Fish specific duplication of Dmrt2: Characterization of zebrafish Dmrt2b

Biochimie

Volumn 90, Issue 6, 2008, Pages 878-887

  Zhou, Xiang ^a   Li, Qin ^a   Lu, Heng ^a   Chen, Hao ^a   Guo, Yiqing ^a   Cheng, Hanhua ^a   Zhou, Rongjia ^a  

^a Center for Cell Signaling Network   (China)

Author keywords

Branchial arches; Doublesex; Functional diploidization; Genome duplication

Indexed keywords

ANIMAL TISSUE; ARTICLE; BRANCHIAL ARCH; DMRT2B GENE; DNA BINDING; DNA SEQUENCE; EMBRYO DEVELOPMENT; GENE; GENE DUPLICATION; GENE EXPRESSION; GENE FUNCTION; GENE STRUCTURE; HATCHING; MOLECULAR CLONING; NONHUMAN; NUCLEOTIDE SEQUENCE; SYNTENY; TELEOST; VERTEBRATE; ZEBRA FISH;

AMINO ACID SEQUENCE; ANIMALS; BINDING SITES; CAENORHABDITIS ELEGANS PROTEINS; DNA; DNA-BINDING PROTEINS; DROSOPHILA PROTEINS; GENE DUPLICATION; GENE EXPRESSION REGULATION, DEVELOPMENTAL; GENOME; MOLECULAR SEQUENCE DATA; SEQUENCE HOMOLOGY, AMINO ACID; SYNTENY; TRANSCRIPTION FACTORS; ZEBRAFISH; ZEBRAFISH PROTEINS;

ACTINOPTERYGII; CAENORHABDITIS ELEGANS; DANIO RERIO; OSTEICHTHYES; PISCES; TELEOSTEI; VERTEBRATA;

EID: 44449128471     PISSN: 03009084     EISSN: 61831638     Source Type: Journal    
DOI: 10.1016/j.biochi.2008.02.021     Document Type: Article

References (37)

1. Raymond C.S., Shamu C.E., Shen M.M., Seifert K.J., Hirsch B., Hodgkin J., and Zarkower D. Evidence for evolutionary conservation of sex-determining genes. Nature 391 (1998) 691-695
2. Hodgkin J. The remarkable ubiquity of DM domain factors as regulators of sexual phenotype: ancestry or aptitude?. Genes Dev. 16 (2002) 2322-2326
3. Lints R., and Emmons S.W. Regulation of sex-specific differentiation and mating behavior in C. elegans by a new member of the DM domain transcription factor family. Genes Dev. 16 (2002) 2390-2402
4. Kondo M., Froschauer A., Kitano A., Nanda I., Hornung U., Volff J.N., Asakawa S., Mitani H., Naruse K., Tanaka M., Schmid M., Shimizu N., Schartl M., and Shima A. Molecular cloning and characterization of DMRT genes from the medaka Oryzias latipes and the platyfish Xiphophorus maculatus. Gene 295 (2002) 213-222
5. Volff J.N., Zarkower D., Bardwell V.J., and Schartl M. Evolutionary dynamics of the DM domain gene family in metazoans. J. Mol. Evol. 57 1 (2003) 241-249
6. Brunner B., Hornung U., Shan Z., Nanda I., Kondo M., Zend-Ajusch E., Haaf T., Ropers H.H., Shima A., Schmid M., Kalscheuer V.M., and Schartl M. Genomic organization and expression of the doublesex-related gene cluster in vertebrates and detection of putative regulatory regions for DMRT1. Genomics 77 (2001) 8-17
7. Ottolenghi C., Fellous M., Barbieri M., and McElreavey K. Novel paralogy relations among human chromosomes support a link between the phylogeny of doublesex-related genes and the evolution of sex determination. Genomics 79 (2002) 333-343
8. Kim S., Kettlewell J.R., Anderson R.C., Bardwell V.J., and Zarkower D. Sexually dimorphic expression of multiple doublesex-related genes in the embryonic mouse gonad. Gene Expr. Patterns 3 (2003) 77-82
9. Raymond C.S., Kettlewell J.R., Hirsch B., Bardwell V.J., and Zarkower D. Expression of Dmrt1 in the genital ridge of mouse and chicken embryos suggests a role in vertebrate sexual development. Dev. Biol. 215 (1999) 208-220
10. Raymond C.S., Murphy M.W., O'Sullivan M.G., Bardwell V.J., and Zarkower D. Dmrt1, a gene related to worm and fly sexual regulators, is required for mammalian testis differentiation. Genes Dev. 14 (2000) 2587-2595
11. Kettlewell J.R., Raymond C.S., and Zarkower D. Temperature-dependent expression of turtle Dmrt1 prior to sexual differentiation. Genesis 26 (2000) 174-178
12. Nanda I., Shan Z., Schartl M., Burt D.W., Koehler M., Nothwang H., Grutzner F., Paton I.R., Windsor D., Dunn I., Engel W., Staeheli P., Mizuno S., Haaf T., and Schmid M. 300 million years of conserved synteny between chicken Z and human chromosome 9. Nat. Genet. 21 (1999) 258-259
13. Nanda I., Zend-Ajusch E., Shan Z., Grutzner F., Schartl M., Burt D.W., Koehler M., Fowler V.M., Goodwin G., Schneider W.J., Mizuno S., Dechant G., Haaf T., and Schmid M. Conserved synteny between the chicken Z sex chromosome and human chromosome 9 includes the male regulatory gene DMRT1: a comparative (re)view on avian sex determination. Cytogenet. Cell. Genet. 89 (2000) 67-78
14. Shan Z., Nanda I., Wang Y., Schmid M., Vortkamp A., and Haaf T. Sex-specific expression of an evolutionarily conserved male regulatory gene, DMRT1, in birds. Cytogenet. Cell. Genet. 89 (2000) 252-257
15. Smith C.A., McClive P.J., Western P.S., Reed K.J., and Sinclair A.H. Conservation of a sex-determining gene. Nature 402 (1999) 601-602
16. Matsuda M., Nagahama Y., Shinomiya A., Sato T., Matsuda C., Kobayashi T., Morrey C.E., Shibata N., Asakawa S., Shimizu N., Hori H., Hamaguchi S., and Sakaizumi M. DMY is a Y-specific DM-domain gene required for male development in the medaka fish. Nature 417 (2002) 559-563
17. Nanda I., Kondo M., Hornung U., Asakawa S., Winkler C., Shimizu A., Shan Z., Haaf T., Shimizu N., Shima A., Schmid M., and Schartl M. A duplicated copy of DMRT1 in the sex-determining region of the Y chromosome of the medaka, Oryzias latipes. Proc. Natl. Acad. Sci. USA 99 (2002) 11,778-11,783
18. Smith C.A., Hurley T.M., McClive P.J., and Sinclair A.H. Restricted expression of DMRT3 in chicken and mouse embryos. Gene Expr. Patterns 2 (2002) 69-72
19. Huang X., Hong C.S., O'Donnell M., and Saint-Jeannet J.P. The doublesex-related gene, XDmrt4, is required for neurogenesis in the olfactory system. Proc. Natl. Acad. Sci. USA 102 (2005) 11,349-11,354
20. Huang X., Cheng H., Guo Y., Liu L., Gui J., and Zhou R. A conserved family of doublesex-related genes from fishes. J. Exp. Zool. 294 (2002) 63-67
21. Guo Y., Gao S., Cheng H., and Zhou R. Phylogenetic tree and synteny of DMRT genes family of vertebrates. Acta Genetica Sinica 31 (2004) 1103-1108
22. Meng A., Moore B., Tang H., Yuan B., and Lin S. A Drosophila doublesex-related gene, terra, is involved in somitogenesis in vertebrates. Development 126 (1999) 1259-1268
23. Saude L., Lourenco R., Goncalves A., and Palmeirim I. Terra is a left-right asymmetry gene required for left-right synchronization of the segmentation clock. Nat. Cell Biol. 7 (2005) 918-920
24. Guo Y., Cheng H., Huang X., Gao S., Yu H., and Zhou R. Gene structure, multiple alternative splicing, and expression in gonads of zebrafish Dmrt1. Biochem. Biophys. Res. Commun. 330 (2005) 950-957
25. Guo Y., Li Q., Gao S., Zhou X., He Y., Shang X., Cheng H., and Zhou R. Molecular cloning, characterization and expression in brain and gonad of Dmrt5 of zebrafish. Biochem. Biophys. Res. Commun. 324 (2004) 569-575
26. Westerfield M. The Zebrafish Book (1995), University of Oregon Press, Eugene
27. Narendra U., Zhu L., Li B., Wilken J., and Weiss M.A. Sex-specific gene regulation. The Doublesex DM motif is a bipartite DNA-binding domain. J. Biol. Chem. 277 (2002) 43463-43473
28. Yi W., and Zarkower D. Similarity of DNA binding and transcriptional regulation by Caenorhabditis elegans MAB-3 and Drosophila melanogaster DSX suggests conservation of sex determining mechanisms. Development 126 (1999) 873-881
29. Burtis K.C., Coschigano K.T., Baker B.S., and Wensink P.C. The doublesex proteins of Drosophila melanogaster bind directly to a sex-specific yolk protein gene enhancer. EMBO J. 10 (1991) 2577-2582
30. Erdman S.E., and Burtis K.C. The drosophila doublesex proteins share a novel zinc finger related DNA binding domain. EMBO J. 12 (1993) 527-535
31. Zhu L., Wilken J., Phillips N.B., Narendra U., Chan G., Stratton S.M., Kent S.B., and Weiss M.A. Sexual dimorphism in diverse metazoans is regulated by a novel class of intertwined zinc fingers. Genes Dev. 14 (2000) 1750-1764
32. Murphy M.W., Zarkower D., and Bardwell V.J. Vertebrate DM domain proteins bind similar DNA sequences and can heterodimerize on DNA. BMC Mol. Biol. 8 (2007) 58
33. Christoffels A., Koh E.G., Chia J.M., Brenner S., Aparicio S., and Venkatesh B. Fugu genome analysis provides evidence for a whole-genome duplication early during the evolution of ray-finned fishes. Mol. Biol. Evol. 21 (2004) 1146-1151
34. Smith M.M., and Hall B.K. Development and evolutionary origins of vertebrate skeletogenic and odontogenic tissues. Biol. Rev. Camb. Philos. Soc. 65 (1990) 277-373
35. Postlethwait J., Amores A., Cresko W., Singer A., and Yan Y.L. Subfunction partitioning, the teleost radiation and the annotation of the human genome. Trends Genet. 20 (2004) 481-490
36. Shima A., Himmelbauer H., Mitani H., Furutani-Seiki M., Wittbrodt J., and Schartl M. Fish genomes flying. Symposium on Medaka Genomics. EMBO Rep. 4 (2003) 121-125
37. Steinke D., Salzburger W., and Meyer A. Novel relationships among ten fish model species revealed based on a phylogenomic analysis using ESTs. J. Mol. Evol. 62 (2006) 772-784