Plant phenology and genetic variability in root and nodule development strongly influence genetic structuring of Rhizobium leguminosarum biovar viciae populations nodulating pea

New Phytologist

Volumn 179, Issue 1, 2008, Pages 224-235

  Depret, Géraldine ^a   Laguerre, Gisèle ^a,b  

^a UNIVERSITÉ DE BOURGOGNE   (France)

^b CEMAGREF   (France)

Author keywords

Genetic variability; nodD; Pisum sativum; Rhizobium leguminosarum biovar viciae; Rhizosphere; Selection

Indexed keywords

RIBOSOMAL SPACER DNA;

DEVELOPMENTAL STAGE; GENETIC STRUCTURE; GENETIC VARIATION; LEGUME; MUTATION; NODULATION; PHENOLOGY; RHIZOBACTERIUM; ROOTING; SELECTION; SYMBIOSIS;

ARTICLE; CHEMISTRY; GENETICS; GENOTYPE; GROWTH, DEVELOPMENT AND AGING; MICROBIOLOGY; MUTATION; NODULATION; PEA; PHYLOGENY; PHYSIOLOGY; RHIZOBIUM LEGUMINOSARUM; SEQUENCE ALIGNMENT; SYMBIOSIS;

DNA, RIBOSOMAL SPACER; GENOTYPE; MUTATION; PEAS; PHYLOGENY; RHIZOBIUM LEGUMINOSARUM; ROOT NODULES, PLANT; SEQUENCE ALIGNMENT; SOIL MICROBIOLOGY; SYMBIOSIS;

BACTERIA (MICROORGANISMS); PISUM SATIVUM; RHIZOBIACEAE; RHIZOBIUM LEGUMINOSARUM;

EID: 44649146689     PISSN: 0028646X     EISSN: 14698137     Source Type: Journal    
DOI: 10.1111/j.1469-8137.2008.02430.x     Document Type: Article

References (47)

1. Amarger N, Macheret V, Laguerre G. 1997. Rhizobium gallicum sp. nov. and Rhizobium giardinii sp. nov., from Phaseolus vulgaris nodules. International Journal of Systematic Bacteriology 47 : 996 1006.
2. Baudoin E, Benizri E, Guckert A. 2001. Metabolic fingerprint of microbial communities from distinct maize rhizosphere compartments. European Journal of Soil Biology 37 : 85 93.
3. Begum AA, Leibovitch S, Migner P, Zhang F. 2001. Specific flavonoids induced nod gene expression and pre-activated nod genes of Rhizobium leguminosarum increased pea (Pisum sativum L.) and lentil (Lens culinaris L.) nodulation in controlled growth chamber environments. Journal of Experimental Botany 52 : 1537 1543.
4. van Berkum P, Eardly BD. 1998. Molecular evolutionary systematics of the Rhizobiaceae. In : Spaink HP, Kondorosi A, Hooykaas JJ, eds. The Rhizobiaceae molecular biology of model plant-associated bacteria. Dordrecht, the Netherlands : Kluwer Academic Publishers, 1 24.
5. Bourion V, Laguerre G, Depret G, Voisin A-S, Salon C, Duc G. 2007. Genetic variability in nodulation and root growth affects nitrogen fixation and accumulation in pea. Annals of Botany 100 : 589 598.
6. Broughton WJ, Jabbouri S, Perret X. 2000. Keys to symbiotic harmony. Journal of Bacteriology 182 : 5641 5652.
7. Cooper JE. 2004. Multiple responses of rhizobia to flavonoids during legume root infection. Advances in Botanical Research: Incorporating Advances in Plant Pathology 41 : 1 62.
8. Cooper JE. 2007. Early interactions between legumes and rhizobia: disclosing complexity in a molecular dialogue. Journal of Applied Microbiology 103 : 1355 1365.
9. Depret G, Houot S, Allard MR, Breuil MC, Nouaïm R, Laguerre G. 2004. Long-term effects of crop management on Rhizobium leguminosarum biovar viciae populations. FEMS Microbiology Ecology 51 : 87 97.
10. Gransee A, Wittenmayer L. 2000. Qualitative and quantitative analysis of water-soluble root exudates in relation to plant species and development. Journal of Plant Nutrition and Soil Science 163 : 381 385.
11. Grayston SJ, Wang SQ, Campbell CD, Edwards AC. 1998. Selective influence of plant species on microbial diversity in the rhizosphere. Soil Biology & Biochemistry 30 : 369 378.
12. Hamlen RA, Lukezic FL, Bloom JR. 1972. Influence of age and stage of development on the neutral carbohydrate components in root exudates from alfalfa plants grown in a gnotobiotic environment. Canadian Journal of Plant Science 52 : 633 642.
13. Handley BA, Hedges AJ, Beringer JE. 1998. Importance of host plants for detecting the population diversity of Rhizobium leguminosarum biovar viciae in soil. Soil Biology & Biochemistry 30 : 241 249.
14. 2 fixation. Crop Science 22 : 55 58.
15. Herrera-Cervera JA, Caballero-Mellado J, Laguerre G, Tichy HV, Requena N, Amarger N, Martinez-Romero E, Olivares J, Sanjuan J. 1999. At least five rhizobial species nodulate Phaseolus vulgaris in a Spanish soil. FEMS Microbiology Ecology 30 : 87 97.
16. Hill MO. 1973. Diversity and evenness: a unifying notation and its consequences. Ecology 54 : 427 432.
17. Hirsch AM, Bauer WD, Bird DM, Cullimore J, Tyler B, Yoder JI. 2003. Molecular signals and receptors: controlling rhizosphere interactions between plants and other organisms. Ecology 84 : 858 868.
18. Hütsch BW, Augustin J, Merbach W. 2002. Plant rhizodeposition - an important source for carbon turnover in soils. Journal of Plant Nutrition and Soil Science 165 : 397 407.
19. Hynes MF, O'Connell MP. 1990. Host plant effect on competition among strains of Rhizobium leguminosarum. Canadian Journal of Microbiology 36 : 864 869.
20. Kiers ET, Hutton MG, Denison FR. 2007. Human selection and the relaxation of legume defences against ineffective rhizobia. Proceedings of the Royal Society B-Biological Sciences 274 : 3119 3126.
21. Kiers ET, Rousseau RA, West SA, Denison FR. 2003. Host sanctions and the legume-Rhizobium mutualism. Nature 425 : 78 81.
22. Kiers ET, Rousseau RA, West SA, Denison FR. 2006. Measured sanctions: legume hosts detect quantitative variation in Rhizobium cooperation and punish accordingly. Evolutionary Ecology Research 8 : 1077 1086.
23. Kumar S, Tamura K, Nei M. 2004. MEGA3: integrated software for Molecular Evolutionary Genetics Analysis and sequence alignment. Briefings in Bioinformatics 5 : 150 163.
24. Laguerre G, Depret G, Bourion V, Duc G. 2007. Rhizobium leguminosarum bv. viciae genotypes interact with pea plants in developmental responses of nodules, roots and shoots. New Phytologist 176 : 680 690.
25. Laguerre G, Geniaux E, Mazurier SI, Rodriguez Casartelli R, Amarger N. 1993. Conformity and diversity among field isolates of Rhizobium leguminosarum bv. viciae, bv. trifolii, and bv. phaseoli revealed by DNA hybridization using chromosome and plasmid probes. Canadian Journal of Microbiology 39 : 412 419.
26. Laguerre G, Louvrier P, Amarger N. 2003. Compatibility of rhizobial genotypes within natural populations of Rhizobium leguminosarum biovar viciae for nodulation of host legumes. Applied and Environmental Microbiology 69 : 2276 2283.
27. Laguerre G, Mavingui P, Allard MR, Charnay MP, Louvrier P, Mazurier SI, Rigottier-Gois L, Amarger N. 1996. Typing of rhizobia by PCR DNA fingerprinting and PCR-RFLP analysis of chromosomal and symbiotic gene regions: application to Rhizobium leguminosarum and its different biovars. Applied and Environmental Microbiology 62 : 2029 2036.
28. Laguerre G, Mazurier SI, Amarger N. 1992. Plasmid profiles and restriction fragment length polymorphism of Rhizobium leguminosarum bv. viciae in field populations. FEMS Microbiology Ecology 101 : 17 26.
29. Louvrier P, Laguerre G, Amarger N. 1995. Semiselective medium for isolation of Rhizobium leguminosarum from soils. Soil Biology & Biochemistry 27 : 919 924.
30. Louvrier P, Laguerre G, Amarger N. 1996. Distribution of symbiotic genotypes in Rhizobium leguminosarum biovar viciae populations isolated directly from soils. Applied and Environmental Microbiology 62 : 4202 4205.
31. Mhamdi R, Laguerre G, Aouani ME, Mars M, Amarger N. 2002. Different species and symbiotic genotypes of field rhizobia can nodulate Phaseolus vulgaris in Tunisian soils. FEMS Microbiology Ecolology 41 : 77 84.
32. Mougel C, Offre P, Ranjard L, Corberand T, Gamalero E, Robin C, Lemanceau P. 2006. Dynamic of the genetic structure of bacterial and fungal communities at different developmental stages of Medicago truncatula Gaertn. cv. Jemalong line J5. New Phytologist 170 : 165 175.
33. Mutch LA, Young JPW. 2004. Diversity and specificity of Rhizobium leguminosarum biovar viciae on wild and cultivated legumes. Molecular Ecology 13 : 2435 2444.
34. Novak K, Chovanec P, Skrdleta V, Kropacova M, Lisa L, Nemcova M. 2002. Effect of exogenous flavonoids on nodulation of pea (Pisum sativum L.). Journal of Experimental Botany 53 : 1735 1745.
35. Oka-Kira E, Kawaguchi M. 2006. Long-distance signaling to control root nodule number. Current Opinion in Plant Biology 9 : 496 502.
36. Palmer KM, Young JPW. 2000. Higher diversity of Rhizobium leguminosarum biovar viciae populations in arable soils than in grass soils. Applied and Environmental Microbiology 66 : 2445 2450.
37. Sagan M, Gresshoff PM. 1996. Developmental mapping of nodulation events in pea (Pisum sativum L.) using supernodulating plant genotypes and bacterial variability reveals both plant and Rhizobium control of nodulation regulation. Plant Science 117 : 167 179.
38. Schneider S, Roessli D, Excoffier L. 2000. arlequin ver. 2.000: a software for population data analysis. Geneva, Switzerland : Genetics and Biometry Laboratory, University of Geneva.
39. Simms EL, Taylor DL, Povich J, Shefferson RP, Sachs JL, Urbina M, Tausczik Y. 2006. An empirical test of partner choice mechanisms in a wild legume-Rhizobium interaction. Proceedings of the Royal Society B, Biological Sciences 273 : 77 81.
40. Spaink HP, Wijffelman CA, Okker RJH, Lugtenberg BEJ. 1989. Localization of functional regions of the Rhizobium nodD product using hybrid nodD genes. Plant Molecular Biology 12 : 59 73.
41. Thompson JD, Higgins DG, Gibson TJ. 1994. clustal w: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Research 22 : 4673 4680.
42. Voisin A-S, Bourion V, Duc G, Salon C. 2007. Using an ecological analysis to dissect genetic variability and to propose an ideotype for nitrogen nutrition in pea. Annals of Botany 100 : 1525 1536.
43. Wieland G, Neumann R, Backhaus H. 2001. Variation of microbial communities in soil, rhizosphere, and rhizoplane in response to crop species, soil type, and crop development. Applied and Environmental Microbiology 67 : 5849 5854.
44. Wielbo J, Marek-Kozaczuk M, Kubik-Komar A, Skorupska A. 2007. Increased metabolic potential of Rhizobium spp. is associated with bacterial competitiveness. Canadian Journal of Microbiology 53 : 957 967.
45. Yang CH, Crowley DE. 2000. Rhizosphere microbial community structure in relation to root location and plant iron nutritional status. Applied and Environmental Microbiology 66 : 345 351.
46. Young JPW, Wexler M. 1988. Sym plasmid and chromosomal genotypes are correlated in field populations of Rhizobium leguminosarum. Journal of General Microbiology 134 : 2731 2739.
47. Young JPW, Demetriou L, Apte RG. 1987. Rhizobium population genetics: enzyme polymorphism in Rhizobium leguminosarum from plants and soil in a pea crop. Applied and Environmental Microbiology 53 : 397 402.