-
3
-
-
0037316303
-
A comparison of normalization methods for high density oligonucleotide array data based on variance and bias
-
Bolstad B.M., Irizarry R.A., Astrand M., and Speed T.P. A comparison of normalization methods for high density oligonucleotide array data based on variance and bias. Bioinformatics 19 (2003) 185-193
-
(2003)
Bioinformatics
, vol.19
, pp. 185-193
-
-
Bolstad, B.M.1
Irizarry, R.A.2
Astrand, M.3
Speed, T.P.4
-
4
-
-
0020684344
-
High-dose methotrexate for osteosarcoma: toxicity and clinical results
-
Breithaupt H., and Küenzlen E. High-dose methotrexate for osteosarcoma: toxicity and clinical results. Oncology 40 (1983) 85-89
-
(1983)
Oncology
, vol.40
, pp. 85-89
-
-
Breithaupt, H.1
Küenzlen, E.2
-
5
-
-
0018828439
-
Metabolism of methotrexate in man after high and conventional doses
-
Chan K.K., Nayar M.S., Cohen J.L., Chlebowski R.T., Liebman H., Stolinsky D., Mitchell M.S., and Farquhar D. Metabolism of methotrexate in man after high and conventional doses. Res. Commun. Chem. Pathol. Pharmacol. 28 (1980) 551-561
-
(1980)
Res. Commun. Chem. Pathol. Pharmacol.
, vol.28
, pp. 551-561
-
-
Chan, K.K.1
Nayar, M.S.2
Cohen, J.L.3
Chlebowski, R.T.4
Liebman, H.5
Stolinsky, D.6
Mitchell, M.S.7
Farquhar, D.8
-
6
-
-
31344437783
-
Protection against fatty liver but normal adipogenesis in mice lacking adipose differentiation-related protein
-
Chang B.H., Li L., Paul A., Taniguchi S., Nannegari V., Heird W.C., and Chan L. Protection against fatty liver but normal adipogenesis in mice lacking adipose differentiation-related protein. Mol. Cell Biol. 26 (2006) 1063-1076
-
(2006)
Mol. Cell Biol.
, vol.26
, pp. 1063-1076
-
-
Chang, B.H.1
Li, L.2
Paul, A.3
Taniguchi, S.4
Nannegari, V.5
Heird, W.C.6
Chan, L.7
-
7
-
-
30944453514
-
Exploration of global gene expression in human liver steatosis by high-density oligonucleotide microarray
-
Chiappini F., Barrier A., Saffroy R., Domart M.C., Dagues N., Azoulay D., Sebagh M., Franc B., Chevalier S., Debuire B., Dudoit S., and Lemoine A. Exploration of global gene expression in human liver steatosis by high-density oligonucleotide microarray. Lab. Invest. 86 (2006) 154-165
-
(2006)
Lab. Invest.
, vol.86
, pp. 154-165
-
-
Chiappini, F.1
Barrier, A.2
Saffroy, R.3
Domart, M.C.4
Dagues, N.5
Azoulay, D.6
Sebagh, M.7
Franc, B.8
Chevalier, S.9
Debuire, B.10
Dudoit, S.11
Lemoine, A.12
-
8
-
-
0026590008
-
Biochemical effects of methotrexate in isolated hepatocytes in relation to its steatogenic activity
-
Deboyser D., Goethals F., and Roberfroid M. Biochemical effects of methotrexate in isolated hepatocytes in relation to its steatogenic activity. Toxicol. In Vitro 6 (1992) 129-132
-
(1992)
Toxicol. In Vitro
, vol.6
, pp. 129-132
-
-
Deboyser, D.1
Goethals, F.2
Roberfroid, M.3
-
9
-
-
0038005018
-
DAVID: database for annotation, visualization, and integrated discovery
-
Dennis Jr. G., Sherman B.T., Hosack D.A., Yang J., Gao W., Lane H.C., and Lempicki R.A. DAVID: database for annotation, visualization, and integrated discovery. Genome Biol. 4 (2003) P3
-
(2003)
Genome Biol.
, vol.4
-
-
Dennis Jr., G.1
Sherman, B.T.2
Hosack, D.A.3
Yang, J.4
Gao, W.5
Lane, H.C.6
Lempicki, R.A.7
-
10
-
-
0037577517
-
Plasma phospholipid transfer protein. Adenovirus-mediated overexpression in mice leads to decreased plasma high density lipoprotein (HDL) and enhanced hepatic uptake of phospholipids and cholesteryl esters from HDL
-
Foger B., Santamarina-Fojo S., Shamburek R.D., Parrot C.L., Talley G.D., and Brewer Jr. H.B. Plasma phospholipid transfer protein. Adenovirus-mediated overexpression in mice leads to decreased plasma high density lipoprotein (HDL) and enhanced hepatic uptake of phospholipids and cholesteryl esters from HDL. J. Biol. Chem. 272 (1997) 27393-27400
-
(1997)
J. Biol. Chem.
, vol.272
, pp. 27393-27400
-
-
Foger, B.1
Santamarina-Fojo, S.2
Shamburek, R.D.3
Parrot, C.L.4
Talley, G.D.5
Brewer Jr., H.B.6
-
11
-
-
0034043034
-
Mechanisms of action of methotrexate
-
Genestier L., Paillot R., Quemeneur L., Izeradjene K., and Revillard J.P. Mechanisms of action of methotrexate. Immunopharmacology 47 (2000) 247-257
-
(2000)
Immunopharmacology
, vol.47
, pp. 247-257
-
-
Genestier, L.1
Paillot, R.2
Quemeneur, L.3
Izeradjene, K.4
Revillard, J.P.5
-
12
-
-
33846018073
-
Kinase-independent function of cyclin E
-
Geng Y., Lee Y.M., Welcker M., Swanger J., Zagozdzon A., Winer J.D., Roberts J.M., Kaldis P., Clurman B.E., and Sicinski P. Kinase-independent function of cyclin E. Mol. Cell 25 (2007) 127-139
-
(2007)
Mol. Cell
, vol.25
, pp. 127-139
-
-
Geng, Y.1
Lee, Y.M.2
Welcker, M.3
Swanger, J.4
Zagozdzon, A.5
Winer, J.D.6
Roberts, J.M.7
Kaldis, P.8
Clurman, B.E.9
Sicinski, P.10
-
13
-
-
0026755383
-
Cell cycle-related expression of p120 nucleolar antigen in normal human lymphocytes and in cells of HL-60 and MOLT-4 leukemic lines: effects of methotrexate, camptothecin, and teniposide
-
Gorczyca W., Bruno S., Melamed M.R., and Darzynkiewicz Z. Cell cycle-related expression of p120 nucleolar antigen in normal human lymphocytes and in cells of HL-60 and MOLT-4 leukemic lines: effects of methotrexate, camptothecin, and teniposide. Cancer Res. 52 (1992) 3491-3494
-
(1992)
Cancer Res.
, vol.52
, pp. 3491-3494
-
-
Gorczyca, W.1
Bruno, S.2
Melamed, M.R.3
Darzynkiewicz, Z.4
-
14
-
-
2142639373
-
Gene expression profiling reveals multiple toxicity endpoints induced by hepatotoxicants
-
Huang Q., Jin X., Gaillard E.T., Knight B.L., Pack F.D., Stoltz J.H., Jayadev S., and Blanchard K.T. Gene expression profiling reveals multiple toxicity endpoints induced by hepatotoxicants. Mutat. Res. 549 (2004) 147-167
-
(2004)
Mutat. Res.
, vol.549
, pp. 147-167
-
-
Huang, Q.1
Jin, X.2
Gaillard, E.T.3
Knight, B.L.4
Pack, F.D.5
Stoltz, J.H.6
Jayadev, S.7
Blanchard, K.T.8
-
15
-
-
11244346557
-
Variance stabilization applied to microarray data calibration and to the quantification of differential expression
-
Huber W., von Heydebreck A., Sultmann H., Poustka A., and Vingron M. Variance stabilization applied to microarray data calibration and to the quantification of differential expression. Bioinformatics 18 (2002) S96-S104
-
(2002)
Bioinformatics
, vol.18
-
-
Huber, W.1
von Heydebreck, A.2
Sultmann, H.3
Poustka, A.4
Vingron, M.5
-
16
-
-
0028315470
-
The methotrexate story: a paradigm for development of cancer chemotherapeutic agents
-
Huennekens F.M. The methotrexate story: a paradigm for development of cancer chemotherapeutic agents. Adv. Enzyme Regul. 34 (1994) 397-419
-
(1994)
Adv. Enzyme Regul.
, vol.34
, pp. 397-419
-
-
Huennekens, F.M.1
-
17
-
-
0037382785
-
Reduced hepatic tumor incidence in cyclin G1-deficient mice
-
Jensen M.R., Factor V.M., Fantozzi A., Helin K., Huh C.G., and Thorgeirsson S.S. Reduced hepatic tumor incidence in cyclin G1-deficient mice. Hepatology 37 (2003) 862-870
-
(2003)
Hepatology
, vol.37
, pp. 862-870
-
-
Jensen, M.R.1
Factor, V.M.2
Fantozzi, A.3
Helin, K.4
Huh, C.G.5
Thorgeirsson, S.S.6
-
18
-
-
10644256309
-
Structure and function of carnitine acyltransferases
-
Jogl G., Hsiao Y.S., and Tong L. Structure and function of carnitine acyltransferases. Ann. NY Acad. Sci. 1033 (2004) 17-29
-
(2004)
Ann. NY Acad. Sci.
, vol.1033
, pp. 17-29
-
-
Jogl, G.1
Hsiao, Y.S.2
Tong, L.3
-
19
-
-
0034950046
-
Drug-induced liver disorders: implications for drug development and regulation
-
Kaplowitz N. Drug-induced liver disorders: implications for drug development and regulation. Drug Saf. 24 (2001) 483-490
-
(2001)
Drug Saf.
, vol.24
, pp. 483-490
-
-
Kaplowitz, N.1
-
21
-
-
23044488055
-
Plk4 haploinsufficiency causes mitotic infidelity and carcinogenesis
-
Epub 2005
-
Ko M.A., Rosario C.O., Hudson J.W., Kulkarni S., Pollett A., Dennis J.W., and Swallow C.J. Plk4 haploinsufficiency causes mitotic infidelity and carcinogenesis. Nat. Genet. 37 (2005) 883-888 Epub 2005
-
(2005)
Nat. Genet.
, vol.37
, pp. 883-888
-
-
Ko, M.A.1
Rosario, C.O.2
Hudson, J.W.3
Kulkarni, S.4
Pollett, A.5
Dennis, J.W.6
Swallow, C.J.7
-
22
-
-
0035698162
-
Role of non-alcoholic steatohepatitis in methotrexate-induced liver injury
-
Langman G., Hall P.M., and Todd G. Role of non-alcoholic steatohepatitis in methotrexate-induced liver injury. J. Gastroenterol. Hepatol. 16 (2001) 1395-1401
-
(2001)
J. Gastroenterol. Hepatol.
, vol.16
, pp. 1395-1401
-
-
Langman, G.1
Hall, P.M.2
Todd, G.3
-
23
-
-
33947224232
-
Gene expression profiles of murine fatty liver induced by the administration of valproic acid
-
Lee M.H., Hong I., Kim M., Lee B.H., Kim J.H., Kang K.S., Kim H.L., Yoon B.I., Chung H., Kong G., and Lee M.O. Gene expression profiles of murine fatty liver induced by the administration of valproic acid. Toxicol. Appl. Pharmacol. 220 (2007) 45-59
-
(2007)
Toxicol. Appl. Pharmacol.
, vol.220
, pp. 45-59
-
-
Lee, M.H.1
Hong, I.2
Kim, M.3
Lee, B.H.4
Kim, J.H.5
Kang, K.S.6
Kim, H.L.7
Yoon, B.I.8
Chung, H.9
Kong, G.10
Lee, M.O.11
-
24
-
-
38649097885
-
Subchronic effects of valproic acid on gene expression profiles for lipid metabolism in mouse liver
-
Lee M.H., Kim M., Lee B.H., Kim J.H., Kang K.S., Kim H.L., Yoon B.I., Chung H., Kong G., and Lee M.O. Subchronic effects of valproic acid on gene expression profiles for lipid metabolism in mouse liver. Toxicol. Appl. Pharmacol. 226 (2007) 271-284
-
(2007)
Toxicol. Appl. Pharmacol.
, vol.226
, pp. 271-284
-
-
Lee, M.H.1
Kim, M.2
Lee, B.H.3
Kim, J.H.4
Kang, K.S.5
Kim, H.L.6
Yoon, B.I.7
Chung, H.8
Kong, G.9
Lee, M.O.10
-
26
-
-
17944364171
-
Angiotensinogen-deficient mice exhibit impairment of diet-induced weight gain with alteration in adipose tissue development and increased locomotor activity
-
Massiera F., Seydoux J., Geloen A., Quignard-Boulange A., Turban S., Saint-Marc P., Fukamizu A., Negrel R., Ailhaud G., and Teboul M. Angiotensinogen-deficient mice exhibit impairment of diet-induced weight gain with alteration in adipose tissue development and increased locomotor activity. Endocrinology 142 (2001) 5220-5225
-
(2001)
Endocrinology
, vol.142
, pp. 5220-5225
-
-
Massiera, F.1
Seydoux, J.2
Geloen, A.3
Quignard-Boulange, A.4
Turban, S.5
Saint-Marc, P.6
Fukamizu, A.7
Negrel, R.8
Ailhaud, G.9
Teboul, M.10
-
27
-
-
13444312083
-
The PANTHER database of protein families, subfamilies, functions and pathways
-
Mi H., Lazareva-Ulitsky B., Loo R., Kejariwal A., Vandergriff J., Rabkin S., Guo N., Muruganujan A., Doremieux O., Campbell M.J., Kitano H., and Thomas P.D. The PANTHER database of protein families, subfamilies, functions and pathways. Nucleic Acids Res. 33 (2005) D284-D288
-
(2005)
Nucleic Acids Res.
, vol.33
-
-
Mi, H.1
Lazareva-Ulitsky, B.2
Loo, R.3
Kejariwal, A.4
Vandergriff, J.5
Rabkin, S.6
Guo, N.7
Muruganujan, A.8
Doremieux, O.9
Campbell, M.J.10
Kitano, H.11
Thomas, P.D.12
-
28
-
-
0032901303
-
Microarrays and toxicology: the advent of toxicogenomics
-
Nuwaysir E.F., Bittner M., Trent J., Barrett J.C., and Afshari C.A. Microarrays and toxicology: the advent of toxicogenomics. Mol. Carcinogen. 24 (1999) 153-159
-
(1999)
Mol. Carcinogen.
, vol.24
, pp. 153-159
-
-
Nuwaysir, E.F.1
Bittner, M.2
Trent, J.3
Barrett, J.C.4
Afshari, C.A.5
-
29
-
-
0032919364
-
KEGG: Kyoto encyclopedia of genes and genomes
-
Ogata H., Goto S., Sato K., Fujibuchi W., Bono H., and Kanehisa M. KEGG: Kyoto encyclopedia of genes and genomes. Nucleic Acids Res. 27 (1999) 29-34
-
(1999)
Nucleic Acids Res.
, vol.27
, pp. 29-34
-
-
Ogata, H.1
Goto, S.2
Sato, K.3
Fujibuchi, W.4
Bono, H.5
Kanehisa, M.6
-
30
-
-
0033977426
-
Hepatic fibrosis in rheumatoid arthritis patients treated with methotrexate: application of a new semi-quantitative scoring system
-
Richard S., Guerret S., Gerard F., Tebib J.G., and Vignon E. Hepatic fibrosis in rheumatoid arthritis patients treated with methotrexate: application of a new semi-quantitative scoring system. Rheumatology (Oxford) 39 (2000) 50-54
-
(2000)
Rheumatology (Oxford)
, vol.39
, pp. 50-54
-
-
Richard, S.1
Guerret, S.2
Gerard, F.3
Tebib, J.G.4
Vignon, E.5
-
31
-
-
0036502854
-
Cholesterol biosynthesis: lanosterol to cholesterol
-
Risley J.M. Cholesterol biosynthesis: lanosterol to cholesterol. J. Chem. Educ. 79 (2002) 377-384
-
(2002)
J. Chem. Educ.
, vol.79
, pp. 377-384
-
-
Risley, J.M.1
-
33
-
-
0037311919
-
TM4: a free, open-source system for microarray data management and analysis
-
Saeed A.I., Sharov V., White J., Li J., Liang W., Bhagabati N., Braisted J., Klapa M., Currier T., Thiagarajan M., Sturn A., Snuffin M., Rezantsev A., Popov D., Ryltsov A., Kostukovich E., Borisovsky I., Liu Z., Vinsavich A., Trush V., and Quackenbush J. TM4: a free, open-source system for microarray data management and analysis. Biotechniques 34 (2003) 374-378
-
(2003)
Biotechniques
, vol.34
, pp. 374-378
-
-
Saeed, A.I.1
Sharov, V.2
White, J.3
Li, J.4
Liang, W.5
Bhagabati, N.6
Braisted, J.7
Klapa, M.8
Currier, T.9
Thiagarajan, M.10
Sturn, A.11
Snuffin, M.12
Rezantsev, A.13
Popov, D.14
Ryltsov, A.15
Kostukovich, E.16
Borisovsky, I.17
Liu, Z.18
Vinsavich, A.19
Trush, V.20
Quackenbush, J.21
more..
-
34
-
-
0026551025
-
Expression of heat shock genes during differentiation of mammalian osteoblasts and promyelocytic leukemia cells
-
Shakoori A.R., Oberdorf A.M., Owen T.A., Weber L.A., Hickey E., Stein J.L., Lian J.B., and Stein G.S. Expression of heat shock genes during differentiation of mammalian osteoblasts and promyelocytic leukemia cells. J. Cell Biochem. 48 (1992) 277-287
-
(1992)
J. Cell Biochem.
, vol.48
, pp. 277-287
-
-
Shakoori, A.R.1
Oberdorf, A.M.2
Owen, T.A.3
Weber, L.A.4
Hickey, E.5
Stein, J.L.6
Lian, J.B.7
Stein, G.S.8
-
36
-
-
33745223877
-
K-means clustering: a half-century synthesis
-
Steinley D. K-means clustering: a half-century synthesis. Br. J. Math. Stat. Psychol. 59 (2006) 1-34
-
(2006)
Br. J. Math. Stat. Psychol.
, vol.59
, pp. 1-34
-
-
Steinley, D.1
-
37
-
-
33748653376
-
Methotrexate in rheumatoid arthritis
-
Swierkot J., and Szechinski J. Methotrexate in rheumatoid arthritis. Pharmacol. Rep. 58 (2006) 473-492
-
(2006)
Pharmacol. Rep.
, vol.58
, pp. 473-492
-
-
Swierkot, J.1
Szechinski, J.2
-
38
-
-
0034960264
-
Missing value estimation methods for DNA microarrays
-
Troyanskaya O., Cantor M., Sherlock G., Brown P., Hastie T., Tibshirani R., Botstein D., and Altman R.B. Missing value estimation methods for DNA microarrays. Bioinformatics 17 (2001) 520-525
-
(2001)
Bioinformatics
, vol.17
, pp. 520-525
-
-
Troyanskaya, O.1
Cantor, M.2
Sherlock, G.3
Brown, P.4
Hastie, T.5
Tibshirani, R.6
Botstein, D.7
Altman, R.B.8
-
39
-
-
0034193457
-
Role of a new mammalian gene family in the biosynthesis of very long chain fatty acids and sphingolipids
-
Tvrdik P., Westerberg R., Silve S., Asadi A., Jakobsson A., Cannon B., Loison G., and Jacobsson A. Role of a new mammalian gene family in the biosynthesis of very long chain fatty acids and sphingolipids. J. Cell Biol. 149 (2000) 707-718
-
(2000)
J. Cell Biol.
, vol.149
, pp. 707-718
-
-
Tvrdik, P.1
Westerberg, R.2
Silve, S.3
Asadi, A.4
Jakobsson, A.5
Cannon, B.6
Loison, G.7
Jacobsson, A.8
-
40
-
-
0035977845
-
Microarray analysis of hepatotoxins in vitro reveals a correlation between gene expression profiles and mechanisms of toxicity
-
Waring J.F., Ciurlionis R., Jolly R.A., Heindel M., and Ulrich R.G. Microarray analysis of hepatotoxins in vitro reveals a correlation between gene expression profiles and mechanisms of toxicity. Toxicol. Lett. 120 (2001) 359-368
-
(2001)
Toxicol. Lett.
, vol.120
, pp. 359-368
-
-
Waring, J.F.1
Ciurlionis, R.2
Jolly, R.A.3
Heindel, M.4
Ulrich, R.G.5
-
41
-
-
17944366528
-
Clustering of hepatotoxins based on mechanism of toxicity using gene expression profiles
-
Waring J.F., Jolly R.A., Ciurlionis R., Lum P.Y., Praestgaard J.T., Morfitt D.C., Buratto B., Roberts C., Schadt E., and Ulrich R.G. Clustering of hepatotoxins based on mechanism of toxicity using gene expression profiles. Toxicol. Appl. Pharmacol. 175 (2001) 28-42
-
(2001)
Toxicol. Appl. Pharmacol.
, vol.175
, pp. 28-42
-
-
Waring, J.F.1
Jolly, R.A.2
Ciurlionis, R.3
Lum, P.Y.4
Praestgaard, J.T.5
Morfitt, D.C.6
Buratto, B.7
Roberts, C.8
Schadt, E.9
Ulrich, R.G.10
-
42
-
-
33646039454
-
ELOVL3 is an important component for early onset of lipid recruitment in brown adipose tissue
-
Westerberg R., Mansson J.E., Golozoubova V., Shabalina I.G., Backlund E.C., Tvrdik P., Retterstol K., Capecchi M.R., and Jacobsson A. ELOVL3 is an important component for early onset of lipid recruitment in brown adipose tissue. J. Biol. Chem. 281 (2006) 4958-4968
-
(2006)
J. Biol. Chem.
, vol.281
, pp. 4958-4968
-
-
Westerberg, R.1
Mansson, J.E.2
Golozoubova, V.3
Shabalina, I.G.4
Backlund, E.C.5
Tvrdik, P.6
Retterstol, K.7
Capecchi, M.R.8
Jacobsson, A.9
-
43
-
-
33749624887
-
Hepatic gene expression profiling and lipid homeostasis in mice exposed to steatogenic drug, tetracycline
-
Yin H.Q., Kim M., Kim J.H., Kong G., Lee M.O., Kang K.S., Yoon B.I., Kim H.L., and Lee B.H. Hepatic gene expression profiling and lipid homeostasis in mice exposed to steatogenic drug, tetracycline. Toxicol. Sci. 94 (2006) 206-216
-
(2006)
Toxicol. Sci.
, vol.94
, pp. 206-216
-
-
Yin, H.Q.1
Kim, M.2
Kim, J.H.3
Kong, G.4
Lee, M.O.5
Kang, K.S.6
Yoon, B.I.7
Kim, H.L.8
Lee, B.H.9
-
44
-
-
34548511145
-
Differential gene expression and lipid metabolism in fatty liver induced by acute ethanol treatment in mice
-
Yin H.Q., Kim M., Kim J.H., Kong G., Kang K.S., Kim H.L., Yoon B.I., Lee M.O., and Lee B.H. Differential gene expression and lipid metabolism in fatty liver induced by acute ethanol treatment in mice. Toxicol. Appl. Pharmacol. 223 (2007) 225-233
-
(2007)
Toxicol. Appl. Pharmacol.
, vol.223
, pp. 225-233
-
-
Yin, H.Q.1
Kim, M.2
Kim, J.H.3
Kong, G.4
Kang, K.S.5
Kim, H.L.6
Yoon, B.I.7
Lee, M.O.8
Lee, B.H.9
-
45
-
-
7044230065
-
Methotrexate enhances prostaglandin D2-stimulated heat shock protein 27 induction in osteoblasts
-
Yoshida M., Niwa M., Ishisaki A., Hirade K., Ito H., Shimizu K., Kato K., and Kozawa O. Methotrexate enhances prostaglandin D2-stimulated heat shock protein 27 induction in osteoblasts. Prostaglandins Leukot. Essent. Fatty Acids 71 (2004) 351-362
-
(2004)
Prostaglandins Leukot. Essent. Fatty Acids
, vol.71
, pp. 351-362
-
-
Yoshida, M.1
Niwa, M.2
Ishisaki, A.3
Hirade, K.4
Ito, H.5
Shimizu, K.6
Kato, K.7
Kozawa, O.8
|