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Volumn 5, Issue DEC, 2007, Pages 474-483

Development and field assessment of a quantitative PCR for the detection and enumeration of the noxious bloom-former Anabaena planktonica

Author keywords

[No Author keywords available]

Indexed keywords

ANABAENA; ANABAENA PLANKTONICA; CYANOBACTERIA;

EID: 44649120861     PISSN: 15415856     EISSN: 15415856     Source Type: Journal    
DOI: 10.4319/lom.2007.5.474     Document Type: Article
Times cited : (24)

References (49)
  • 1
    • 0000429385 scopus 로고
    • DNA content of soil bacteria of different cell size
    • Bakken, L. R., and R. A. Olsen. 1989. DNA content of soil bacteria of different cell size. Soil Biol. Biochem. 21:789-793.
    • (1989) Soil Biol. Biochem , vol.21 , pp. 789-793
    • Bakken, L.R.1    Olsen, R.A.2
  • 2
    • 0029805581 scopus 로고    scopus 로고
    • Isolation and purification of Australian isolates of the toxic cyanobacterium Microcystis aeruginosa Kütz
    • Bolch, C. J. S., and S. I. Blackburn. 1996. Isolation and purification of Australian isolates of the toxic cyanobacterium Microcystis aeruginosa Kütz. J. Appl. Phycol. 8:5-13.
    • (1996) J. Appl. Phycol , vol.8 , pp. 5-13
    • Bolch, C.J.S.1    Blackburn, S.I.2
  • 4
    • 14644411765 scopus 로고    scopus 로고
    • Cyanobacterial toxins: Risk management for health protection
    • Codd, G. A., L. F. Morrison, and J. S. Metcalf. 2005. Cyanobacterial toxins: risk management for health protection. Toxicol. Appl. Pharmacol. 203:264-272.
    • (2005) Toxicol. Appl. Pharmacol , vol.203 , pp. 264-272
    • Codd, G.A.1    Morrison, L.F.2    Metcalf, J.S.3
  • 5
    • 0035908647 scopus 로고    scopus 로고
    • Assessing temporal and spatial variability in Pfiesteria piscicida distributions using molecular probing techniques
    • Coyne, K., D. A. Hutchins, C. Hare, and C. Cary. 2001. Assessing temporal and spatial variability in Pfiesteria piscicida distributions using molecular probing techniques. Aquat. Microb. Ecol. 24:275-285.
    • (2001) Aquat. Microb. Ecol , vol.24 , pp. 275-285
    • Coyne, K.1    Hutchins, D.A.2    Hare, C.3    Cary, C.4
  • 8
    • 33748939919 scopus 로고    scopus 로고
    • Créach, V., E. Ernst, K. Sabbe, B. Vanelslander, W. Vyverman, L. J. Stal. 2006. Using quantitative PCR to determine the distribution of a semicryptic benthic diatom, Navicula phyllepta (Bacillariophyceae). J. Phycol. 42:1142-1154.
    • Créach, V., E. Ernst, K. Sabbe, B. Vanelslander, W. Vyverman, L. J. Stal. 2006. Using quantitative PCR to determine the distribution of a semicryptic benthic diatom, Navicula phyllepta (Bacillariophyceae). J. Phycol. 42:1142-1154.
  • 9
    • 0036431389 scopus 로고    scopus 로고
    • Quantification of microcystin-producing cyanobacteria and E. coli in water by 5'-nuclease PCR
    • Foulds, I. V., A. Granacki, C. Xiao, U. J. Krull, A. Castle, and P. A. Horgen. 2002. Quantification of microcystin-producing cyanobacteria and E. coli in water by 5'-nuclease PCR. J. Appl. Microbiol. 93:825-834.
    • (2002) J. Appl. Microbiol , vol.93 , pp. 825-834
    • Foulds, I.V.1    Granacki, A.2    Xiao, C.3    Krull, U.J.4    Castle, A.5    Horgen, P.A.6
  • 10
  • 11
    • 34250349037 scopus 로고    scopus 로고
    • Diversity of Microcystis aeruginosa isolates (Chroococcales, Cyanobacteria) from East-African water bodies
    • Haande, S., A. Ballot, T. Rohrlack, J. Fastner, C. Wiedner, and B. Edvardsen. 2007. Diversity of Microcystis aeruginosa isolates (Chroococcales, Cyanobacteria) from East-African water bodies. Arch. Microbiol. 188:15-25.
    • (2007) Arch. Microbiol , vol.188 , pp. 15-25
    • Haande, S.1    Ballot, A.2    Rohrlack, T.3    Fastner, J.4    Wiedner, C.5    Edvardsen, B.6
  • 12
    • 0030620394 scopus 로고    scopus 로고
    • Prediction of water quality in lakes and reservoirs. Part I - Model description
    • Hamilton D. P., and S. G. Schladow. 1997. Prediction of water quality in lakes and reservoirs. Part I - Model description. Ecological Modelling. 96:91-110.
    • (1997) Ecological Modelling , vol.96 , pp. 91-110
    • Hamilton, D.P.1    Schladow, S.G.2
  • 13
    • 44649101849 scopus 로고    scopus 로고
    • Top down or bottom up? Feasibility of water clarity restoration in the lower Karori Reservoir by fish removal
    • CBER Contract Report No. 54, Centre for Biodiversity and Ecology Research, Department of Biological Sciences, School of Science and Engineering, The University of Waikato, Hamilton
    • Hicks, B. J., D. Hamilton, N. Ling, and S. Wood. 2007. Top down or bottom up? Feasibility of water clarity restoration in the lower Karori Reservoir by fish removal. CBER Contract Report No. 54. Report prepared for the Karori Wildlife Sanctuary Trust. Centre for Biodiversity and Ecology Research, Department of Biological Sciences, School of Science and Engineering, The University of Waikato, Hamilton.
    • (2007) Report prepared for the Karori Wildlife Sanctuary Trust
    • Hicks, B.J.1    Hamilton, D.2    Ling, N.3    Wood, S.4
  • 14
    • 0003706649 scopus 로고    scopus 로고
    • Land and Water Resources Research and Development Corporation Occasional Paper 22/99, Canberra, Australia. 58 pp
    • Hötzel, G. and R., Croome. 1999. A phytoplankton method manual for Australian freshwaters. Land and Water Resources Research and Development Corporation Occasional Paper 22/99, Canberra, Australia. 58 pp.
    • (1999) A phytoplankton method manual for Australian freshwaters
    • Hötzel, G.1    Croome, R.2
  • 15
    • 0034129537 scopus 로고    scopus 로고
    • Comparison of conserved structural and regulatory domains within divergent 16S rRNA-23S rRNA spacer sequences of cyanobacteria
    • Iteman, I., R. Rippka, N. Tandeau de Marsac, and M. Herdman. 2000. Comparison of conserved structural and regulatory domains within divergent 16S rRNA-23S rRNA spacer sequences of cyanobacteria. Microbiology 146: 1275-1286.
    • (2000) Microbiology , vol.146 , pp. 1275-1286
    • Iteman, I.1    Rippka, R.2    Tandeau de Marsac, N.3    Herdman, M.4
  • 16
    • 0242405735 scopus 로고    scopus 로고
    • High-resolution differentiation of cyanobacteria by using rRNA-internal transcribed spacer denaturing gradient gel electrophoresis
    • Janse, I., M. Meima, W. E. A. Kardinaal, and G. Zwart. 2003. High-resolution differentiation of cyanobacteria by using rRNA-internal transcribed spacer denaturing gradient gel electrophoresis. Appl. Environ. Microbiol. 69:6634-6643.
    • (2003) Appl. Environ. Microbiol , vol.69 , pp. 6634-6643
    • Janse, I.1    Meima, M.2    Kardinaal, W.E.A.3    Zwart, G.4
  • 17
    • 0027461618 scopus 로고
    • Rapid identification of bacteria on the basis of polymerase chain reaction-amplified ribosomal DNA spacer polymorphisms
    • Jensen, M. A., J. A. Webster, and Straus. 1993. Rapid identification of bacteria on the basis of polymerase chain reaction-amplified ribosomal DNA spacer polymorphisms. Appl Environ Microbiol. 59:945-52.
    • (1993) Appl Environ Microbiol , vol.59 , pp. 945-952
    • Jensen, M.A.1    Webster, J.A.2    Straus3
  • 21
    • 34447518810 scopus 로고    scopus 로고
    • New Zealand's risk management approach and regulatory approach for toxic cyanobacteria in drinking water
    • Kouzminov, A., J. Ruck, and S. A. Wood. 2007. New Zealand's risk management approach and regulatory approach for toxic cyanobacteria in drinking water. Australian and New Zealand Journal of Public Health. 31:275-281.
    • (2007) Australian and New Zealand Journal of Public Health , vol.31 , pp. 275-281
    • Kouzminov, A.1    Ruck, J.2    Wood, S.A.3
  • 22
    • 0347927723 scopus 로고    scopus 로고
    • The abundance of microcystin-producing genotypes correlates positively with colony size in Microcystis sp. and determines its microcystin net production in Lake Wannsee
    • Kurmayer, R., G. Christiansen, and I. Chorus. 2003. The abundance of microcystin-producing genotypes correlates positively with colony size in Microcystis sp. and determines its microcystin net production in Lake Wannsee. Appl. Environ. Microbiol. 69:787-795.
    • (2003) Appl. Environ. Microbiol , vol.69 , pp. 787-795
    • Kurmayer, R.1    Christiansen, G.2    Chorus, I.3
  • 23
    • 0242657482 scopus 로고    scopus 로고
    • Application of real-time PCR for quantification of microcystin genotypes in a population of the toxic cyanobacterium Microcystis sp
    • _ _ _, and T. Kutzenberger. 2003. Application of real-time PCR for quantification of microcystin genotypes in a population of the toxic cyanobacterium Microcystis sp. Appl. Environ. Microbiol. 69:6723-6730.
    • (2003) Appl. Environ. Microbiol , vol.69 , pp. 6723-6730
    • Kurmayer, R.1    Christiansen, G.2    Chorus, I.3    Kutzenberger, T.4
  • 25
    • 4344700215 scopus 로고    scopus 로고
    • Evaluating real-time PCR for the quantification of distinct pathogens and indicator organisms in environmental samples
    • Lebuhn, M., M. Effenberger, G. Garcés, A. Gronauer, and P. A. Wilderer. 2004. Evaluating real-time PCR for the quantification of distinct pathogens and indicator organisms in environmental samples. Water Sci. Technol. 50:263-270.
    • (2004) Water Sci. Technol , vol.50 , pp. 263-270
    • Lebuhn, M.1    Effenberger, M.2    Garcés, G.3    Gronauer, A.4    Wilderer, P.A.5
  • 26
    • 0035710746 scopus 로고    scopus 로고
    • Analysis of relative gene expression data using RT PCR and the 2-ddCt method
    • Livak, K. J., and T. D. Schmittgen. 2001. Analysis of relative gene expression data using RT PCR and the 2-ddCt method. Methods 25:402-408.
    • (2001) Methods , vol.25 , pp. 402-408
    • Livak, K.J.1    Schmittgen, T.D.2
  • 27
    • 0034488341 scopus 로고    scopus 로고
    • How quantitative is quantitative PCR with respect to cell counts?
    • Ludwig, W., and K. H. Schleifer. 2000. How quantitative is quantitative PCR with respect to cell counts? Syst. Appl. Microbiol. 23:556-562.
    • (2000) Syst. Appl. Microbiol , vol.23 , pp. 556-562
    • Ludwig, W.1    Schleifer, K.H.2
  • 28
    • 0002299204 scopus 로고
    • Phytoplankton sampling with the Sedgwick-Rafter cell
    • McAlice, B. 1971. Phytoplankton sampling with the Sedgwick-Rafter cell. Limnol. Oceanogr. 16:19-28.
    • (1971) Limnol. Oceanogr , vol.16 , pp. 19-28
    • McAlice, B.1
  • 29
    • 0027460328 scopus 로고
    • Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA
    • Muyzer, G., E. C. de Waal, and A. G. Uitterlinden. 1993. Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA. Appl Environ Microbiol. 59:695-700.
    • (1993) Appl Environ Microbiol , vol.59 , pp. 695-700
    • Muyzer, G.1    de Waal, E.C.2    Uitterlinden, A.G.3
  • 30
    • 0032143012 scopus 로고    scopus 로고
    • Utility of 16S-23S rRNA spacer region methodology: How similar are interspace regions within a genome and between strains for closely related organisms?
    • Nagpal, M. L., K. F. Fox, and A. Fox. 1998. Utility of 16S-23S rRNA spacer region methodology: how similar are interspace regions within a genome and between strains for closely related organisms? J. Microbiol. Methods 33:211-219.
    • (1998) J. Microbiol. Methods , vol.33 , pp. 211-219
    • Nagpal, M.L.1    Fox, K.F.2    Fox, A.3
  • 31
    • 0001320429 scopus 로고    scopus 로고
    • Freshwater blooms
    • B. A. Whitton, and M. Potts [eds, Kluwer Academic
    • Oliver, R. L., and G. G. Ganf. 2000. Freshwater blooms, pp. 149-194. In B. A. Whitton, and M. Potts [eds.], The ecology of cyanobacteria, Kluwer Academic.
    • (2000) The ecology of cyanobacteria , pp. 149-194
    • Oliver, R.L.1    Ganf, G.G.2
  • 32
  • 33
    • 2542462652 scopus 로고    scopus 로고
    • The use of quantitative polymerase chain reaction for the detection and enumeration of the harmful alga Aureococcus anophagefferens in environmental samples along the United States East Coast. Limnol. Oceanogr
    • Popels L.C., S. C. Cary, D. A. Hutchins, R. Forbes, F. Pustizzi, C. J. Gobler, and K. J. Coyne. 2003.The use of quantitative polymerase chain reaction for the detection and enumeration of the harmful alga Aureococcus anophagefferens in environmental samples along the United States East Coast. Limnol. Oceanogr.: Methods 1:92-102.
    • (2003) Methods , vol.1 , pp. 92-102
    • Popels, L.C.1    Cary, S.C.2    Hutchins, D.A.3    Forbes, R.4    Pustizzi, F.5    Gobler, C.J.6    Coyne, K.J.7
  • 34
    • 33745184175 scopus 로고    scopus 로고
    • Limnological characteristics, eutrophication and cyanobacterial blooms in an inland reservoir, Australia. Lakes & Reservoirs
    • Rahman, A. K. M., D. A. Bakri, P. Ford, and T. Church. 2005. Limnological characteristics, eutrophication and cyanobacterial blooms in an inland reservoir, Australia. Lakes & Reservoirs: Research & Management 10:211-220
    • (2005) Research & Management , vol.10 , pp. 211-220
    • Rahman, A.K.M.1    Bakri, D.A.2    Ford, P.3    Church, T.4
  • 35
    • 20044384537 scopus 로고    scopus 로고
    • Quantification of toxic Microcystis spp. during the 2003 and 2004 blooms in western Lake Erie using quantitative real-time PCR
    • Rinta-Kanto, J. M., A. J. A. Ouellette, G. L. Boyer, M. R. Twiss, T. B. Bridgeman, and S. W. Wilhelm. 2005. Quantification of toxic Microcystis spp. during the 2003 and 2004 blooms in western Lake Erie using quantitative real-time PCR. Environ. Sci. Tech. 39:4198-4205.
    • (2005) Environ. Sci. Tech , vol.39 , pp. 4198-4205
    • Rinta-Kanto, J.M.1    Ouellette, A.J.A.2    Boyer, G.L.3    Twiss, M.R.4    Bridgeman, T.B.5    Wilhelm, S.W.6
  • 37
    • 0030620393 scopus 로고    scopus 로고
    • Prediction of water quality in lakes and reservoirs: Part II - Model calibration, sensitivity analysis and application
    • Schladow S. G., and D. P. Hamilton. 1997. Prediction of water quality in lakes and reservoirs: Part II - Model calibration, sensitivity analysis and application. Ecological Modelling. 96:111-123.
    • (1997) Ecological Modelling , vol.96 , pp. 111-123
    • Schladow, S.G.1    Hamilton, D.P.2
  • 38
    • 33646836436 scopus 로고    scopus 로고
    • Cyanobacterial blooms appear to be driven by top-down rather than bottom-up effects in the Lower Karori Reservoir (Wellington, New Zealand)
    • Smith, K. F., and P. J. Lester. 2006. Cyanobacterial blooms appear to be driven by top-down rather than bottom-up effects in the Lower Karori Reservoir (Wellington, New Zealand). New Zealand Journal of Marine and Freshwater Research. 40:53-63.
    • (2006) New Zealand Journal of Marine and Freshwater Research , vol.40 , pp. 53-63
    • Smith, K.F.1    Lester, P.J.2
  • 39
    • 33847753060 scopus 로고    scopus 로고
    • Addressing public health risks for cyanobacteria in recreational freshwaters: The Oregon and Vermont framework
    • Stone, D., and W Bress. 2007. Addressing public health risks for cyanobacteria in recreational freshwaters: the Oregon and Vermont framework. Integr. Environ. Assess. Manag. 3: 137-143.
    • (2007) Integr. Environ. Assess. Manag , vol.3 , pp. 137-143
    • Stone, D.1    Bress, W.2
  • 40
    • 0141606930 scopus 로고    scopus 로고
    • Cyanobacterial Diversity in Natural and Artificial Microbial Mats of Lake Fryxell (McMurdo Dry Valleys, Antarctica): A Morphological and Molecular Approach
    • Taton, A., S. Grubisic, E. Brambilla, R. De Wit, and A. Wilmotte. 2003. Cyanobacterial Diversity in Natural and Artificial Microbial Mats of Lake Fryxell (McMurdo Dry Valleys, Antarctica): a Morphological and Molecular Approach. Appl. Environ. Microbiol. 69:5157-5169.
    • (2003) Appl. Environ. Microbiol , vol.69 , pp. 5157-5169
    • Taton, A.1    Grubisic, S.2    Brambilla, E.3    De Wit, R.4    Wilmotte, A.5
  • 41
    • 0027968068 scopus 로고
    • CLUSTALW: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
    • Thompson, J., D. Higgins, and T.J. Gibson. 1994. CLUSTALW: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22:4673-4680.
    • (1994) Nucleic Acids Res , vol.22 , pp. 4673-4680
    • Thompson, J.1    Higgins, D.2    Gibson, T.J.3
  • 43
    • 2142860222 scopus 로고    scopus 로고
    • Quantitative real-time PCR for determination of microcystin synthetase E copy numbers for Microcystis and Anabaena in lakes
    • Vaitomaa, J., A. Rantala, K. Halinen, L. Rouhianen, P. Tallberg, L. Mokelke, and K. Sivonen. 2003. Quantitative real-time PCR for determination of microcystin synthetase E copy numbers for Microcystis and Anabaena in lakes. Appl. Environ. Microbiol. 69:7289-7297.
    • (2003) Appl. Environ. Microbiol , vol.69 , pp. 7289-7297
    • Vaitomaa, J.1    Rantala, A.2    Halinen, K.3    Rouhianen, L.4    Tallberg, P.5    Mokelke, L.6    Sivonen, K.7
  • 44
    • 6944241695 scopus 로고    scopus 로고
    • Harmful blooms of cyanobacteria (Oscillatoriaceae) and dinoflagellates (Gymnodiniaceae) in the Golfo de Nicoya, Costa Rica
    • Vargas-Montero, M., and E. Freer. 2004. Harmful blooms of cyanobacteria (Oscillatoriaceae) and dinoflagellates (Gymnodiniaceae) in the Golfo de Nicoya, Costa Rica. Rev. Biol. Trop. 52:121-125.
    • (2004) Rev. Biol. Trop , vol.52 , pp. 121-125
    • Vargas-Montero, M.1    Freer, E.2
  • 48
    • 0028002103 scopus 로고
    • Use of ribosomal DNA internal transcribed spacer for phylogenetic studies in diatoms
    • Zechman, F. W., E. A. Zimmer, and E. C. Theriot. 1994. Use of ribosomal DNA internal transcribed spacer for phylogenetic studies in diatoms. J. Phycol. 30:507-512.
    • (1994) J. Phycol , vol.30 , pp. 507-512
    • Zechman, F.W.1    Zimmer, E.A.2    Theriot, E.C.3
  • 49
    • 33846589859 scopus 로고    scopus 로고
    • Bioaccumulation of the hepatotoxic microcystins in various organs of a freshwater snail from a subtropical Chinese lake, Taihu Lake, with dense toxic Microcystis blooms
    • Zhang, D., P. Xie., Y. Liu, J. Chen, and G. Liang. 2007. Bioaccumulation of the hepatotoxic microcystins in various organs of a freshwater snail from a subtropical Chinese lake, Taihu Lake, with dense toxic Microcystis blooms. Environ. Toxicol. Chem. 26:171-176.
    • (2007) Environ. Toxicol. Chem , vol.26 , pp. 171-176
    • Zhang, D.1    Xie, P.2    Liu, Y.3    Chen, J.4    Liang, G.5


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