메뉴 건너뛰기




Volumn 342, Issue 5, 2004, Pages 1647-1658

The efficiency of mispaired ligations by λ integrase is extremely sensitive to context

Author keywords

E. coli bacteriophage; multimeric complexes; protein DNA interactions; protein protein interactions; site specific recombination

Indexed keywords

ARGININE; ASPARTIC ACID; DIMER; DNA; INTEGRASE; POLYMER; TETRAMER;

EID: 4444370889     PISSN: 00222836     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.jmb.2004.08.008     Document Type: Article
Times cited : (8)

References (40)
  • 1
    • 77957094820 scopus 로고
    • Episomes
    • E.W. Caspari J.M. Thoday Academic Press New York
    • A.M. Campbell Episomes E.W. Caspari J.M. Thoday Advances in Genetics 1962 Academic Press New York 101 145
    • (1962) Advances in Genetics , pp. 101-145
    • Campbell, A.M.1
  • 2
    • 0018070654 scopus 로고
    • The bacteriophage λ int gene product
    • Y. Kikuchi, and H.A. Nash The bacteriophage λ int gene product J. Biol. Chem. 253 1978 7149 7157
    • (1978) J. Biol. Chem. , vol.253 , pp. 7149-7157
    • Kikuchi, Y.1    Nash, H.A.2
  • 3
    • 85158027421 scopus 로고    scopus 로고
    • Mobile DNA: An introduction
    • N.L. Craig R. Craigie M. Gellert A.M. Lambowitz ASM Press Washington, DC
    • N.L. Craig Mobile DNA: an introduction N.L. Craig R. Craigie M. Gellert A.M. Lambowitz Mobile DNA II 2002 ASM Press Washington, DC 3 11
    • (2002) Mobile DNA II , pp. 3-11
    • Craig, N.L.1
  • 4
    • 0001931646 scopus 로고    scopus 로고
    • λ Int and the λ Int family
    • N.L. Craig R. Craigie M. Gellert A. Lambowitz ASM Press Washington, DC
    • M.A. Azaro, and A. Landy λ Int and the λ Int family N.L. Craig R. Craigie M. Gellert A. Lambowitz Mobile DNA II 2002 ASM Press Washington, DC 118 148
    • (2002) Mobile DNA II , pp. 118-148
    • Azaro, M.A.1    Landy, A.2
  • 5
    • 85158014868 scopus 로고    scopus 로고
    • Xer site-specific recombination: Promoting chromosome segregation
    • N.L. Craig R. Craigie M. Gellert A.M. Lambowitz ASM Press Washington, DC
    • F.-X. Barre, and D.J. Sherratt Xer site-specific recombination: promoting chromosome segregation N.L. Craig R. Craigie M. Gellert A.M. Lambowitz Mobile DNA II 2002 ASM Press Washington, DC 149 161
    • (2002) Mobile DNA II , pp. 149-161
    • Barre, F.-X.1    Sherratt, D.J.2
  • 6
    • 85157986030 scopus 로고    scopus 로고
    • Gene acquisition in bacteria by integron-mediated site-specific recombination
    • N.L. Craig R. Craigie M. Gellert A.M. Lambowitz ASM Press Washington, DC
    • G.D. Recchia, and D.J. Sherratt Gene acquisition in bacteria by integron-mediated site-specific recombination N.L. Craig R. Craigie M. Gellert A.M. Lambowitz Mobile DNA II 2002 ASM Press Washington, DC 162 176
    • (2002) Mobile DNA II , pp. 162-176
    • Recchia, G.D.1    Sherratt, D.J.2
  • 7
    • 85158017778 scopus 로고    scopus 로고
    • Conjugative transposons and related mobile elements
    • N.L. Craig R. Craigie M. Gellert A.M. Lambowitz ASM Press Washington, DC
    • G. Churchward Conjugative transposons and related mobile elements N.L. Craig R. Craigie M. Gellert A.M. Lambowitz Mobile DNA II 2002 ASM Press Washington, DC 177 191
    • (2002) Mobile DNA II , pp. 177-191
    • Churchward, G.1
  • 8
    • 85158066964 scopus 로고    scopus 로고
    • Site-specific recombination by the Flp protein of Saccharomyces cerevisiae
    • N.L. Craig R. Craigie M. Gellert A.M. Lambowitz ASM Press Washington, DC
    • M. Jayaram, I. Grainge, and G. Tribble Site-specific recombination by the Flp protein of Saccharomyces cerevisiae N.L. Craig R. Craigie M. Gellert A.M. Lambowitz Mobile DNA II 2002 ASM Press Washington, DC 192 218
    • (2002) Mobile DNA II , pp. 192-218
    • Jayaram, M.1    Grainge, I.2    Tribble, G.3
  • 9
    • 0032549763 scopus 로고    scopus 로고
    • Conservation of structure and mechanism between eukaryotic topoisomerase I and site-specific recombinases
    • C. Cheng, P. Kussie, N. Pavletich, and S. Shuman Conservation of structure and mechanism between eukaryotic topoisomerase I and site-specific recombinases Cell 92 1998 841 850
    • (1998) Cell , vol.92 , pp. 841-850
    • Cheng, C.1    Kussie, P.2    Pavletich, N.3    Shuman, S.4
  • 10
    • 0024278670 scopus 로고
    • Suicide recombination substrates yield covalent λ integrase-DNA complexes and lead to identification of the active site tyrosine
    • C.A. Pargellis, S.E. Nunes-Düby, L. Moitoso de Vargas, and A. Landy Suicide recombination substrates yield covalent λ integrase-DNA complexes and lead to identification of the active site tyrosine J. Biol. Chem. 263 1988 7678 7685
    • (1988) J. Biol. Chem. , vol.263 , pp. 7678-7685
    • Pargellis, C.A.1    Nunes-Düby, S.E.2    Moitoso De Vargas, L.3    Landy, A.4
  • 11
    • 0032589787 scopus 로고    scopus 로고
    • The integrase family of recombinase: Organization and function of the active site
    • I. Grainge, and M. Jayaram The integrase family of recombinase: organization and function of the active site Mol. Microbiol. 33 1999 449 456
    • (1999) Mol. Microbiol. , vol.33 , pp. 449-456
    • Grainge, I.1    Jayaram, M.2
  • 12
    • 85157962287 scopus 로고    scopus 로고
    • A structural view of tyrosine recombinase site-specific recombination
    • N.L. Craig R. Craigie M. Gellert A.M. Lambowitz ASM Press Washington, DC
    • G.D. Van Duyne A structural view of tyrosine recombinase site-specific recombination N.L. Craig R. Craigie M. Gellert A.M. Lambowitz Mobile DNA II 2002 ASM Press Washington, DC 93 117
    • (2002) Mobile DNA II , pp. 93-117
    • Van Duyne, G.D.1
  • 13
    • 0031551575 scopus 로고    scopus 로고
    • Sensing homology at the strand swapping step in λ excisive recombination
    • S.E. Nunes-Düby, D. Yu, and A. Landy Sensing homology at the strand swapping step in λ excisive recombination J. Mol. Biol. 272 1997 493 508
    • (1997) J. Mol. Biol. , vol.272 , pp. 493-508
    • Nunes-Düby, S.E.1    Yu, D.2    Landy, A.3
  • 14
    • 0023667024 scopus 로고
    • Site-specific recombination intermediates trapped with suicide substrates
    • S.E. Nunes-Düby, L. Matsumoto, and A. Landy Site-specific recombination intermediates trapped with suicide substrates Cell 50 1987 779 788
    • (1987) Cell , vol.50 , pp. 779-788
    • Nunes-Düby, S.E.1    Matsumoto, L.2    Landy, A.3
  • 15
    • 0022429093 scopus 로고
    • Extent of sequence homology required for bacteriophage lambda site-specific recombination
    • C.E. Bauer, J.F. Gardner, and R.I. Gumport Extent of sequence homology required for bacteriophage lambda site-specific recombination J. Mol. Biol. 181 1985 187 197
    • (1985) J. Mol. Biol. , vol.181 , pp. 187-197
    • Bauer, C.E.1    Gardner, J.F.2    Gumport, R.I.3
  • 16
    • 0023248643 scopus 로고
    • Role of homology in site-specific recombination of bacteriophage λ: Evidence against joining of cohesive ends
    • H.A. Nash, C.E. Bauer, and J.F. Gardner Role of homology in site-specific recombination of bacteriophage λ: evidence against joining of cohesive ends Proc. Natl Acad. Sci. USA 84 1987 4049 4053
    • (1987) Proc. Natl Acad. Sci. USA , vol.84 , pp. 4049-4053
    • Nash, H.A.1    Bauer, C.E.2    Gardner, J.F.3
  • 17
    • 0029411624 scopus 로고
    • Suicide substrates reveal properties of the homology-dependent steps during integrative recombination of bacteriophage λ
    • A.B. Burgin, and H.A. Nash Suicide substrates reveal properties of the homology-dependent steps during integrative recombination of bacteriophage λ Curr. Biol. 5 1995 1312 1321
    • (1995) Curr. Biol. , vol.5 , pp. 1312-1321
    • Burgin, A.B.1    Nash, H.A.2
  • 18
    • 0029240229 scopus 로고
    • Swapping DNA strands and sensing homology without branch migration in λ site-specific recombination
    • S. Nunes-Düby, M. Azaro, and A. Landy Swapping DNA strands and sensing homology without branch migration in λ site-specific recombination Curr. Biol. 5 1995 139 148
    • (1995) Curr. Biol. , vol.5 , pp. 139-148
    • Nunes-Düby, S.1    Azaro, M.2    Landy, A.3
  • 19
    • 0024431718 scopus 로고
    • Half-att site substrates reveal the homology independence and minimal protein requirements for productive synapsis in λ excisive recombination
    • S.E. Nunes-Düby, L. Matsumoto, and A. Landy Half-att site substrates reveal the homology independence and minimal protein requirements for productive synapsis in λ excisive recombination Cell 59 1989 197 206
    • (1989) Cell , vol.59 , pp. 197-206
    • Nunes-Düby, S.E.1    Matsumoto, L.2    Landy, A.3
  • 20
    • 0023179984 scopus 로고
    • Homology-dependent interactions in phage λ site-specific recombination
    • P.A. Kitts, and H.A. Nash Homology-dependent interactions in phage λ site-specific recombination Nature 329 1987 346 348
    • (1987) Nature , vol.329 , pp. 346-348
    • Kitts, P.A.1    Nash, H.A.2
  • 21
    • 0031566951 scopus 로고    scopus 로고
    • The yeast site-specific recombinase Flp mediates alcoholysis and hydrolysis of the strand cleavage product: Mimicking the strand-joining reaction with non-DNA nucleophiles
    • B.R. Knudsen, K. Dahlstrom, O. Westergaard, and M. Jayaram The yeast site-specific recombinase Flp mediates alcoholysis and hydrolysis of the strand cleavage product: mimicking the strand-joining reaction with non-DNA nucleophiles J. Mol. Biol. 266 1997 93 107
    • (1997) J. Mol. Biol. , vol.266 , pp. 93-107
    • Knudsen, B.R.1    Dahlstrom, K.2    Westergaard, O.3    Jayaram, M.4
  • 22
    • 0027277026 scopus 로고
    • Sequence-specific cleavage of DNA via nucleophilic attack of hydrogen peroxide, assisted by FLP recombinase
    • A.S. Kimball, J. Lee, M. Jayaram, and T.D. Tullius Sequence-specific cleavage of DNA via nucleophilic attack of hydrogen peroxide, assisted by FLP recombinase Biochemistry 32 1993 4698 4701
    • (1993) Biochemistry , vol.32 , pp. 4698-4701
    • Kimball, A.S.1    Lee, J.2    Jayaram, M.3    Tullius, T.D.4
  • 23
    • 0027248517 scopus 로고
    • Mechanism of site-specific recombination: Logic of assembling recombinase catalytic site from fractional active sites
    • J. Lee, and M. Jayaram Mechanism of site-specific recombination: logic of assembling recombinase catalytic site from fractional active sites J. Biol. Chem. 268 1993 17564 17570
    • (1993) J. Biol. Chem. , vol.268 , pp. 17564-17570
    • Lee, J.1    Jayaram, M.2
  • 24
    • 0032037326 scopus 로고    scopus 로고
    • Flp ribonuclease activities. Mechanistic similarities and contrasts to site-specific DNA recombination
    • C.J. Xu, Y.T. Ahn, S. Pathania, and M. Jayaram Flp ribonuclease activities. Mechanistic similarities and contrasts to site-specific DNA recombination J. Biol. Chem. 1 1998 729 739
    • (1998) J. Biol. Chem. , vol.1 , pp. 729-739
    • Xu, C.J.1    Ahn, Y.T.2    Pathania, S.3    Jayaram, M.4
  • 25
    • 0032037326 scopus 로고    scopus 로고
    • Unveiling two distinct ribonuclease activities and a topoisomerase activity in a site-specific DNA recombinase
    • C. Xu, I. Grainge, J. Lee, R.M. Harshey, and M. Jayaram Unveiling two distinct ribonuclease activities and a topoisomerase activity in a site-specific DNA recombinase Mol. Cell 1 1998 729 739
    • (1998) Mol. Cell , vol.1 , pp. 729-739
    • Xu, C.1    Grainge, I.2    Lee, J.3    Harshey, R.M.4    Jayaram, M.5
  • 27
    • 0024463676 scopus 로고
    • Heteroduplex substrates for bacteriophage lambda site-specific recombination: Cleavage and strand transfer products
    • H.A. Nash, and C.A. Robertson Heteroduplex substrates for bacteriophage lambda site-specific recombination: cleavage and strand transfer products EMBO J. 8 1989 3523 3533
    • (1989) EMBO J. , vol.8 , pp. 3523-3533
    • Nash, H.A.1    Robertson, C.A.2
  • 30
  • 31
    • 0037155871 scopus 로고    scopus 로고
    • Phage N15 telomere resolution: Target requirements for recognition and processing by the protelomerase
    • J. Deneke, G. Ziegelin, R. Lurz, and E. Lanka Phage N15 telomere resolution: target requirements for recognition and processing by the protelomerase J. Biol. Chem. 277 2002 10410 10419
    • (2002) J. Biol. Chem. , vol.277 , pp. 10410-10419
    • Deneke, J.1    Ziegelin, G.2    Lurz, R.3    Lanka, E.4
  • 32
    • 0024296991 scopus 로고
    • An intermediate in the phage λ site-specific recombination reaction is revealed by phosphorothioate substitution in DNA
    • P.A. Kitts, and H.A. Nash An intermediate in the phage λ site-specific recombination reaction is revealed by phosphorothioate substitution in DNA Nucl. Acids Res. 16 1988 6839 6856
    • (1988) Nucl. Acids Res. , vol.16 , pp. 6839-6856
    • Kitts, P.A.1    Nash, H.A.2
  • 33
    • 0024386798 scopus 로고
    • Dynamic, structural and regulatory aspects of lambda site-specific recombination
    • A. Landy Dynamic, structural and regulatory aspects of lambda site-specific recombination Annu. Rev. Biochem. 58 1989 913 949
    • (1989) Annu. Rev. Biochem. , vol.58 , pp. 913-949
    • Landy, A.1
  • 34
    • 1542327704 scopus 로고    scopus 로고
    • Two structural features of λ integrase that are critical for DNA cleavage multimers but not by monomers
    • S.Y. Lee, H. Aihara, T. Ellenberger, and A. Landy Two structural features of λ integrase that are critical for DNA cleavage multimers but not by monomers Proc. Natl Acad. Sci. USA 101 2004 2770 2775
    • (2004) Proc. Natl Acad. Sci. USA , vol.101 , pp. 2770-2775
    • Lee, S.Y.1    Aihara, H.2    Ellenberger, T.3    Landy, A.4
  • 35
    • 0030950350 scopus 로고    scopus 로고
    • The isomeric preference of Holliday junctions influences resolution bias by λ integrase
    • M.A. Azaro, and A. Landy The isomeric preference of Holliday junctions influences resolution bias by λ integrase EMBO J. 16 1997 3744 3755
    • (1997) EMBO J. , vol.16 , pp. 3744-3755
    • Azaro, M.A.1    Landy, A.2
  • 36
    • 0001656001 scopus 로고    scopus 로고
    • Flexibility in DNA recombination: Structure of the λ integrase catalytic core
    • H.J. Kwon, R.S. Tirumalai, A. Landy, and T. Ellenberger Flexibility in DNA recombination: structure of the λ integrase catalytic core Science 276 1997 126 131
    • (1997) Science , vol.276 , pp. 126-131
    • Kwon, H.J.1    Tirumalai, R.S.2    Landy, A.3    Ellenberger, T.4
  • 37
    • 0043127393 scopus 로고    scopus 로고
    • A conformational switch controls the DNA cleavage activity of Lambda integrase
    • H. Aihara, H.J. Kwon, S.E. Nunes-Düby, A. Landy, and T. Ellenberger A conformational switch controls the DNA cleavage activity of Lambda integrase Mol. Cell 12 2003 187 198
    • (2003) Mol. Cell , vol.12 , pp. 187-198
    • Aihara, H.1    Kwon, H.J.2    Nunes-Düby, S.E.3    Landy, A.4    Ellenberger, T.5
  • 38
    • 0034991483 scopus 로고    scopus 로고
    • A structural view of cre-loxp site-specific recombination
    • G.D. Van Duyne A structural view of cre-loxp site-specific recombination Annu. Rev. Biophys. Biomol. Struct. 30 2001 87 104
    • (2001) Annu. Rev. Biophys. Biomol. Struct. , vol.30 , pp. 87-104
    • Van Duyne, G.D.1
  • 39
    • 0041375463 scopus 로고    scopus 로고
    • New insight into site-specific recombination from Flp recombinase-DNA structures
    • Y. Chen, and P.A. Rice New insight into site-specific recombination from Flp recombinase-DNA structures Annu. Rev. Biophys. Biomol. Struct. 32 2003 135 139
    • (2003) Annu. Rev. Biophys. Biomol. Struct. , vol.32 , pp. 135-139
    • Chen, Y.1    Rice, P.A.2
  • 40
    • 0344806949 scopus 로고    scopus 로고
    • Arm sequences contribute to the architecture and catalytic function of a λ integrase-holliday junction complex
    • M. Radman-Livaja, C. Shaw, M. Azaro, T. Biswas, T. Ellenberger, and A. Landy Arm sequences contribute to the architecture and catalytic function of a λ integrase-holliday junction complex Mol. Cell 11 2003 783 794
    • (2003) Mol. Cell , vol.11 , pp. 783-794
    • Radman-Livaja, M.1    Shaw, C.2    Azaro, M.3    Biswas, T.4    Ellenberger, T.5    Landy, A.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.