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Volumn 9, Issue SUPPL. 1, 2008, Pages

HMMEditor: A visual editing tool for profile hidden Markov model

Author keywords

[No Author keywords available]

Indexed keywords

DNA; RNA;

EID: 44449173642     PISSN: None     EISSN: 14712164     Source Type: Journal    
DOI: 10.1186/1471-2164-9-S1-S8     Document Type: Article
Times cited : (19)

References (16)
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    • (1994) Journal of Molecular Biology , vol.235 , pp. 1501-1531
    • Krogh, A.1    Brown, M.2    Mais, I.S.3    Sjölander, K.4    Haussler, D.5
  • 2
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    • Hidden Markov models of biological primary sequence information
    • 10.1073/pnas.91.3.1059
    • Baldi P. Chauvin Y. Hunkapiller T. McClure M. A. Hidden Markov models of biological primary sequence information Proc Natl Acad Sci U S A 1994, 91:1059-1063. 10.1073/pnas.91.3.1059 8302831 521453
    • (1994) Proc Natl Acad Sci U S A , vol.91 , pp. 1059-1063
    • Baldi, P.1    Chauvin, Y.2    Hunkapiller, T.3    McClure, M.A.4
  • 3
    • 0032438987 scopus 로고    scopus 로고
    • Hidden Markov models for detecting remote protein homologies
    • 10.1093/bioinformatics/14.10.846 9927713
    • Karplus K. Burrett C. Hughey R. Hidden Markov models for detecting remote protein homologies Bioinformatics 1998, 14:846-856. 10.1093/ bioinformatics/14.10.846 9927713
    • (1998) Bioinformatics , vol.14 , pp. 846-856
    • Karplus, K.1    Burrett, C.2    Hughey, R.3
  • 4
    • 0031743421 scopus 로고    scopus 로고
    • Profile hidden Markov models
    • 10.1093/bioinformatics/14.9.755 9918945
    • Eddy S. R. Profile hidden Markov models Bioinformatics 1998, 14:755-763. 10.1093/bioinformatics/14.9.755 9918945
    • (1998) Bioinformatics , vol.14 , pp. 755-763
    • Eddy, S.R.1
  • 5
    • 0024557590 scopus 로고
    • Stochastic models for heterogeneous DNA sequence
    • 2706403
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    • (1989) Bull. Math. Biol. , vol.51 , pp. 79-94
    • Churchill, G.A.1
  • 7
    • 0031586003 scopus 로고    scopus 로고
    • Prediction of complete gene structures in human genomic DNA
    • 10.1006/jmbi.1997.0951 9149143
    • Burge C. Karlin S. Prediction of complete gene structures in human genomic DNA J. Mol. Biol. 1997, 268:78-94. 10.1006/jmbi.1997.0951 9149143
    • (1997) J. Mol. Biol. , vol.268 , pp. 78-94
    • Burge, C.1    Karlin, S.2
  • 8
    • 2942544229 scopus 로고    scopus 로고
    • COACH: Profile-profile alignment of protein families using hidden Markov models
    • 10.1093/bioinformatics/bth091 14962937
    • Edgar R. C. Sjölander K. COACH: Profile-profile alignment of protein families using hidden Markov models Bioinformatics 2004, 20:1309-1318. 10.1093/bioinformatics/bth091 14962937
    • (2004) Bioinformatics , vol.20 , pp. 1309-1318
    • Edgar, R.C.1    Sjölander, K.2
  • 9
    • 16344373015 scopus 로고    scopus 로고
    • Protein homology detection by HMM-HMM comparison
    • 10.1093/bioinformatics/bti125 15531603
    • Söding J. Protein homology detection by HMM-HMM comparison Bioinformatics 2005, 21:951-960. 10.1093/bioinformatics/bti125 15531603
    • (2005) Bioinformatics , vol.21 , pp. 951-960
    • Söding, J.1
  • 11
    • 2442525077 scopus 로고    scopus 로고
    • HMM Logos for visualization of protein families
    • 341448 14736340 10.1186/1471-2105-5-7
    • Schuster-Böckler B. Schultz J. Rahmann S. HMM Logos for visualization of protein families BMC Bioinformatics 2004, 5:7. 341448 14736340 10.1186/1471-2105-5-7
    • (2004) BMC Bioinformatics , vol.5 , pp. 7
    • Schuster-Böckler, B.1    Schultz, J.2    Rahmann, S.3
  • 12
    • 0025008168 scopus 로고
    • Sequence Logos: A new way to display consensus sequences
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    • Schneider T. D. Stephens R. M. Sequence Logos: A new way to display consensus sequences Nucleic Acids Res 1990, 18:6097-6100. 332411 2172928 10.1093/nar/18.20.6097
    • (1990) Nucleic Acids Res , vol.18 , pp. 6097-6100
    • Schneider, T.D.1    Stephens, R.M.2
  • 15
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    • CLUSTALW: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
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    • Higgins D. Thompson J. Gibson T. Thompson D. J. Higgins D. G. Gibson T. J. CLUSTALW: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice Nucleic Acids Res 1994, 22:4673-4680. 308517 7984417 10.1093/nar/22.22.4673
    • (1994) Nucleic Acids Res , vol.22 , pp. 4673-4680
    • Higgins, D.1    Thompson, J.2    Gibson, T.3    Thompson, D.J.4    Higgins, D.G.5    Gibson, T.J.6
  • 16
    • 45149112780 scopus 로고    scopus 로고
    • HMMEditor
    • HMMEditor http://babbage.cs.missouri.edu/~chengji/cheng_software.html


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.