Role of the putative structural protein Sed1p in mitochondrial genome maintenance

Journal of Molecular Biology

Volumn 342, Issue 4, 2004, Pages 1115-1129

  Phadnis, Naina ^a   Ayres Sia, Elaine ^a  

^a UNIVERSITY OF ROCHESTER   (United States)

Author keywords

cell wall protein; genome maintenance; MIP1; mitochondria; SED1

Indexed keywords

CELL MEMBRANE PROTEIN; FUNGAL PROTEIN; MITOCHONDRIAL DNA; MITOCHONDRIAL ENZYME; MITOCHONDRIAL PROTEIN; PROTEIN SED1P; PROTEINASE K; STRUCTURAL PROTEIN; UNCLASSIFIED DRUG;

ARTICLE; CELLULAR DISTRIBUTION; FUNGAL GENETICS; GENE OVEREXPRESSION; GENOME ANALYSIS; IMMUNOFLUORESCENCE; IN VITRO STUDY; MITOCHONDRIAL GENETICS; MITOCHONDRIAL RESPIRATION; NONHUMAN; NUCLEOTIDE SEQUENCE; POINT MUTATION; PRIORITY JOURNAL; PROTEIN DETERMINATION; PROTEIN EXPRESSION; PROTEIN LOCALIZATION; PROTEIN MODIFICATION; PROTEIN STABILITY; PROTEIN STRUCTURE; QUANTITATIVE ANALYSIS; REDUCTION; SACCHAROMYCES CEREVISIAE; STRUCTURAL GENE; STRUCTURE ANALYSIS; TWO HYBRID SYSTEM;

BACTERIA (MICROORGANISMS); SACCHAROMYCES; SACCHAROMYCES CEREVISIAE;

EID: 4444368320     PISSN: 00222836     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.jmb.2004.07.096     Document Type: Article

References (46)

1. F. Foury, T. Roganti, N. Lecrenier, and B. Purnelle The complete sequence of the mitochondrial genome of Saccharomyces cerevisiae FEBS Letters 440 1998 325 331
2. G.W. Grimes, H.R. Mahler, and P.S. Perlman Letter: Mitochondrial morphology J. Cell Biol. 61 1974 565 574
3. E.P. Sena, J.W. Welch, H.O. Halvorson, and G. Fogel Nuclear and mitochondrial deoxyribonucleic acid replication during mitosis in Saccharomyces cerevisiae J. Bacteriol. 123 1975 497 504
4. D.H. Williamson, and E. Moustacchi The synthesis of mitochondrial DNA during the cell cycle in the yeast Saccharomyces cerevisiae Biochem. Biophys. Res. Commun. 2 1971 195 201
5. F. Foury Cloning and sequencing of the nuclear gene MIP1 encoding the catalytic subunit of the yeast mitochondrial DNA polymerase J. Biol. Chem. 264 1989 20552 20560
6. F. Foury, and S. Vanderstraeten Yeast mitochondrial DNA mutators with deficient proof reading exonucleolytic activity EMBO J. 11 1992 2717 2726
7. J.S. Ping, S. Vanderstraeten, and F. Foury Isolation and characterization of ten mutator alleles of the mitochondrial DNA polymerase-encoding MIP1 gene from Saccharomyces cerevisiae Expt. Cell Res. 133 1995 1 13
8. G. Baldacci, B. Cherif-Zahar, and G. Bernardi The initiation of DNA replication in the mitochondrial genome of yeast EMBO J. 3 1984 2115 2120
9. F. Foury, and N. Lecrenier New features of mitochondrial DNA replication system in yeast and man Gene 246 2000 37 48
10. W.L. Fangman, J.W. Henly, and B.J. Brewer RPO41-independent maintenance of rho- mitochondrial DNA in Saccharomyces cerevisiae Mol. Cell. Biol. 10 1990 10 15
11. T. Asai, S. Sommer, A. Bailone, and T. Kogoma Homologous recombination dependent initiation of DNA replication from DNA damage inducible origins in Escherichia coli EMBO J. 12 1993 3287 3295
12. S. Meeusen, and J. Nunnari Evidence for a two membrane-spanning autonomous mitochondrial DNA replisome J. Cell Biol. 163 2003 503 510
13. B. Kucejova, and F. Foury Search for protein partners of mitochondrial single-stranded DNA-binding protein Rim1p using a yeast two-hybrid system Folia. Microbiol. (Praha) 48 2003 183 188
14. P. Uetz, L. Giot, G. Cagney, T.A. Mansfield, R.S. Judson, and J.R. Knight A comprehensive analysis of protein-protein interactions in Saccharomyces cerevisiae Nature 403 2000 601 603
15. K. Oender, M. Loeffler, E. Doppler, M. Eder, S. Lach, and F. Heinrich Translational regulator Rpl10p/Grc5p interacts physically and functionally with Sed1p, a dynamic component of the yeast cell surface Yeast 20 2003 281 294
16. A.F. Dick, S. Karaamanous, and B.L. Trumpower QSR1, an essential yeast gene with a genetic relationship to a subunit of the mitochondrial cytochrome bc1 complex, codes for a 60 S ribosomal subunit protein J. Biol. Chem. 272 1997 13372 13379
17. H. Shimoi, H. Kitagaki, H. Ohmori, Y. Imura, and K. Ito Sed1p is a major cell wall protein of Saccharomyces cerevisiae in the stationary phase and is involved in lytic enzyme resistance J. Bacteriol. 180 1998 3381 3387
18. P.B. Ross-Macdonald, A. Sheehan, G.S. Roeder, and M. Snyder A multipurpose transposon system for analyzing protein production, localization, and function in Saccharomyces cerevisiae Proc. Natl Acad. Sci. USA 94 1997 190 195
19. C. Meisinger, T. Sommer, and N. Pfanner Purification of Saccharomyces cerevisiae mitochondria devoid of microsomal and cytosolic contaminations Anal. Biochem. 287 2000 339 342
20. F. Sor, and H. Fukhara Complete DNA sequence coding for the large ribosomal RNA of yeast mitochondria Nucl. Acids Res. 11 1983 339 348
21. D.E. Lea, and C.A. Coulson The distribution of the number of mutants in bacterial populations Curr. Genet. 49 1949 264 285
22. P. Koprowski, M.U. Fikus, P. Mieczkowski, and Z. Ciesla A dominant mitochondrial mutator phenotype of Saccharomyces cerevisiae conferred by msh1 alleles altered in the sequence encoding the ATP-binding domain Mol. Genet. Genomics 266 2002 988 994
23. K.G. Hardwick, J.C. Boothroyd, A.D. Rudner, and H.R. Pelham Genes that allow yeast cells to grown in the absence of the HDEL receptor EMBO J. 11 1992 4187 4195
24. M. Picard, and V. Contamine Maintenance and Integrity of the mitochondrial genome: a plethora of nuclear genes in the budding yeast Microbiol. Mol. Biol. Rev. 64 2000 281 315
25. M. Filipak, M.A. Drebot, L.S. Ireland, R.A. Singer, and G.C. Johnston Mitochondrial DNA loss by yeast reentry-mutant cells conditionally unable to proliferate from stationary phase Curr. Genet. 22 1992 471 477
26. I.J. Blader, M.J.T.V. Cope, T.R. Jackson, A.A. Profit, A.F. Greenwood, and D.G. Drubin GCS1, an ARF guanosine triphosphatase-activating protein in Saccharomyces cerevisiae, is required for normal actin cytoskeletal organization in vivo and stimulates actin polymerization in vitro Mol. Biol. Cell 10 1999 581 596
27. Huang, C., Chen, C., Tung, L., Buu, L. & Lee, F. S. (2001). The yeast ADP ribosylation factor GAP, Gcs1p, is involved in maintenance of mitochondrial morphology. Cell Sci. 115, 275-282.
28. G. Velours, C. Boucheron, S. Manon, and N. Camougrand Dual cell wall/mitochondria localization of the "SUN" family proteins FEMS Microbiol. Letters 207 2002 165 172
29. N.M. Camougrand, M. Moussaite, G.M. Velours, and M.G. Guerin The "SUN" family: UTH1, an ageing gene, is also involved in the regulation of mitochondria biogenesis in Saccharomyces cerevisiae Arch. Biochem. Biophys. 375 2000 154 160
30. R. Vongsamphanh, P. Fortier, and D. Ramotar Pir1p mediates translocation of the yeast Apn1p endonuclease into the mitochondria to maintain genomic instability Mol. Cell. Biol. 21 2001 1647 1655
31. X. Grandier-Vazeilles, K. Bathany, S. Chaignepain, N. Camougrand, S. Manon, and J.M. Schmitter Yeast mitochondrial dehydrogenases are associated in a supramolecular complex Biochemistry 40 2001 9758 9769
32. N.C. Chandra, M.J. Spiro, and R.G. Spiro Identification of a glycoprotein from rat liver mitochondrial inner membrane and demonstration of its origin in the endoplasmic reticulum J. Biol Chem. 273 1998 19715 19721
33. T. Beddoe, and T. Lithgow Delivery of nascent polypeptides to the mitochondrial surface Biochim. Biophys. Acta 1592 2002 35 39
34. M. Fujiki, and K. Verner Coupling of cytosolic protein synthesis and mitochondrial protein import in yeast J. Biol. Chem. 268 1993 1914 1920
35. I.Z. Ades, and R.A. Butow The products of mitochondria-bound cytoplasmic polysomes in yeast J. Biol. Chem. 255 1980 9918 9924
36. M. Suissa, and G. Schatz Translatable mRNAs for imported mitochondrial proteins are present in free as well as mitochondria-bound cytoplasmic polysomes J. Biol. Chem. 257 1982 13048 13055
37. R.E. Kellems, V.G. Allison, and R.A. Butow Cytoplasmic type 80s ribosomes associated with yeast mitochondria. IV. Attachment of ribosomes to the outer membrane of isolated mitochondria J. Cell Biol. 65 1975 1 14
38. D. Rickwood, J.A.A. Chambers, and M. Baret Isolation and preliminary characterization of DNA-protein complexes from the mitochondria of Saccharomyces cerevisiae Expt. Cell Res. 133 1981 1 13
39. W. Firshein Role of the DNA/membrane complex in prokaryotic DNA replication Annu. Rev. Microbiol. 43 1989 89 120
40. I. Miyakawa, S. Fumoto, T. Kuroiwa, and N. Sando Characterization of DNA binding proteins involved in the assembly of mitochondrial nucleoids in the yeast Saccharomyces cerevisae Plant Cell Physiol. 36 1995 1179 1188
41. S.M. Newman, T.O. Zelenaya, P.S. Perlman, and R.A. Butow Analysis of mitochondrial DNA nucleoids in wild type and a mutant strain of Saccharomyces cerevisiae that lacks the mitochondrial HMG box protein Abf2p Nucl. Acids Res. 24 1996 386 393
42. E.A. Sia, A. Dominska, L. Stefanovic, and T.D. Petes Isolation and characterization of point mutations in mismatch repair genes that destabilize microsatellites in yeast Mol. Cell. Biol. 21 2001 8157 8167
43. F. Sherman Getting started with yeast Methods Enzymol. 194 1991 3 21
44. F.M. Ausubel, R. Brent, R.E. Kingston, D.D. Moore, J.G. Seidman, J.A. Smith, and K. Struhl Current Protocols in Molecular Biology vol. 2 1994 Wiley New York
45. Herrman, J.M., Westermann, B. & Neupert, W. (2001). Analysis of protein-protein interactions in mitochondria by coimmunoprecipitation and chemical cross-linking. In Mitochondria (Pon, L.A. & Schon, E.A., eds), vol. 65, pp. 217-230, Academic Press, San Diego.
46. Miller, R.K. (2003). Monitoring spindle assembly and disassembly in yeast by indirect immunofluorescence. In Methods in Molecular Biology (Lieberman, H.B., ed), vol. 241, pp. 341-352, Humana Press, Totowa, NJ.