메뉴 건너뛰기




Volumn 41, Issue 4, 2008, Pages 295-304

Intrinsic bent DNA sites in the chromosomal replication origin of Xylella fastidiosa 9a5c

Author keywords

Intrinsic bent DNA; oriC; Prokaryotic replication origin; Xylella fastidiosa

Indexed keywords

BACTERIAL DNA; BACTERIAL PROTEIN; CURVED DNA; PROTEIN DNAN; PROTEIN ORIC; PROTEIN RPMH; REPLICATION INITIATOR PROTEIN DNAA;

EID: 44449154243     PISSN: 0100879X     EISSN: 1414431X     Source Type: Journal    
DOI: 10.1590/S0100-879X2008000400007     Document Type: Article
Times cited : (2)

References (40)
  • 1
    • 0038497542 scopus 로고
    • Molecular structure of nucleic acids; a structure for deoxyribose nucleic acid
    • Watson JD, Crick FH. Molecular structure of nucleic acids; a structure for deoxyribose nucleic acid. Nature 1953; 171: 737-738.
    • (1953) Nature , vol.171 , pp. 737-738
    • Watson, J.D.1    Crick, F.H.2
  • 4
    • 0028624664 scopus 로고
    • Bending and curvature calculations in B-DNA
    • Goodsell DS, Dickerson RE. Bending and curvature calculations in B-DNA. Nucleic Acids Res 1994; 22: 5497-5503.
    • (1994) Nucleic Acids Res , vol.22 , pp. 5497-5503
    • Goodsell, D.S.1    Dickerson, R.E.2
  • 5
    • 0024296534 scopus 로고
    • Point mutation in the polyomavirus enhancer alters local DNA conformation
    • Fujimura FK. Point mutation in the polyomavirus enhancer alters local DNA conformation. Nucleic Acids Res 1988; 16: 1987-1997.
    • (1988) Nucleic Acids Res , vol.16 , pp. 1987-1997
    • Fujimura, F.K.1
  • 7
    • 0034851773 scopus 로고    scopus 로고
    • Mapping of intrinsic bent DNA sites in the upstream region of DNA puff BhC4-1 amplified gene
    • Fiorini A, Basso LR Jr, Paco-Larson ML, Fernandez MA. Mapping of intrinsic bent DNA sites in the upstream region of DNA puff BhC4-1 amplified gene. J Cell Biochem 2001; 83: 1-13.
    • (2001) J Cell Biochem , vol.83 , pp. 1-13
    • Fiorini, A.1    Basso Jr, L.R.2    Paco-Larson, M.L.3    Fernandez, M.A.4
  • 9
    • 33749259810 scopus 로고    scopus 로고
    • An unusual extended DNA loop attachment region is located in the human dystrophin gene
    • Iarovaia OV, Borounova V, Vassetzky YS, Razin SV. An unusual extended DNA loop attachment region is located in the human dystrophin gene. J Cell Physiol 2006; 209: 515-521.
    • (2006) J Cell Physiol , vol.209 , pp. 515-521
    • Iarovaia, O.V.1    Borounova, V.2    Vassetzky, Y.S.3    Razin, S.V.4
  • 10
    • 0031870490 scopus 로고    scopus 로고
    • Direct cloning and analysis of DNA sequences from a region of the Chinese hamster genome associated with aphidicolin-sensitive fragility
    • Palin AH, Critcher R, Fitzgerald DJ, Anderson JN, Farr CJ. Direct cloning and analysis of DNA sequences from a region of the Chinese hamster genome associated with aphidicolin-sensitive fragility. J Cell Sci 1998; 111 (Part 12): 1623-104.
    • (1998) J Cell Sci , vol.111 , Issue.PART 12 , pp. 1623-2104
    • Palin, A.H.1    Critcher, R.2    Fitzgerald, D.J.3    Anderson, J.N.4    Farr, C.J.5
  • 11
    • 0027445884 scopus 로고
    • Long-range organization and sequence-directed curvature of Xenopus laevis satellite 1 DNA
    • Pasero P, Sjakste N, Blettry C, Got C, Marilley M. Long-range organization and sequence-directed curvature of Xenopus laevis satellite 1 DNA. Nucleic Acids Res 1993; 21: 4703-4710.
    • (1993) Nucleic Acids Res , vol.21 , pp. 4703-4710
    • Pasero, P.1    Sjakste, N.2    Blettry, C.3    Got, C.4    Marilley, M.5
  • 12
    • 2942628210 scopus 로고    scopus 로고
    • Defined sequence modules and an architectural element cooperate to promote initiation at an ectopic mammalian chromosomal replication origin
    • Altman AL, Fanning E. Defined sequence modules and an architectural element cooperate to promote initiation at an ectopic mammalian chromosomal replication origin. Mol Cell Biol 2004; 24: 4138-4150.
    • (2004) Mol Cell Biol , vol.24 , pp. 4138-4150
    • Altman, A.L.1    Fanning, E.2
  • 13
  • 14
    • 33744530331 scopus 로고    scopus 로고
    • Scaffold/Matrix Attachment regions and intrinsic DNA curvature
    • Fiorini A, Gouveia FS, Fernandez MA. Scaffold/Matrix Attachment regions and intrinsic DNA curvature. Biochemistry 2006; 71: 481-488.
    • (2006) Biochemistry , vol.71 , pp. 481-488
    • Fiorini, A.1    Gouveia, F.S.2    Fernandez, M.A.3
  • 16
    • 0034705420 scopus 로고    scopus 로고
    • Bacterial mode of replication with eukaryotic-like machinery in a hyperthermophilic archaeon
    • Myllykallio H, Lopez P, Lopez-Garcia P, Heilig R, Saurin W, Zivanovic Y, et al. Bacterial mode of replication with eukaryotic-like machinery in a hyperthermophilic archaeon. Science 2000; 288: 2212-2215.
    • (2000) Science , vol.288 , pp. 2212-2215
    • Myllykallio, H.1    Lopez, P.2    Lopez-Garcia, P.3    Heilig, R.4    Saurin, W.5    Zivanovic, Y.6
  • 17
    • 17044410835 scopus 로고    scopus 로고
    • Eukaryotic origins of DNA replication: Could you please be more specific?
    • Cvetic C, Walter JC. Eukaryotic origins of DNA replication: could you please be more specific? Semin Cell Dev Biol 2005; 16: 343-353.
    • (2005) Semin Cell Dev Biol , vol.16 , pp. 343-353
    • Cvetic, C.1    Walter, J.C.2
  • 18
    • 0023665948 scopus 로고
    • Computer modelling of DNA structures involved in chromosome maintenance
    • Eckdahl TT, Anderson JN. Computer modelling of DNA structures involved in chromosome maintenance. Nucleic Acids Res 1987; 15: 8531-8545.
    • (1987) Nucleic Acids Res , vol.15 , pp. 8531-8545
    • Eckdahl, T.T.1    Anderson, J.N.2
  • 19
    • 0027321646 scopus 로고
    • Culture and serological detection of the xylem-limited bacterium causing citrus variegated chlorosis and its identification as a strain of Xylella fastidiosa
    • Chang CJ, Garnier M, Zreik L, Rossetti V, Bové JM. Culture and serological detection of the xylem-limited bacterium causing citrus variegated chlorosis and its identification as a strain of Xylella fastidiosa. Curr Microbiol 1993; 27: 137-142.
    • (1993) Curr Microbiol , vol.27 , pp. 137-142
    • Chang, C.J.1    Garnier, M.2    Zreik, L.3    Rossetti, V.4    Bové, J.M.5
  • 20
    • 0034644159 scopus 로고    scopus 로고
    • The genome sequence of the plant pathogen Xylella fastidiosa. The Xylella fastidiosa Consortium of the Organization for Nucleotide Sequencing and Analysis
    • Simpson AJ, Reinach FC, Arruda P, Abreu FA, Acencio M, Alvarenga R, et al. The genome sequence of the plant pathogen Xylella fastidiosa. The Xylella fastidiosa Consortium of the Organization for Nucleotide Sequencing and Analysis. Nature 2000; 406: 151-159.
    • (2000) Nature , vol.406 , pp. 151-159
    • Simpson, A.J.1    Reinach, F.C.2    Arruda, P.3    Abreu, F.A.4    Acencio, M.5    Alvarenga, R.6
  • 22
    • 0026591035 scopus 로고
    • Genes and their organization in the replication origin region of the bacterial chromosome
    • Ogasawara N, Yoshikawa H. Genes and their organization in the replication origin region of the bacterial chromosome. Mol Microbiol 1992; 6: 629-634.
    • (1992) Mol Microbiol , vol.6 , pp. 629-634
    • Ogasawara, N.1    Yoshikawa, H.2
  • 24
    • 0024657748 scopus 로고
    • The CTAB-DNA precipitation method: A common mini-scale preparation of template DNA from phagemids, phages or plasmids suitable for sequencing
    • Del Sal G, Manfioletti G, Schneider C. The CTAB-DNA precipitation method: a common mini-scale preparation of template DNA from phagemids, phages or plasmids suitable for sequencing. Biotechniques 1989; 7: 514-520.
    • (1989) Biotechniques , vol.7 , pp. 514-520
    • Del Sal, G.1    Manfioletti, G.2    Schneider, C.3
  • 25
    • 0022359711 scopus 로고
    • On the sequence determinants and flexibility of the kinetoplast DNA fragment with abnormal gel electrophoretic mobilities
    • Diekmann S, Wang JC. On the sequence determinants and flexibility of the kinetoplast DNA fragment with abnormal gel electrophoretic mobilities. J Mol Biol 1985; 186: 1-11.
    • (1985) J Mol Biol , vol.186 , pp. 1-11
    • Diekmann, S.1    Wang, J.C.2
  • 26
    • 0027103633 scopus 로고
    • Chromosomal illegitimate recombination in mammalian cells is associated with intrinsically bent DNA elements
    • Milot E, Belmaaza A, Wallenburg JC, Gusew N, Bradley WE, Chartrand P. Chromosomal illegitimate recombination in mammalian cells is associated with intrinsically bent DNA elements. EMBO J 1992; 11: 5063-5070.
    • (1992) EMBO J , vol.11 , pp. 5063-5070
    • Milot, E.1    Belmaaza, A.2    Wallenburg, J.C.3    Gusew, N.4    Bradley, W.E.5    Chartrand, P.6
  • 28
    • 0029001619 scopus 로고
    • Promoter structure and intron-exon organization of a scorpion alphatoxin gene
    • Delabre ML, Pasero P, Marilley M, Bougis PE. Promoter structure and intron-exon organization of a scorpion alphatoxin gene. Biochemistry 1995; 34: 6729-6736.
    • (1995) Biochemistry , vol.34 , pp. 6729-6736
    • Delabre, M.L.1    Pasero, P.2    Marilley, M.3    Bougis, P.E.4
  • 29
    • 0029900290 scopus 로고    scopus 로고
    • Common DNA structural features exhibited by eukaryotic ribosomal gene promoters
    • Marilley M, Pasero P. Common DNA structural features exhibited by eukaryotic ribosomal gene promoters. Nucleic Acids Res 1996; 24: 2204-2211.
    • (1996) Nucleic Acids Res , vol.24 , pp. 2204-2211
    • Marilley, M.1    Pasero, P.2
  • 31
    • 33746860263 scopus 로고    scopus 로고
    • Structural basis for ATP-dependent DnaA assembly and replication-origin remodeling
    • Erzberger JP, Mott ML, Berger JM. Structural basis for ATP-dependent DnaA assembly and replication-origin remodeling. Nat Struct Mol Biol 2006; 13: 676-683.
    • (2006) Nat Struct Mol Biol , vol.13 , pp. 676-683
    • Erzberger, J.P.1    Mott, M.L.2    Berger, J.M.3
  • 32
    • 23644448872 scopus 로고    scopus 로고
    • Origins of DNA replication in the three domains of life
    • Robinson NP, Bell SD. Origins of DNA replication in the three domains of life. FEBS J 2005; 272: 3757-3766.
    • (2005) FEBS J , vol.272 , pp. 3757-3766
    • Robinson, N.P.1    Bell, S.D.2
  • 33
    • 44449144260 scopus 로고    scopus 로고
    • DoriC: a database of oriC region in bacterial genomes. http://tubic.tju.edu.cn/doriC/. Accessed August 21, 2007.
    • DoriC: a database of oriC region in bacterial genomes. http://tubic.tju.edu.cn/doriC/. Accessed August 21, 2007.
  • 34
    • 0023047191 scopus 로고
    • Detection, sequence patterns and function of unusual DNA structures
    • Anderson JN. Detection, sequence patterns and function of unusual DNA structures. Nucleic Acids Res 1986; 14: 8513-8533.
    • (1986) Nucleic Acids Res , vol.14 , pp. 8513-8533
    • Anderson, J.N.1
  • 35
    • 0026062650 scopus 로고
    • Species-specific patterns of DNA bending and sequence
    • VanWye JD, Bronson EC, Anderson JN. Species-specific patterns of DNA bending and sequence. Nucleic Acids Res 1991; 19: 5253-5261.
    • (1991) Nucleic Acids Res , vol.19 , pp. 5253-5261
    • VanWye, J.D.1    Bronson, E.C.2    Anderson, J.N.3
  • 36
    • 0034666422 scopus 로고    scopus 로고
    • Modeling of DNA local parameters predicts encrypted architectural motifs in Xenopus laevis ribosomal gene promoter
    • Roux-Rouquie M, Marilley M. Modeling of DNA local parameters predicts encrypted architectural motifs in Xenopus laevis ribosomal gene promoter. Nucleic Acids Res 2000; 28: 3433-3441.
    • (2000) Nucleic Acids Res , vol.28 , pp. 3433-3441
    • Roux-Rouquie, M.1    Marilley, M.2
  • 37
    • 3042513379 scopus 로고    scopus 로고
    • Replication fork and SeqA focus distributions in Escherichia coli suggest a replication hyperstructure dependent an nucleotide metabolism
    • Molina F, Skarstad K, Replication fork and SeqA focus distributions in Escherichia coli suggest a replication hyperstructure dependent an nucleotide metabolism. Mol Microbiol 2004; 52: 1597-1612.
    • (2004) Mol Microbiol , vol.52 , pp. 1597-1612
    • Molina, F.1    Skarstad, K.2
  • 38
    • 4744340583 scopus 로고    scopus 로고
    • Positive supercoiling is generated in the presence of Escherichia coli SeqA protein
    • Klungsoyr HK, Skarstad K. Positive supercoiling is generated in the presence of Escherichia coli SeqA protein. Mol Microbiol 2004; 54: 123-131.
    • (2004) Mol Microbiol , vol.54 , pp. 123-131
    • Klungsoyr, H.K.1    Skarstad, K.2
  • 39
    • 0037636102 scopus 로고    scopus 로고
    • Analysis of the intrinsic bend in the M13 origin of replication by atomic force microscopy
    • Lu Y, Weers BD, Stellwagen NC, Analysis of the intrinsic bend in the M13 origin of replication by atomic force microscopy. Biophys J 2003; 85: 409-415.
    • (2003) Biophys J , vol.85 , pp. 409-415
    • Lu, Y.1    Weers, B.D.2    Stellwagen, N.C.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.