A comparison of the mitochondrial genomes from two families of Solifugae (Arthropoda: Chelicerata): Eremobatidae and Ammotrechidae

Gene

Volumn 417, Issue 1-2, 2008, Pages 35-42

  Masta, Susan E ^a   Klann, Anja E ^b   Podsiadlowski, Lars ^c  

^a PORTLAND STATE UNIVERSITY   (United States)

^b UNIVERSITY OF GREIFSWALD   (Germany)

^c FREIE UNIVERSITÄT BERLIN   (Germany)

Author keywords

Arachnid; Camel spiders; Gene duplication; Gene rearrangement; mtDNA; Solpugid

Indexed keywords

RIBOSOME RNA; TRANSFER RNA;

ARTHROPOD; ARTICLE; CONTROLLED STUDY; GENE DUPLICATION; GENE FUNCTION; GENE REARRANGEMENT; GENE SEQUENCE; GENETIC ORGANIZATION; GENOMICS; LIMULUS; MITOCHONDRIAL GENE; NONHUMAN; PRIORITY JOURNAL;

ANIMALS; ARACHNIDA; ARTHROPODS; GENE DUPLICATION; GENE ORDER; GENOME, MITOCHONDRIAL; MOLECULAR SEQUENCE DATA; NUCLEIC ACID CONFORMATION; RNA, RIBOSOMAL; RNA, UNTRANSLATED; SEQUENCE ALIGNMENT;

AMMOTRECHIDAE; ARACHNIDA; ARTHROPODA; CHELICERATA; MEROSTOMATA; METAZOA; SOLIFUGAE;

EID: 44449178467     PISSN: 03781119     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.gene.2008.03.011     Document Type: Article

References (44)

1. Banta B.H., and Marer P.J. An attack by a solpugid on an iguanid lizard hatchling. Br. J. Herpetol. 4 (1972) 266-267
2. Bernini F., Carnevale G., Bagnoli G., and Stouge S. An early Ordovician oribatid mite (Acari: Oribatida) from the island of Oland, Sweden. In: Bernini F., Nannelli R., Nuzzaci G., and de Lillo E. (Eds). Acarid Phylogeny and Evolution. Adaptations in Mites and Ticks (2002), Kluwer, The Hague
3. Black IV W.C., and Roehrdanz R.L. Mitochondrial gene order is not conserved in arthropods: prostriate and metastriate tick mitochondrial genomes. Mol. Biol. Evol. 15 (1998) 1772-1785
4. Boore J.L. Animal mitochondrial genomes. Nucleic Acids Res. 27 (1999) 1767-1780
5. Boore J.L. The use of genome-level characters for phylogenetic reconstruction. Trends Ecol. Evol. 21 (2006) 439-446
6. Boore J.L., and Brown W.M. Mitochondrial genomes of Galathealinum, Helobdella, and Platynereis: sequence and gene arrangement comparisons indicate that Pogonophora is not a phylum and Annelida and Arthropoda are not sister taxa. Mol. Biol. Evol. 17 (2000) 87-106
7. Boore J.L., Lavrov D.V., and Brown W.M. Gene translocation links insects and crustaceans. Nature 392 (1998) 667-668
8. Brownell P.H., and Farley R.D. The organization of the malleolar sensory system in the solpugid, Chanbria sp. Tissue Cell 6 (1974) 471-485
9. Dowton M., Castro L.R., and Austin A.D. Mitochondrial gene rearrangements as phylogenetic characters in the invertebrates: the examination of genome 'morphology'. Invertebr. Syst. 16 (2002) 345-356
10. Dunlop J.A., Anderson L.I., Kerp H., and Hass H. A harvestman (Arachnida: Opiliones) from the Early Devonian Rhynie cherts, Aberdeenshire, Scotland. Trans. R. Soc. Edinb. Earth Sci. 94 (2004) 341-354
11. Fahrein K., Talarico G., Braband A., and Podsiadlowski L. The complete mitochondrial genome of Pseudocellus pearsei (Chelicerata: Ricinulei) and a comparison of mitochondrial gene rearrangements in Arachnida. BMC Genomics 8 (2007)
12. Giribet G., Edgecombe G.D., Wheeler W.C., and Babbitt C. Phylogeny and systematic position of Opiliones: a combined analysis of chelicerate relationships using morphological and molecular data. Cladistics 18 (2002) 5-70
13. Hall T.A. BioEdit: a user-friendly biological sequence alignment editor ad analysis program for Windows 95/98/NT. Nucleic Acids Symp. Ser. 41 (1999) 95-98
14. Harvey M.S. The neglected cousins: what do we know about the smaller arachnid orders?. J. Archnol. (2002)
15. Harvey M.S. Catalogue of the Smaller Arachnid Orders of the World: Amblypygi (2003), CSIRO Publishing, Uropygi
16. Hassanin A. Phylogeny of Arthropoda inferred from mitochondrial sequences: strategies for limiting the misleading effects of multiple changes in pattern and rates of substitution. Mol. Phylogenet. Evol. 38 (2006) 100-116
17. Lavrov D.V., Boore J.L., and Brown W.M. The complete mitochondrial DNA sequence of the horseshoe crab Limulus polyphemus. Mol. Biol. Evol. 17 (2000) 813-824
18. Lavrov D.V., Boore J.L., and Brown W.M. Complete mtDNA sequences of two millipedes suggest a new model for mitochondrial gene rearrangements: duplication and nonrandom loss. Mol. Biol. Evol. 19 (2002) 163-169
19. Lavrov D.V., Brown W.M., and Boore J.L. Phylogenetic position of the Pentastomida and (pan)crustacean relationships. Proc. R. Soc. Lond., B. 271 (2004) 537-544
20. Lowe T.M., and Eddy S.R. tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence. Nucleic Acids Res. 25 (1997) 955-964
21. Macey J.R., Larson A., Ananjeva N.B., Fang Z., and Papenfuss T.J. Two novel gene orders and the role of light-strand replication in rearrangement of the vertebrate mitochondrial genome. Mol. Biol. Evol. 14 (1997) 91-104
22. Maddison D.R., and Maddison W.P. MacClade 4: Analysis of Phylogeny and Character Evolution (2000), Sinauer Associates, Inc., Sunderland, Massachusetts, USA
23. Masta S.E., and Boore J.L. Parallel evolution of truncated transfer RNA genes in arachnid mitochondrial genomes. Mol Biol Evol. 25 (2008) 949-959 10.1093/molbev/msn051
24. Moritz C., and Brown W.M. Tandem duplication of D-loop and ribosomal RNA sequences in lizard mitochondrial DNA. Science 233 (1986) 1425-1427
25. Moritz C., Dowling T.E., and Brown W.M. Evolution of animal mitochondrial DNA: relevance for population biology and systematics. Annu. Rev. Ecol. Syst. 18 (1987) 269-292
26. Mueller R.L., and Boore J.L. Molecular mechanisms of extensive mitochondrial gene rearrangements in plethodontid salamanders. Mol. Biol. Evol. 22 (2005) 2104-2112
27. Ojala D., Montoya J., and Attardi G. tRNA punctuation model of RNA processing in human mitochondria. Nature 290 (1981) 470-474
28. Petrunkevitch A. A monograph of the terrestrial Palaeozoic Arachnida of North America. Trans. Conn. Acad. Arts Sci. 18 (1913) 1-137
29. Poinar G., and Santiago-Blay J.A. A fossil solpugid, Haplodontus proterus, new genus, new species (Arachnida: Solpugida) from Dominican amber. J. N. Y. Entomol. Soc. 97 (1989) 125-132
30. Qiu Y., Song D., Zhou K., and Sun H. The mitochondrial sequences of Heptethela hangzhouensis and Ornithoctonus huwena reveal unique gene arrangements and atypical tRNAs. J. Mol. Evol. 60 (2005) 57-71
31. Reyes A., Gissi C., Pesole G., and Saccone C. Asymmetrical directional mutation pressure in the mitochondrial genome of mammals. Mol. Biol. Evol. 15 (1998) 957-966
32. Roewer C.F. Solifugae, Palpigradi. In Klassen und Ordnungen des Tierreichs. In: Bronns H.G. (Ed). 5: Arthropoda. IV: Arachnoidea. Vol. 5(IV)(4)(4-5): 481-723. Akademische Verlagsgesellschaft M.B.H.: Leipzig (1934)
33. Sambrook J., and Russell D.W. Molecular Cloning: A Laboratory Manual. Third ed. (2001), Cold Springs Harbor Laboratory Press
34. Shultz J.W. Evolutionary morphology and phylogeny of arachnida. Cladistics 6 (1990) 1-38
35. Shultz J.W. A phylogenetic analysis of the arachnid orders based on morphological characters. Zool. J. Linn. Soc. 150 (2007) 221-265
36. Swofford D.L. PAUP*. Phylogenetic Analysis Using Parsimony (*and Other Methods). Version 4 (2000), Sinauer Associates, Sunderland, Massachusetts
37. van der Hammen L. An Introduction to Comparative Arachnology (1989), SPB Acad. Publ., The Hague
38. Weygoldt P., and Paulus H.F. Unteruschungen zur morphologie, taxonomie und phylogenie der Chelicerata. II. Cladogramme und die enfaltung der Chelicerata. Z. Zool. Syst. Evol. 17 (1979) 117-200
39. Wharton R.A. Biology of the diurnal Metasolpuga-Picta (Kraepelin) (Solifugae, Solpugidae) compared with that of nocturnal species. J. Arachnol. 14 (1986) 363-383
40. Wheeler W.C., and Hayashi C.Y. The phylogeny of the extant chelicerate orders. Cladistics 14 (1998) 173-192
41. Wolstenholme D.R. Animal mitochondrial DNA: structure and evolution. In: Wolstenholme D.R., and Jeon K.W. (Eds). Mitochondrial genomes (1992), Academic Press, New York 173-216
42. Yamauchi M.M., Miya M.U., Machida R.J., and Nishida M. PCR-based approach for sequencing mitochondrial genomes of decapod crustaceans, with a practical example from Kuruma prawn (Marsupenaeus japonicus). Mar. Biotechnol. 6 (2004) 419-429
43. Yokobori S.-i., Fukuda N., Nakamura M., Aoyama T., and Oshima T. Long-term conservation of six duplicated structural genes in cephalopod mitochondrial genomes. Mol. Biol. Evol. 21 (2004) 2034-2046
44. Zhang D.-X., Szymura J.M., and Hewitt G.M. Evolution and structural conservation of the control region of insect mitochondrial DNA. J. Mol. Evol. 40 (1995) 382-391