc. Vol.56. Sp. Vol. Kluwer Acad. Pubis., Dordrecht.
44. Philippe, H. & Douzery, E. 1994. The pitfalls of molecular phylogeny based on four species, based on the Cetacea/Artiodactyla relationships-Journal of Mammalian Evolution 2: 133-152.
45. Piel, K. M. & Evitt, W. R. 1980. Paratabulation in the Jurassic dinoflagellate genus Nannoceratopsis and a comparison with modern taxa. Palynology 4: 79-104.
46. Roberts, K. R. 1991. The flagellar apparatus and cytoskeleton of dinoflagellates. In: The biology of free-living heterotrophic flagellates (ed. D. J. Patterson & J. Larsen), pp. 285-302. Systematics Association Special Volume 45. Clarendon Press, Oxford.
47. Roberts, K. R., Timpano, P. & Montegut, A. 1987. The apical pore fibrous complex: a new cytological feature of some dinoflagel-lates. Protoplasma 137: 65-69.
48. Rowan, K. S. 1989. Photosynthetic pigments of algae. Cambridge University Press, Cambridge.
49. Sarjeant, W. A. S. 1978. Arpylorus antiquus Calandra, emend., a dinoflagellate cyst from the Upper Silurian. Palynology 2: 167-179.
50. Saunders, G. W., Hill, D. R. A., Sexton, J. & Andersen, R. A. 1997. Small-subunit ribosomal RNA sequences from selected dino-flagellates: testing classical evolutionary hypotheses with molecular systematic methods. In: Origins of algae and their plastids (ed. D. Bhattacharya), pp. 237-259. Springer, Vienna, New York.
51. Schnepf, E. & Elbrâchter, M. 1988. Cryptophycean-like double membrane-bound chloroplast in the dinoflagellate Dinophysis Ehrenb.: evolutionary, phylogenetic and toxicological implications. Botanica Acta 101: 196-203.
52. Sogin, M. L. 1989. Evolution of eukaryotic microorganisms and their small-subunit ribosomal RNA's. American Zoologist 29: 487-499.
53. Steidinger, K. A., Burkholder, J. M., Glasgow, H. B., Hobbs, C. W., Garrett, J. K., Truby, E. W., Noga, E. J. & Smith, S. A. 1996. Pfiesteria piscicida gen. et sp. nov. (Pfiesteriaceae fam. nov.), a new toxic dinoflagellate with a complex life cycle and behaviour. Journal of Phycology 32: 157-164.
54. Summons, R. E., Thomas, J., Maxwell, J. R. & Boreham, C. J. 1992. Secular and environmental constraints on the occurrence of dinosterane in sediments. Geochimica et Cosmochimica Acta 56: 2437-2444.
55. Taylor, F. J. R. 1972. Unpublished observations on the thecate stage of the dinoflagellate genus Pyrocystis by the late C.A. Kofoid and Josephine Michener. Phycologia 11: 47-55.
56. Taylor, F. J. R. 1976. Flagellate phylogeny: a study in conflicts. Journal of Protozoology 23: 28-40.
57. Taylor, F. J. R. 1978. Problems in the development of an explicit hypothetical phylogeny of the lower Eukaryotes. BioSystems 10: 67-89.
58. Taylor, F. J. R. 1980. On dinoflagellate evolution. BioSystems 13: 65-108.
59. Taylor, F. J. R. 1994. The role of phenotypic comparisons of living protists in the determination of probable eukaryotic phylogeny. In: Early Life on Earth (ed. S. Bengtson), pp. 312-326. Nobel Symposium 84: Columbia Univ. Press, New York.
60. Taylor, F. J. R. 1999a. Morphology (tabulation) and molecular evidence for dinoflagellate phylogeny reinforce each other. Journal of Phycology 35: 4-6.
61. Taylor, F. J. R. 1999. Ultrastructure as a control for molecular phylogenetic studies. American Naturalist. 154 (4, Suppl.): S125-136.
62. Toffer, K. L., Schaefer, E. F., Glasgow, H. B., Burkholder, J. M., Rublee, P. A. 1998. Ribosomal DNA from the toxic dinoflagellate Pfiesteria piscicida. In: Harmful Algae (ed. B. Reguera. J. Blanco., M. L. Fernandez & T. Wyatt), pp. 278-279. Xunta de Galicia and Intergovernmental Oceanographic Commission of UNESCO.
63. Van de Peer, Y. & De Wächter, R. 1997. Evolutionary relationships among the eukaryotic crown taxa taking into account site to site rate variation in 18S rRNA. Journal of Molecular Evolution 45: 619-630.
64. Vozzhennikova, T. F. & Sheshegova, L. I. 1989. Palaeodinophysis gen. et sp. n. iz devona Rudnogo Altaya (unikal'naya nakhodka iskopayemykh dinoflagellyat). Doklady Akademii Nauk SSSR 307(2): 442-445. [Published English translation dated 1991: Palaeodinophysis gen. et sp. n. from the Devonian of the Rudnyy Altay (a unique find of dinoflagellate fossils). Transactions (Doklady) of the USSR Academy of Sciences, Earth Science Sections, pp. 227-230. Wiley-Scripta Technica, Inc., New York]
65. Wilcox, T. 1998. Large-subunit ribosomal RNA systematics of symbiotic dinoflagellates: morphology does not recapitulate phylogeny. Molecular Phylogenetics and Evolution. 10(3): 436-448.
66. Zardoya, R., Costas, E., Lopez-Rodas, V., Garrido-Partierra, A. & Bautista, J. M. 1995. Revised dinoflagellate phylogeny inferred from molecular analysis of large-subunit ribosomal RNA gene sequences. Journal of Molecular Evolution 41: 637-645.