Rapid identification of pickle yeasts by fluorescent PCR and microtemperature-gradient gel electrophoresis

FEMS Microbiology Letters

Volumn 238, Issue 1, 2004, Pages 43-48

  Tominaga, Tatsuya ^a  

^a Saitama Industrial Technology Center   (Japan)

Author keywords

D1 D2 26S rDNA; Fluorescent labeled PCR; Microtemperature gradient gel electrophoresis; Pickled Japanese radish yeasts

Indexed keywords

ARTICLE; CONTROLLED STUDY; DATA ANALYSIS; FLUORESCENCE; FOOD ANALYSIS; GEL ELECTROPHORESIS; GENE AMPLIFICATION; GENE IDENTIFICATION; GENETIC ANALYSIS; NONHUMAN; NUCLEOTIDE SEQUENCE; POLYMERASE CHAIN REACTION; PRIORITY JOURNAL; TEMPERATURE MEASUREMENT; YEAST;

DNA PRIMERS; DNA, FUNGAL; DNA, RIBOSOMAL; ELECTROPHORESIS, POLYACRYLAMIDE GEL; FLUORESCENCE; FLUORESCENT DYES; FOOD MICROBIOLOGY; GENES, RRNA; POLYMERASE CHAIN REACTION; RAPHANUS; RNA, RIBOSOMAL; TEMPERATURE; YEASTS;

RAPHANUS SATIVUS VAR. NIGER;

EID: 4444366023     PISSN: 03781097     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.femsle.2004.07.015     Document Type: Article

References (25)

1. S. Kato, and T. Nakase Yeast flora in soaked fluid of salted "Daikona" under a nitrogen packing system Nippon Shokuhin Kogyo Gakkaishi 33 1986 659 666
2. S. Kato, E. Kitamura, S. Yamamoto, and S. Ohshima Changes in constituents during the growth of Saccharomyces servazzii and Debaryomyces hansennii Nippon Shokuhin Kogyo Gakkaishi 38 1991 647 650
3. T. Tominaga, Y. Okuzawa, S. Kato, and M. Suzuki The first isolation of two types of trifluoroleucine resistant mutants of Saccharomyces servazzii Biotechnol. Lett. 25 2003 1735 1738
4. C.P. Kurtzman, and C.J. Robnett Identification and phylogeny of ascomycetous yeasts from analysis of nuclear large subunit (26S) ribosomal DNA partial sequences Antonie van Leeuwenhoek 73 1998 331 371
5. E. Naumova, G. Naumov, P. Fournier, H.V. Nguyen, and C. Gaillardin Chromosomal polymorphism of the yeast Yarrowia lipolytica and related species: electrophoretic karyotyping and hybridization with cloned genes Curr. Genet. 23 1993 450 454
6. M.M. Baleiras Couto, J.T.W.E. Vogels, H. Hofstra, J.H.J. Huis in't Veld, and J.M.B.M. van der Vossen Random amplified polymorphic DNA and restriction enzyme analysis of PCR amplified rDNA in taxonomy: two identification techniques for food-borne yeasts J. Appl. Bacteriol. 79 1995 525 535
7. M. Herzberg, R. Fischer, and A. Titze Conflicting results obtained by RAPD-PCR and large-subunit rDNA sequences in determining and comparing yeast strains isolated from flowers: a comparison of two methods Int. J. Syst. Evol. Microbiol. 52 2002 1423 1433
8. M. Angeles Pérez, F. Javier Gallego, and H. Pilar Evaluation of molecular techniques for the genetic characterization of Saccharomyces cerevisiae strains FEMS Microbiol. Lett. 205 2001 375 378
9. A. Capece, G. Salzano, and P. Romano Molecular typing techniques as a tool to differentiate non-Saccharomyces wine species Int. J. Food Microbiol. 84 2003 33 39
10. F.J. Las Heras-Vazquez, L. Mingorance-Cazorla, J.M. Clemente-Jimenez, and F. Rodriguez-Vico Identification of yeast species from orange fruit and juice by RFLP and sequence analysis of the 5.8S rRNA gene and the two internal transcribed spacers FEMS Yeast Res. 3 2003 3 9
11. A. Romano, S. Casaregola, P. Torre, and C. Gaillardin Use of RAPD and mitochondrial DNA RFLP for typing of Candida zeylanoides and Debaryomyces hansenii yeast strains isolated from cheese Syst. Appl. Microbiol. 19 1996 255 264
12. J.P. Ramos, P. Valente, R.A. de Souza, C.A. Rosa, and O. Leoncini Heteroduplex mobility assay of the D1/D2 region of the rDNA for differentiation of Saccharomyces species Lett. Appl. Microbiol. 33 2001 206 210
13. L. Cocolin, L.F. Bisson, and D.A. Mills Direct profiling of the yeast dynamics in wine fermentations FEMS Microbiol. Lett. 189 2000 81 87
14. S. Hernán-Gómez, J.C. Espinosa, and J.F. Ubeda Characterization of wine yeasts by temperature gradient gel electrophoresis (TGGE) FEMS Microbiol. Lett. 193 2000 45 50
15. G. Muyzer DGGE/TGGE a method for identifying genes from natural ecosystems Curr. Microbiol. 2 1999 317 322
16. G. Muyzer, and K. Smalla Application of denaturing gradient gel electrophoresis (DGGE) and temperature gradient gel electrophoresis (TGGE) in microbial ecology Antonie van Leeuwenhoek 73 1998 127 141
17. M. Biyani, and K. Nishigaki Sequence-specific and nonspecific mobilities of single-stranded oligonucleotides observed by changing the borate buffer concentration Electrophoresis 24 2003 628 633
18. M. Biyani, and K. Nishigaki Hundredfold productivity of genome analysis by introduction of microtemperature-gradient gel electrophoresis Electrophoresis 22 2001 23 38
19. S. Kato Production of low-salt Tsukemono using the nitrogen gas packing system Nippon Shokuhin Kogyo Gakkaishi 38 1991 1149 1155
20. K. O'Donnell Fusarium and its near relatives D.R. Reynolds J.W. Taylor The Fungal Holomorph: Mitotic, Meiotic and Pleomorphic Speciation in Fungal Systematics 1993 CAB International Wallingford, UK 225 233
21. K. Nishigaki, M. Naimuddin, and K. Hamano Genome profiling: a realistic solution for genotype-based identification of species J. Biochem. 128 2000 107 112
22. M. Naimuddin, T. Kurazono, Y. Zhang, T. Watanabe, M. Yamaguchi, and K. Nishigaki Species-identification dots: a potent tool for developing genome microbiology Gene 261 2000 243 250
23. K. Nishigaki, Y. Husimi, M. Masuda, K. Kaneko, and T. Tanaka Strand dissociation and cooperative melting of double-stranded DNAs detected by denaturant gradient gel electrophoresis J. Biochem. 95 1984 627 635
24. KM. Petersen, PL. Moller, and L. Jespersen DNA typing methods for differentiation of Debaryomyces hansenii strains and other yeasts related to surface ripened cheeses Int. J. Food Microbiol. 69 2001 11 24
25. B.M. Mannarelli, and C.P. Kurtzman Rapid identification of Candida albicans and other human pathogenic yeasts by using short oligonucleotides in a PCR J. Clin. Microbiol. 36 1998 1634 1641