Triple helix formation with Drosophila satellite repeats. Unexpected stabilization by copper ions

Biochemistry

Volumn 43, Issue 35, 2004, Pages 11196-11205

  Horn, Virginie ^a   Lacroix, Laurent ^b   Gautier, Thierry ^a   Takasugi, Masashi ^b   Mergny, Jean Louis ^b   Lacoste, Jérôme ^c  

^a INSTITUT ALBERT BONNIOT   (France)

^b MUSÉUM NATIONAL D'HISTOIRE NATURELLE   (France)

^c INSERM   (France)

Author keywords

[No Author keywords available]

Indexed keywords

STABILIZING FACTORS; TRIPLE HELIX FORMATION;

CONCENTRATION (PROCESS); ELECTROPHORESIS; GENES; STABILITY; ULTRAVIOLET RADIATION;

SATELLITES;

COPPER; MAGNESIUM; PYRIMIDINE; REPETITIVE DNA;

ARTICLE; COMPLEX FORMATION; CONCENTRATION RESPONSE; DNA STRUCTURE; DROSOPHILA; DROSOPHILA MELANOGASTER; ELECTROPHORETIC MOBILITY; FLY; MELTING POINT; METAL BINDING; MOLECULAR STABILITY; NONHUMAN; PH MEASUREMENT; PRIORITY JOURNAL; PROTEIN MODIFICATION; PROTEIN MOTIF; PROTEIN STRUCTURE; TRIPLE HELIX;

ANIMALS; BASE PAIRING; CATIONS, DIVALENT; COPPER; DNA; DNA, SATELLITE; DROSOPHILA MELANOGASTER; ELECTROPHORETIC MOBILITY SHIFT ASSAY; HETEROCHROMATIN; HYDROGEN-ION CONCENTRATION; MAGNESIUM; NUCLEIC ACID CONFORMATION; OLIGONUCLEOTIDES; PYRIMIDINE NUCLEOTIDES; REPETITIVE SEQUENCES, NUCLEIC ACID; ULTRAVIOLET RAYS;

ARACHNIDA; DROSOPHILA MELANOGASTER; HEXAPODA; MELANOGASTER;

EID: 4444380263     PISSN: 00062960     EISSN: None     Source Type: Journal    
DOI: 10.1021/bi049287t     Document Type: Article

References (50)

1. Heitz, E. (1928) Jahrb. Wiss. Bot. 69, 762-818.
2. Hennig, W. (1999) Chromosoma 108, 1-9.
3. Henikoff, S. (2000) Biochim. Biophys. Acta 1470, O1-O8.
4. Verma, R. S. (1988) Heterochromatin. Molecular and structural aspects, Cambridge University Press, Cambridge.
5. Hoskins, R. A., Smith, C. D., Carlson, J. W., Carvalho, A. B., Halpern, A., Kaminker, J. S., Kennedy, C., Mungall, C. J., Sullivan, B. A., Sutton, G. G., Yasuhara, J. C., Wakimoto, B. T., Myers, E. W., Celniker, S. E., Rubin, G. M., and Karpen, G. H. (2002) Genome Biol. 3, 0085.1-0085.16.
6. Sun, X., Le, H. D., Wahlstrom, J. M., and Karpen, G. H. (2003) Genome Res. 13, 182-194.
7. Sun, X., Wahlstrom, J., and Karpen, G. (1997) Cell 91, 1007-1019.
8. Horvath, J. E., Schwartz, S., and Eichler, E. E. (2000) Genome Res. 10, 839-852.
9. Dillon, N., and Festenstein, R. (2002) Trends Genet. 18, 252-258.
10. Sunkel, C. E., and Coelho, P. A. (1995) Curr. Opin. Genet. Dev. 5, 756-767.
11. Zinkowski, R. P., Meyne, J., and Brinkley, B. R. (1991) J. Cell Biol. 113, 1091-1110.
12. Raff, J. W., Kellum, R., and Alberts, B. (1994) EMBO J. 13, 5977-5983.
13. Cobb, B. S., Morales-Alcelay, S., Kleiger, G., Brown, K. E., Fisher, A. G., and Smale, S. T. (2000) Genes Dev. 14, 2146-2160.
14. Yamada, T., Fukuda, R., Himeno, M., and Sugimoto, K. (1999) J. Biochem. (Tokyo) 125. 832-837.
15. Frank-Kamenetskii, M. D., and Mirkin, S. M. (1995) Annu. Rev. Biochem. 64. 65-95.
16. Platero, J. S., Csink, A. K., Quintanilla, A., and Henikoff, S. (1998) J. Cell Biol. 140, 1297-1306.
17. Jimenez-Garcia, E., Vaquero, A., Espinas, M. L., Soliva, R., Orozco, M., Bernues, J., and Azorin, F. (1998) J. Biol. Chem. 273, 24640-24648.
18. Mahmoudi, T., Katsani, K. R., and Verrijzer, C. P. (2002) EMBO J. 21, 1775-1781.
19. Malkov, V. A., Voloshin, O. N., Soyfer, V. N., and Frank-Kamenetskii, M. D. (1993) Nucleic Acids Res. 21, 585-591.
20. Bernues, J., Beltran, R., Casasnovas, J. M., and Azorin, F. (1990) Nucleic Acids Res. 18, 4067-4073.
21. Mills, M., Arimondo, P. B., Lacroix, L., Garestier, T., Hélène, C., Klump, H., and Mergny, J. L. (1999) J. Mol. Biol. 291, 1035-1054.
22. Moser, H. E., and Dervan, P. B. (1987) Science 238, 645-650.
23. Le Doan, T., Perrouault, L., Praseuth, D., Habhoub, N., Decout, J. L., Thuong, N. T., Lhomme, J., and Hélène, C. (1987) Nucleic Acids Res. 15, 7749-7760.
24. Beal, P. A., and Dervan, P. B. (1991) Science 251, 1360-1363.
25. Dittrich, K., Gu, J., Tinder, R., Hogan, M., and Gao, X. (1994) Biochemistry 33, 4111-4120.
26. Howard, F. B., Miles, H. T., and Ross, P. D. (1995) Biochemistry 34, 7135-7144.
27. Mills, M., Lacroix, L., Arimondo, P. B., Leroy, J. L., Francois, J. C., Klump, H., and Mergny, J. L. (2002) Curr. Med. Chem.: Anti-Cancer Agents 2, 627-644.
28. Chan, P. P., and Glazer, P. M. (1997) J. Mol. Med. 75, 267-282.
29. Lee, J. S., Woodsworth, M. L., Latimer, L. J., and Morgan, A. R. (1984) Nucleic Acids Res. 12, 6603-6614.
30. Froehler, B. C., Wadwani, S., Terhorst, T. J., and Gerrard, S. R. (1992) Tetrahedron Lett. 33, 5307-5310.
31. Shimizu, M., Konishi, A., Shimada, Y., Inoue, H., and Ohtsuka, E. (1992) FEBS Lett. 302, 155-158.
32. Escudé, C., Sun, J. S., Rougée, M., Garestier, T., and Hélène, C. (1992) C. R. Acad. Sci., Ser. III 315, 521-525.
33. Francois, J. C., Lacoste, J., Lacroix, L., and Mergny, J. L. (2000) Methods Enzymol. 313, 74-95.
34. Lacroix, L., Arimondo, P. B., Takasugi, M., Hélène, C., and Mergny, J. L. (2000) Biochem. Biophys. Res. Commun. 270, 363-369.
35. Basye, J., Trent, J. O., Gao, D., and Ebbinghaus, S. W. (2001) Nucleic Acids Res. 29, 4873-4880.
36. Cantor, C. R., Warshaw, M. M., and Shapiro, H. (1970) Biopolymers 9, 1059-1077.
37. Mergny, J. L., Lacroix, L., Han, X., Leroy, J. L., and Hélène, C. (1995) J. Am. Chem. Soc. 117, 8887-8898.
38. Rougée, M., Faucon, B., Mergny, J. L., Barcelo, F., Giovannangeli, C., Garestier, T., and Hélène, C. (1992) Biochemistry 31, 9269-9278.
39. Csink, A. K., and Henikoff, S. (1998) Trends Genet. 14, 200-204.
40. Summerton, J., Stein, D., Huang, S. B., Matthews, P., Weller, D., and Partridge, M. (1997) Antisense Nucleic Acid Drug Dev. 7, 63-70.
41. Lacroix, L., Mergny, J. L., Leroy, J. L., and Hélène, C. (1996) Biochemistry 35, 8715-8722.
42. Maher, L. J., Dervan, P. B., and Wold, B. J. (1990) Biochemistry 29, 8820-8826.
43. Singleton, S. F., and Dervan, P. B. (1993) Biochemistry 32, 13171-13179.
44. Lacroix, L., and Mergny, J. L. (2000) Arch. Biochem. Biophys. 381, 153-163.
45. Saenger, W. (1984) Principles of Nucleic Acids Structure, Springer-Verlag, New York.
46. Svinarchuk, F., Bertrand, J. R., and Malvy, C. (1994) Nucleic Acids Res. 22, 3742-3747.
47. Sigel, A., and Sigel, H. (1996) Metal ions in biological systems, Vol. 32, Marcel Dekker, New York.
48. Sagripanti, J. L., Goering, P. L., and Lamanna, A. (1991) Toxicol. Appl. Pharmacol. 110, 477-485.
49. Johnson, M. D., III, and Fresco, J. R. (1999) Chromosoma 108, 181-189.
50. Ohno, M., Fukagawa, T., Lee, J. S., and Ikemura, T. (2002) Chromosoma 111, 201-213.